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Volumn 4, Issue 6, 1996, Pages 715-724

Crystal structure of transaldolase B from Escherichia coli suggests a circular permutation of the α/β barrel within the class I aldolase family

Author keywords

Enzyme mechanism; Evolution; Gene permutation; Protein crystallography; Transaldolase

Indexed keywords

ESCHERICHIA COLI;

EID: 0030585419     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(96)00077-9     Document Type: Article
Times cited : (69)

References (37)
  • 1
    • 0008001026 scopus 로고
    • Physiological functions and mechanism of action of transketolase
    • (Bisswanger, H. & Ullrich, J., eds), Verlag Chemie, Weinheim, Germany
    • Gubler, C.J. (1991). Physiological functions and mechanism of action of transketolase. In Biochemistry and Physiology of Thiamin Diphosphate Enzymes. (Bisswanger, H. & Ullrich, J., eds), pp. 311-322, Verlag Chemie, Weinheim, Germany.
    • (1991) Biochemistry and Physiology of Thiamin Diphosphate Enzymes , pp. 311-322
    • Gubler, C.J.1
  • 2
    • 0344521079 scopus 로고
    • Mechanism of action of transaldolase
    • Venkatamaran, R. & Racker, E. (1961). Mechanism of action of transaldolase. J. Biol. Chem. 236, 1883-1886.
    • (1961) J. Biol. Chem. , vol.236 , pp. 1883-1886
    • Venkatamaran, R.1    Racker, E.2
  • 3
    • 0028862915 scopus 로고
    • Transaldolase B of Escherichia coli K-12: Cloning of its gene, talB, and characterization of the enzyme from recombinant strains
    • Sprenger, G.A., Schörken, U., Sprenger, G. & Sahm, H. (1995). Transaldolase B of Escherichia coli K-12: cloning of its gene, talB, and characterization of the enzyme from recombinant strains. J. Bacteriology 177, 5930-5936.
    • (1995) J. Bacteriology , vol.177 , pp. 5930-5936
    • Sprenger, G.A.1    Schörken, U.2    Sprenger, G.3    Sahm, H.4
  • 4
    • 0027332569 scopus 로고
    • Lysine144 is essential for the catalytic activity of Saccharomyces cerevisiae transaldolase
    • Miosga, T., Schaaff-Gerstenchläger, I., Franken, E. & Zimmermann, F.K. (1993). Lysine144 is essential for the catalytic activity of Saccharomyces cerevisiae transaldolase. Yeast 9, 1241-1249.
    • (1993) Yeast , vol.9 , pp. 1241-1249
    • Miosga, T.1    Schaaff-Gerstenchläger, I.2    Franken, E.3    Zimmermann, F.K.4
  • 5
    • 0001389155 scopus 로고
    • Transaldolase
    • (Boyer, P.D., ed), Academic Press, New York, NY
    • Tsolas, O. & Lai, C.Y. (1972). Transaldolase. In The Enzymes. (Boyer, P.D., ed), vol. 7, pp. 259-280, Academic Press, New York, NY.
    • (1972) The Enzymes , vol.7 , pp. 259-280
    • Tsolas, O.1    Lai, C.Y.2
  • 6
    • 0025349493 scopus 로고
    • Molecular analysis of the structural gene for yeast transaldolase
    • Schaaff, I., Hohmann, S. & Zimmermann, F.K. (1990). Molecular analysis of the structural gene for yeast transaldolase. Eur. J. Biochem. 188, 597-603.
    • (1990) Eur. J. Biochem. , vol.188 , pp. 597-603
    • Schaaff, I.1    Hohmann, S.2    Zimmermann, F.K.3
  • 7
    • 0028030737 scopus 로고
    • Cloning and expression of the human gene for transaldolase
    • Banki, K., Halladay, D. & Perl, A. (1994). Cloning and expression of the human gene for transaldolase. J. Biol. Chem. 269, 2847-2851.
    • (1994) J. Biol. Chem. , vol.269 , pp. 2847-2851
    • Banki, K.1    Halladay, D.2    Perl, A.3
  • 10
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and location of errors in these models
    • Jones, T.A., Zou, J.Y., Cowan, S. & Kjeldgaard, M. (1991). Improved methods for building protein models in electron density maps and location of errors in these models. Acta Cryst. A 47, 110-119.
    • (1991) Acta Cryst. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.3    Kjeldgaard, M.4
  • 11
    • 0014129401 scopus 로고
    • Isolation and sequence analysis of a peptide from the active site of transaldolase
    • Lai, C.Y., Chen, C. & Tsolas, O. (1967). Isolation and sequence analysis of a peptide from the active site of transaldolase. Arch. Biochem. Biophys. 121, 790-797.
    • (1967) Arch. Biochem. Biophys. , vol.121 , pp. 790-797
    • Lai, C.Y.1    Chen, C.2    Tsolas, O.3
  • 13
    • 0023446039 scopus 로고
