메뉴 건너뛰기




Volumn 262, Issue 5, 1996, Pages 671-685

Minor groove binding ligands alter the rotational positioning of DNA fragments on nucleosome core particles

Author keywords

Distamycin; DNA rotational positioning; Hoechst 33258; Minor groove binding ligands; Nucleosome core particles

Indexed keywords

4 [5 (4 METHYL 1 PIPERAZINYL)[2,5' BI 1H BENZIMIDAZOL] 2' YL]PHENOL; CONGOCIDINE; DIMINAZENE ACETURATE; DISTAMYCIN A; DNA FRAGMENT; PROTEIN; SYNTHETIC DNA;

EID: 0030580078     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0544     Document Type: Article
Times cited : (30)

References (37)
  • 1
    • 0029059536 scopus 로고
    • DNA sequence preferences of several AT-selective minor groove binding ligands
    • Abu-Daya, A., Brown, P. M. & Fox, K. R. (1995). DNA sequence preferences of several AT-selective minor groove binding ligands. Nucl. Acids Res. 23, 3385-3392.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 3385-3392
    • Abu-Daya, A.1    Brown, P.M.2    Fox, K.R.3
  • 2
    • 0025272657 scopus 로고
    • Crystal structure of a berenil dodecamer complex: The role of water in sequence-specific ligand binding
    • Brown, D. G., Sanderson, M. R., Skelly, J. V., Jenkins, T. C., Brown, T., Garman, D. I. & Neidle, S. (1990). Crystal structure of a berenil dodecamer complex: the role of water in sequence-specific ligand binding. EMBO J. 9, 1329-1334.
    • (1990) EMBO J , vol.9 , pp. 1329-1334
    • Brown, D.G.1    Sanderson, M.R.2    Skelly, J.V.3    Jenkins, T.C.4    Brown, T.5    Garman, D.I.6    Neidle, S.7
  • 3
    • 0026654185 scopus 로고
    • Crystal structure of a berenil-d(CG-CAAATTTGCG) complex: An example of drug-DNA recognition based on sequence dependent structural features
    • Brown, D. G., Sanderson, M. R., Garman, E. & Neidle, S. (1992). Crystal structure of a berenil-d(CG-CAAATTTGCG) complex: an example of drug-DNA recognition based on sequence dependent structural features. J. Mol. Biol. 226, 481-490.
    • (1992) J. Mol. Biol. , vol.226 , pp. 481-490
    • Brown, D.G.1    Sanderson, M.R.2    Garman, E.3    Neidle, S.4
  • 4
    • 0023494886 scopus 로고
    • A bifurcated hydrogen-bonded conformation in the d(AT) base-pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin
    • Coll, M., Frederick, C. A., Wang, A. H.-J. & Rich, R. (1987). A bifurcated hydrogen-bonded conformation in the d(AT) base-pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. Proc. Natl Acad. Sci. USA, 84, 8385-8389.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 8385-8389
    • Coll, M.1    Frederick, C.A.2    Wang, A.H.-J.3    Rich, R.4
  • 5
    • 0023181481 scopus 로고
    • Sequence-specific positioning of core histones on an 860 base pair DNA: Experiment and theory
    • Drew, H. R. & Calladine, C. R. (1987). Sequence-specific positioning of core histones on an 860 base pair DNA: experiment and theory. J. Mol. Biol. 195, 143-173.
    • (1987) J. Mol. Biol. , vol.195 , pp. 143-173
    • Drew, H.R.1    Calladine, C.R.2
  • 6
    • 0021140818 scopus 로고
    • DNA structural variations in the E. Col. tyrT promoter
    • Drew, H. R. & Travers, A. A. (1984). DNA structural variations in the E. col. tyrT promoter. Cell, 37, 491-502.
    • (1984) Cell , vol.37 , pp. 491-502
    • Drew, H.R.1    Travers, A.A.2
  • 7
    • 0022230224 scopus 로고
    • DNA bending and its relation to nucleosome positioning
    • Drew, H. R. & Travers, A. A. (1985). DNA bending and its relation to nucleosome positioning. J. Mol. Biol. 186, 773-790.
    • (1985) J. Mol. Biol. , vol.186 , pp. 773-790
    • Drew, H.R.1    Travers, A.A.2
  • 10
    • 0026523410 scopus 로고
    • Wrapping of genomic polydA·polydT around nucleosome core particles
    • Fox, K. R. (1992). Wrapping of genomic polydA·polydT around nucleosome core particles. Nucl. Acids Res. 20, 1235-1242.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 1235-1242
    • Fox, K.R.1
  • 11
    • 0027328088 scopus 로고
    • Interaction of mithramycin with DNA fragments complexed with nucleosome core particles: Comparison with distamycin and echinomycin
    • Fox, K. R. & Cons, B. M. G. (1993). Interaction of mithramycin with DNA fragments complexed with nucleosome core particles: comparison with distamycin and echinomycin. Biochemistry, 32, 7162-7171.
