Instability of repeated dinucleotides in bacteriophage T7 genomes

Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis

Volumn 354, Issue 1, 1996, Pages 113-122

  Yang, Yi ^a   Masker, Warren ^a  

^a TEMPLE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; DNA POLYMERASE; LIGASE;

ARTICLE; BACTERIOPHAGE T7; DNA SEQUENCE; ESCHERICHIA COLI; GENOME; NONHUMAN; PRIORITY JOURNAL;

ESCHERICHIA COLI;

EID: 0030570507     PISSN: 00275107     EISSN: None     Source Type: Journal    
DOI: 10.1016/0027-5107(96)00049-8     Document Type: Article

References (38)

1. Bichara, M., S. Schumacher and R.P.P. Fuchs (1995) Genetic instability within monotonous runs of CpG sequences in Escherichia coli, Genetics, 140, 897-907.
2. Caskey, C.T., A. Pizzuti, F. Ying-Hui, R.G. Fenwick and D.L. Nelson (1992) Triplet repeat mutations in human disease, Science, 256, 784-789.
3. 6-methylguanine during DNA synthesis, Proc. Natl. Acad. Sci. USA, 79, 7440-7444.
4. Dunn, J.J. and F.W. Studier (1983) The complete nucleotide sequence of bacteriophage T7 DNA and the location of T7 genetic elements, J. Mol. Biol., 226, 477-535.
5. Drake, J.W. (1991) Spontaneous mutation, Annu. Rev. Genet., 25, 125-146.
6. Foster, P.L. and J.M. Trimarchi (1994) Adaptive reversion of a frameshift mutation in Escherichia coli by simple base deletions in homopolymeric runs, Science, 265, 407-409.
7. Huber, H.E., S. Tabor and C.C. Richardson (1987) Escherichia coli thioredoxin stabilizes complexes of bacteriophage T7 DNA polymerase and primed templates, J. Biol. Chem., 262, 16214-16223.
8. Joyce, C.M. and T.A. Steitz (1994) Function and structure relationships in DNA polymerases, Annu. Rev. Biochem., 63, 777-822.
9. Kaiser, V.L. and L.S. Ripley (1995) DNA nick processing by exonuclease and polymerase activities of bacteriophage T4 DNA polymerase accounts for acridine-induced mutation specificities in T4, Proc. Natl. Acad. Sci. USA, 92, 2234-2238.
10. Kim, Y.T. and C.C. Richardson. (1993) Bacteriophage T7 gene 2.5 protein: An essential protein for DNA replication, Proc. Natl. Acad. Sci. USA, 90, 10173-10177.
11. Kong, D. and W. Masker (1994) Deletion between direct repeats in T7 DNA stimulated by double strand breaks, J. Bacteriol., 176, 5904-5911.
12. Kuemmerle, N.B. and W.E. Masker (1977) In vitro packaging of UV radiation damaged DNA from bacteriophage T7, J. Virol., 23, 509-516.
13. Kunkel, T.A. (1990) Misalignment-mediated DNA synthesis errors, Biochemistry, 29, 8003-8011.
14. Kunkel, T.A., S.S. Patel and K.A. Johnson (1994) Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit, Proc. Natl. Acad. Sci. USA, 91, 6830-6834.
15. Levinson, G. and G.A. Gutman (1987) High frequency of short frameshifts in poly-GA/TC tandem repeats borne by bacteriophage M13 in Escherichia coli K-12, Nucleic Acids Res., 15, 5323-5338.
16. Masamune, Y., G.D. Frenkel and C.C. Richardson (1971) A mutant of bacteriophage T7 deficient in polynucleotide ligase, J. Biol. Chem., 246, 6874-6879.
17. Masker, W. (1986) In vitro packaging of heteroduplex bacteriophage T7 DNA: Evidence for repair of mismatched bases, J. Bacteriol., 168, 762-768.
18. Masker, W. and M.A. Crissey (1993) The effect of the 3′ → 5′ exonuclease of T7 DNA polymerase on frameshifts and deletions, Mutation. Res., 301, 235-241.
19. Mendelman, L.V., S.M. Notarnicola and C.C. Richardson (1992) Roles of bacteriophage T7 gene 4 proteins in providing primase and helicase functions in vivo, Proc. Natl. Acad. Sci. USA, 89, 10638-10642.
20. Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.
21. Ollis, D.L., C. Kline and T.A. Steitz (1985) Domain of E. coli DNA polymerase I showing sequence homology to T7 DNA polymerase, Nature, 313, 818-819.
22. Pierce, J. and W. Masker (1989) Genetic deletions between directly repeated sequences in bacteriophage T7, Mol. Gen. Genet., 217, 215-222.
23. Pierce, J.C. and W. Masker (1992) Frameshift mutagenesis in bacteriophage T7, Mutation Res., 281, 81-87.
24. Richardson, C.C. (1983) Bacteriophage T7: Minimal requirements for the replication of a duplex DNA molecule, Cell, 33, 335-337.
25. Ripley, L.S. (1990) Frameshift mutation. Determinants of specificity, Annu. Rev. Gene., 24, 189-213.
26. Rosenberg, S.M., S. Longerich, P. Gee and R.S. Harris (1994) Adaptive mutation by deletions in small mononucleotide repeats, Science, 265, 405-407.
27. Sagher, D., E. Turkington, S. Acharya, and B. Strauss (1994) Production of UV-induced frameshift mutations in vitro by DNA polymerases deficient in 3′ → 5′ exonuclease activity, J. Mol. Biol., 240, 226-242.
28. Sambrook, J., E.F. Fritsch and T. Maniatis (1989) Molecular cloning, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
29. Saito, H. and S.S. Richardson (1981) Genetic analysis of gene 1.2 of bacteriophage T7: isolation of a mutant of Escherichia coli unable to support the growth of T7 1.2 mutants, J. Virol., 37, 343-351.
30. Sanger, F., S. Nicklen and A.R. Coulson (1977) DNA sequencing with chain terminating inhibitors, Proc. Natl. Acad. Sci. USA, 74, 5463-5467.
31. Strand, M., T.A. Prolla, R.M. Liskay and T.D. Petes (1993) Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting mismatch repair, Nature 365, 274-275.
32. Smith, R.D. and R.C. Miller, Jr. (1981) Replication and plasmid-bacteriophage recombination, Virology, 115, 223-236.
33. Studier, F.W. (1969) The genetics and physiology of bacteriophage T7, Virology, 39, 562-574.
34. Studier, F.W. (1972) Bacteriophage T7, Science 176, 367-376.
35. Streisenger, G., Y. Okada, J. Emrich, J. Newton, A. Tsugita, E. Terzaghi and M. Inouye (1966) Frameshift mutagenesis and the genetic code, Cold Spring Harbor Symp. Quant. Biol., 31, 77-84.
36. Tabor, S., H.E. Huber and C.C. Richardson (1989) Selective inactivation of the exonuclease activity of bacteriophage T7 DNA polymerase by in vitro mutagenesis, J. Biol. Chem., 264, 6447-6458.
37. Yang, Y. and W. Masker (1996) Deletion during recombination in bacteriophage T7, Mutation Res., 349, 21-32.
38. Wang, F.J. and L.S. Ripley (1994) DNA sequence effects on single base deletions arising during DNA polymerization in vitro by Escherichia coli Klenow Fragment Polymerase, Genetics, 136, 709-719.