    • Molecular architecture of rabbit skeletal muscle aldolase at 2.7 Å resolution
    • Sygusch, J., Beaudry, D. & Allaire, M. (1987). Molecular architecture of rabbit skeletal muscle aldolase at 2.7 Å resolution. Proc. Natl. Acad. Sci. USA 84, 7846-7850.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 7846-7850
    • Sygusch, J.1    Beaudry, D.2    Allaire, M.3
  • 14
    • 0026094033 scopus 로고
    • The crystal structure of fructose-1,6-bisphosphate aldolase from Drosophila melanogaster at 2.5 Å resolution
    • Hester, G., et al., & Piontek, K. (1991). The crystal structure of fructose-1,6-bisphosphate aldolase from Drosophila melanogaster at 2.5 Å resolution. FEBS Lett. 292, 237-242.
    • (1991) FEBS Lett. , vol.292 , pp. 237-242
    • Hester, G.1    Piontek, K.2
  • 15
    • 0020356629 scopus 로고
    • Structure of 2-keto-3-deoxy-6-phosphogluconate aldolase at 2.8 Å resolution
    • Mavridis, J.M., Hatada, M.H., Tulinsky, A. & Lebioda, D. (1992). Structure of 2-keto-3-deoxy-6-phosphogluconate aldolase at 2.8 Å resolution. J. Mol. Biol. 162, 419-444.
    • (1992) J. Mol. Biol. , vol.162 , pp. 419-444
    • Mavridis, J.M.1    Hatada, M.H.2    Tulinsky, A.3    Lebioda, D.4
  • 16
    • 0028773463 scopus 로고
    • The three-dimensional structure of N-acetylneuraminate lyase from Escherichia coli
    • Izard, T., Lawrence, M.C., Malby, R.L., Lilley, G.G. & Colman, P.M. (1994). The three-dimensional structure of N-acetylneuraminate lyase from Escherichia coli. Structure 2, 361-369.
    • (1994) Structure , vol.2 , pp. 361-369
    • Izard, T.1    Lawrence, M.C.2    Malby, R.L.3    Lilley, G.G.4    Colman, P.M.5
  • 17
    • 0028907826 scopus 로고
    • The crystal structure of dihydropicilinate synthase from Escherichia coli at 2.5 Å resolution
    • Mirwaldt, C., Korndörfer, I. & Huber, R. (1995). The crystal structure of dihydropicilinate synthase from Escherichia coli at 2.5 Å resolution. J. Mol. Biol. 246, 227-239.
    • (1995) J. Mol. Biol. , vol.246 , pp. 227-239
    • Mirwaldt, C.1    Korndörfer, I.2    Huber, R.3
  • 18
    • 0027285118 scopus 로고
    • A data-based reaction mechanism for type I fructose bisphosphate aldolase
    • Littlechild, J.A. & Watson, H.C. (1993). A data-based reaction mechanism for type I fructose bisphosphate aldolase. Trends Biol. Sci. 18, 36-39
    • (1993) Trends Biol. Sci. , vol.18 , pp. 36-39
    • Littlechild, J.A.1    Watson, H.C.2
  • 20
    • 0024490818 scopus 로고
    • Correct folding of circularly permuted variants of a βα barrel enzyme in vivo
    • Luger, K., Hommel, U., Herold, M., Hofsteenge, J. & Kirschner, K. (1989). Correct folding of circularly permuted variants of a βα barrel enzyme in vivo. Science 243, 206-210.
    • (1989) Science , vol.243 , pp. 206-210
    • Luger, K.1    Hommel, U.2    Herold, M.3    Hofsteenge, J.4    Kirschner, K.5
  • 21
    • 0029000740 scopus 로고
    • Swaposins; circular permutations within genes encoding sapsoin homologues
    • Ponting, C.P. & Russell, R.B. (1995). Swaposins; circular permutations within genes encoding sapsoin homologues. Trends Biol. Sci. 20, 179-180.
    • (1995) Trends Biol. Sci. , vol.20 , pp. 179-180
    • Ponting, C.P.1    Russell, R.B.2
  • 22
    • 0029360566 scopus 로고
    • Circular permutations of protein sequence: Not so rare?
    • Heinemann, U. & Hahn, M. (1995). Circular permutations of protein sequence: not so rare? Trends Biol. Sci. 20, 349-350.
    • (1995) Trends Biol. Sci. , vol.20 , pp. 349-350
    • Heinemann, U.1    Hahn, M.2
  • 23
    • 77956895467 scopus 로고
    • Aldolases
    • (Boyer, P.D., ed), Academic Press, New York, NY
    • Horecker, B.L., Tsolas, O. & Lai, C.Y. (1972). Aldolases. In The Enzymes. (Boyer, P.D., ed), vol. 7, pp. 213-258, Academic Press, New York, NY.
    • (1972) The Enzymes , vol.7 , pp. 213-258
    • Horecker, B.L.1    Tsolas, O.2    Lai, C.Y.3
  • 24
    • 0017159311 scopus 로고
    • Affinity labeling of a previously undetected essential lysyl residue in class I fructose bisphosphate aldolase
    • Hartman, F.C. & Brown, P.J. (1976). Affinity labeling of a previously undetected essential lysyl residue in class I fructose bisphosphate aldolase. J. Biol. Chem. 251, 3057-3062.