    • (1993) Biochemistry , vol.32 , pp. 7162-7171
    • Fox, K.R.1    Cons, B.M.G.2
  • 13
    • 0026010309 scopus 로고
    • Histone contributions to the structure of DNA in the nucleosome
    • Hayes, J. J., Clark, D. J. & Wolffe, A. P. (1991a). Histone contributions to the structure of DNA in the nucleosome. Proc. Natl Acad. Sci. USA, 88, 6829-6833.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 6829-6833
    • Hayes, J.J.1    Clark, D.J.2    Wolffe, A.P.3
  • 14
    • 0026094357 scopus 로고
    • The histone core exerts a dominant constraint on the structure of DNA in a nucleosome
    • Hayes, J. J., Bashkin, J., Tullius, T. D. & Wolffe, A. P. (1991b). The histone core exerts a dominant constraint on the structure of DNA in a nucleosome. Biochemistry, 30, 8434-8440.
    • (1991) Biochemistry , vol.30 , pp. 8434-8440
    • Hayes, J.J.1    Bashkin, J.2    Tullius, T.D.3    Wolffe, A.P.4
  • 16
    • 0002628632 scopus 로고
    • Netropsin and the lexitropsins: The search for sequence-specific minorgroove-binding ligands
    • (Propst, C. L. & Perun, T. J., eds), Marcel Dekker Inc., New York
    • Kopka, M. L. & Larsen, T. A. (1992). Netropsin and the lexitropsins: the search for sequence-specific minorgroove-binding ligands. In: Nucleic Acids Targeted Drug Design (Propst, C. L. & Perun, T. J., eds), pp. 303-374, Marcel Dekker Inc., New York.
    • (1992) Nucleic Acids Targeted Drug Design , pp. 303-374
    • Kopka, M.L.1    Larsen, T.A.2
  • 17
    • 0016221697 scopus 로고
    • Chromatin structure: A repeating unit of histones and DNA
    • Kornberg, R. D. (1974). Chromatin structure: a repeating unit of histones and DNA. Science, 184, 868-871.
    • (1974) Science , vol.184 , pp. 868-871
    • Kornberg, R.D.1
  • 18
    • 0019867238 scopus 로고
    • Nucleosomes will not form on double-stranded RNA or over polydA·polydT tracts in recombinant DNAs
    • Kunkel, G. R. & Martinson, H. G. (1981). Nucleosomes will not form on double-stranded RNA or over polydA·polydT tracts in recombinant DNAs. Nucl. Acids Res. 9, 6859-6888.
    • (1981) Nucl. Acids Res. , vol.9 , pp. 6859-6888
    • Kunkel, G.R.1    Martinson, H.G.2
  • 20
    • 0025179321 scopus 로고
    • Interaction of berenil with the tyrT DNA sequence studied by footprinting and molecular modelling. Implications for the design of sequence-specific DNA recognition agents
    • Laughton, C. A., Jenkins, T. C., Fox, K. R. & Neidle, S. (1990). Interaction of berenil with the tyrT DNA sequence studied by footprinting and molecular modelling. Implications for the design of sequence-specific DNA recognition agents. Nucl. Acids Res. 18, 4479-4488.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 4479-4488
    • Laughton, C.A.1    Jenkins, T.C.2    Fox, K.R.3    Neidle, S.4
  • 21
    • 0023008677 scopus 로고
    • Echinomycin and distamycin induce rotation of nucleosome core DNA
    • Low, C. M. L., Drew, H. R. & Waring, M. J. (1986). Echinomycin and distamycin induce rotation of nucleosome core DNA. Nucl. Acids Res. 14, 6785-6801.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 6785-6801
    • Low, C.M.L.1    Drew, H.R.2    Waring, M.J.3
  • 22
    • 0000321018 scopus 로고
    • Design of sequence-specific agents: Lexitropsins
    • (Neidle, S. & Waring, M. J., eds), Macmillan, London
    • Lown, J. W. (1993). Design of sequence-specific agents: Lexitropsins. In Molecular Aspects of Anticancer Drug-DNA Interactions (Neidle, S. & Waring, M. J., eds), vol. 1, pp. 322-355, Macmillan, London.
    • (1993) Molecular Aspects of Anticancer Drug-DNA Interactions , vol.1 , pp. 322-355
    • Lown, J.W.1
  • 23
    • 0024395456 scopus 로고
    • Formation, stability and core histone positioning of nucleosomes reassembled on bent and other nucleosome-derived DNA
    • Pennings, S., Muyldermans, S., Meersseman, G. & Wyns, L. (1989). Formation, stability and core histone positioning of nucleosomes reassembled on bent and other nucleosome-derived DNA. J. Mol. Biol. 207, 183-192.
    • (1989) J. Mol. Biol. , vol.207 , pp. 183-192
    • Pennings, S.1    Muyldermans, S.2    Meersseman, G.3    Wyns, L.4
  • 24
    • 0023626977 scopus 로고
    • Binding of hoechst 33258 to the minor groove of B-DNA
    • Pjura, P. E., Grzeskowiak, K. & Dickerson, R. E. (1987). Binding of Hoechst 33258 to the minor groove of B-DNA. J. Mol. Biol. 197, 257-271.
    • (1987) J. Mol. Biol. , vol.197 , pp. 257-271
    • Pjura, P.E.1    Grzeskowiak, K.2    Dickerson, R.E.3
  • 25
    • 0022995895 scopus 로고
    • Antibiotics which can alter the rotational orientation of nucleosome core DNA
    • Portugal, J. & Waring, M. J. (1986). Antibiotics which can alter the rotational orientation of nucleosome core DNA. Nucl. Acids Res. 14, 8735-8754.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 8735-8754
    • Portugal, J.1    Waring, M.J.2
  • 26
    • 0023114759 scopus 로고
    • Interaction of nucleosome core particles with distamycin and echinomycin; analysis of the effect of DNA sequences
    • Portugal, J. & Waring, M. J. (1987a). Interaction of nucleosome core particles with distamycin and echinomycin; analysis of the effect of DNA sequences. Nucl. Acids Res. 15, 885-903.
    • (1987) Nucl. Acids Res. , vol.15 , pp. 885-903
    • Portugal, J.1    Waring, M.J.2
  • 27
    • 0023566989 scopus 로고
    • Analysis of the effects of antibiotics on the structure of nucleosome core particles determined by DNaase I cleavage
    • Portugal, J. & Waring, M. J. (1987b). Analysis of the effects of antibiotics on the structure of nucleosome core particles determined by DNaase I cleavage. Biochimie, 69, 825-840.
    • (1987) Biochimie , vol.69 , pp. 825-840
    • Portugal, J.1    Waring, M.J.2
  • 28
    • 0026357505 scopus 로고
    • Poly[d(A·T)] and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily
    • Puhl, H. L., Gudibande, S. R. & Behe, M. J. (1991). Poly[d(A·T)] and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily. J. Mol. Biol. 222, 1149-1160.
    • (1991) J. Mol. Biol. , vol.222 , pp. 1149-1160
    • Puhl, H.L.1    Gudibande, S.R.2    Behe, M.J.3
  • 29
    • 0022500637 scopus 로고
    • Deletion analysis of a DNA sequence that positions itself precisely on the nucleosome core
    • Ramsay, N. (1986). Deletion analysis of a DNA sequence that positions itself precisely on the nucleosome core. J. Mol. Biol. 189, 179-188.
    • (1986) J. Mol. Biol. , vol.189 , pp. 179-188
    • Ramsay, N.1
  • 30
    • 0021760689 scopus 로고
    • Structure of the nucleosome core particle at 7 Å resolution
    • Richmond, T. J., Finch,. T., Rushton, B., Rhodes, D. & Klug, A. (1974). Structure of the nucleosome core particle at 7 Å resolution. Nature, 311, 532-537.
    • (1974) Nature , vol.311 , pp. 532-537
    • Richmond, T.J.1    Finch, T.2    Rushton, B.3    Rhodes, D.4    Klug, A.5
  • 31
    • 0023001414 scopus 로고
    • Sequence periodicities in chicken nucleosome core DNA
    • Satchwell, S. C., Drew, H. R. & Travers, A. A. (1986). Sequence periodicities in chicken nucleosome core DNA. J. Mol. Biol. 191, 659-675.
    • (1986) J. Mol. Biol. , vol.191 , pp. 659-675
    • Satchwell, S.C.1    Drew, H.R.2    Travers, A.A.3
  • 32
    • 0001079085 scopus 로고
    • Artificial nucleosome positioning sequences
    • Schrader, T. E. & Crothers, D. M. (1989). Artificial nucleosome positioning sequences. Proc. Natl Acad. Sci. USA, 86, 7418-7422.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 7418-7422
    • Schrader, T.E.1    Crothers, D.M.2
  • 34
    • 0024373679 scopus 로고
    • DNA conformation and protein binding
    • Travers, A. A. (1987). DNA conformation and protein binding. Annu. Rev. Biochem. 58, 427-452.
    • (1987) Annu. Rev. Biochem. , vol.58 , pp. 427-452
    • Travers, A.A.1
  • 35
    • 0023657337 scopus 로고
    • The bending of DNA in nucleosomes and its wider implications
    • Travers, A. A. & Klug, A. (1989). The bending of DNA in nucleosomes and its wider implications. Phil. Trans. Roy. Soc. ser. B, 317, 537-561.
    • (1989) Phil. Trans. Roy. Soc. Ser. B , vol.317 , pp. 537-561
    • Travers, A.A.1    Klug, A.2
  • 37
    • 0028176808 scopus 로고
    • Nucleosome positioning and modification - Chromatin structures that potentiate transcription
    • Wolffe A. P. (1994). Nucleosome positioning and modification - chromatin structures that potentiate transcription. Trends Biochem. Sci. 19, 240-244.
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 240-244
    • Wolffe, A.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.