    • (1976) J. Biol. Chem. , vol.251 , pp. 3057-3062
    • Hartman, F.C.1    Brown, P.J.2
  • 26
    • 0002634621 scopus 로고
    • Maximum likelihood refinement of heavy atom parameters
    • (Wolf, W., Evans, P.R. & Leslie, A.G.W., eds), SERC Daresbury Laboratory, Warrington, Uk
    • Otwinowski, Z. (1991). Maximum likelihood refinement of heavy atom parameters. In Isomorphous Replacement and Anomalous Scattering. Proceedings of the CCP4 Study Weekend (Wolf, W., Evans, P.R. & Leslie, A.G.W., eds), pp. 80-88, SERC Daresbury Laboratory, Warrington, Uk.
    • (1991) Isomorphous Replacement and Anomalous Scattering. Proceedings of the CCP4 Study Weekend , pp. 80-88
    • Otwinowski, Z.1
  • 27
    • 0000858864 scopus 로고
    • SQUASH - Combining Constrainsts for Macromolecular Phase Refinement and Extension
    • Zhang, K.Y. (1993). SQUASH - Combining Constrainsts for Macromolecular Phase Refinement and Extension. Acta Cryst. D 49, 213-222.
    • (1993) Acta Cryst. D , vol.49 , pp. 213-222
    • Zhang, K.Y.1
  • 28
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project, Number 4, (1994). The CCP4 suite: programs for protein crystallography. Acta Cryst D 50, 760-763.
    • (1994) Acta Cryst D , vol.50 , pp. 760-763
  • 29
    • 0002552477 scopus 로고
    • A, yaap, asap, @#*? A set of averaging programs
    • (Dodson, E.J., Gover, S. & Wolf, W., eds), SERC Daresbury Laboratory, Warrington, UK
    • Jones, T.A., (1992). a, yaap, asap, @#*? A set of averaging programs. In CCP4 Study weekend 1992: Molecular replacement. (Dodson, E.J., Gover, S. & Wolf, W., eds), pp. 91-105, SERC Daresbury Laboratory, Warrington, UK.
    • (1992) CCP4 Study Weekend 1992: Molecular Replacement , pp. 91-105
    • Jones, T.A.1
  • 30
    • 0002208132 scopus 로고
    • Crystallographic refinement by simulated annealing: Application to crambin
    • Brünger, A. (1989). Crystallographic refinement by simulated annealing: application to crambin. Acta Cryst. A 45, 50-61.
    • (1989) Acta Cryst. A , vol.45 , pp. 50-61
    • Brünger, A.1
  • 31
    • 84944812409 scopus 로고
    • Improved coefficients for map calculation using partial structures with errors
    • Read, R.J. (1986). Improved coefficients for map calculation using partial structures with errors. Acta Cryst. A 42, 140-149.
    • (1986) Acta Cryst. A , vol.42 , pp. 140-149
    • Read, R.J.1
  • 32
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh, R.A. & Huber, R. (1991). Accurate bond and angle parameters for X-ray protein structure refinement. Acta Cryst. A 47, 392-400.
    • (1991) Acta Cryst. A , vol.47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2
  • 33
    • 0026597444 scopus 로고
    • Free R value: A novel statistical quantity for assessing the accuracy of crystal structure
    • Brünger, A. (1992). Free R value: a novel statistical quantity for assessing the accuracy of crystal structure. Nature 355, 472-475.
    • (1992) Nature , vol.355 , pp. 472-475
    • Brünger, A.1
  • 34
    • 0001513484 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. (1993). PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 946-950.
    • (1993) J. Appl. Cryst. , vol.26 , pp. 946-950
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 35
    • 0017411710 scopus 로고
    • The Protein Data Bank: A computer-based archival file for macromolecular structures
    • Bernstein, F. C., et al., & Tasumi, M. (1977). The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
    • (1977) J. Mol. Biol. , vol.112 , pp. 535-542
    • Bernstein, F.C.1    Tasumi, M.2
  • 36
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and chematic plots of protein structure
    • Kraulis, P.J. (1991). MOLSCRIPT: a program to produce both detailed and chematic plots of protein structure. J. Appl. Cryst. 24, 946-950.
    • (1991) J. Appl. Cryst. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 37
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen bond and geometrical features
    • Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure: pattern recognition of hydrogen bond and geometrical features. Biopolymers 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


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