-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, W Gish, W Miller, EW Myers and DJ Lipman. 1990. Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0026793824
-
Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface
-
Amy PS, DL Haldeman, D Rigelberg, DH Hall and C Russel. 1992. Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface. Appl Environ Microbiol 58: 3367-3373.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 3367-3373
-
-
Amy, P.S.1
Haldeman, D.L.2
Rigelberg, D.3
Hall, D.H.4
Russel, C.5
-
3
-
-
0003039149
-
Diversity of microbial communities
-
(Marshall KC ed) Plenum Press, NY, London
-
Atlas RM. 1984. Diversity of microbial communities. In: Advances in Microbial Ecology. Vol 7 (Marshall KC ed) pp 1-147, Plenum Press, NY, London.
-
(1984)
Advances in Microbial Ecology
, vol.7
, pp. 1-147
-
-
Atlas, R.M.1
-
5
-
-
0344543851
-
Basins of the Rocky Mountain region
-
(Sloss LL, ed), The Geological Society of America, Boulder
-
Baars DL, BL Bartleson, CE Chapin, BF Curtis, RH DeVoto, JR Everett, RC Johnson, CM Molenaar, F Peterson, CJ Schenk, JD Love, IS Merin, PR Rose, RT Ryder, NB Waechter and LA Woodward. 1988. Basins of the Rocky Mountain region. In: The Geology of North America. Vol D-2, Sedimentary Cover - North American Craton: US (Sloss LL, ed), pp 109-220, The Geological Society of America, Boulder.
-
(1988)
The Geology of North America. Vol D-2, Sedimentary Cover - North American Craton: US
, pp. 109-220
-
-
Baars, D.L.1
Bartleson, B.L.2
Chapin, C.E.3
Curtis, B.F.4
DeVoto, R.H.5
Everett, J.R.6
Johnson, R.C.7
Molenaar, C.M.8
Peterson, F.9
Schenk, C.J.10
Love, J.D.11
Merin, I.S.12
Rose, P.R.13
Ryder, R.T.14
Waechter, N.B.15
Woodward, L.A.16
-
6
-
-
0024845067
-
Numbers, diversity, and morphological characteristics of aerobic chemoheterotrophic bacteria in deep subsurface sediments from a site in South Carolina
-
Balkwill DL. 1989. Numbers, diversity, and morphological characteristics of aerobic chemoheterotrophic bacteria in deep subsurface sediments from a site in South Carolina. Geomicrobiol J 7: 33-52.
-
(1989)
Geomicrobiol J
, vol.7
, pp. 33-52
-
-
Balkwill, D.L.1
-
8
-
-
0003659735
-
-
Williams & Wilkins, Baltimore
-
Bergey's Manual of Determinative Bacteriology. Ninth edn. 1994. (Holt JG, NR Krieg, PHA Sneath, JT Staley and ST Williams, eds), pp 488, 510, Williams & Wilkins, Baltimore.
-
(1994)
Bergey's Manual of Determinative Bacteriology. Ninth Edn.
, pp. 488
-
-
Holt, J.G.1
Krieg, N.R.2
Sneath, P.H.A.3
Staley, J.T.4
Williams, S.T.5
-
10
-
-
0002723031
-
Statistical sampling of bacteria strains and its use in bacteria diversity measurement
-
Bianchi MAG and AJM Bianchi. 1982. Statistical sampling of bacteria strains and its use in bacteria diversity measurement. Microbiol Ecol 8: 61-69.
-
(1982)
Microbiol Ecol
, vol.8
, pp. 61-69
-
-
Bianchi, M.A.G.1
Bianchi, A.J.M.2
-
11
-
-
0029120869
-
Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment
-
Boivin-Jahns V, A Bianchi, R Ruimy, J Garcin, S Daumas and R Christen. 1995. Comparison of phenotypical and molecular methods for the identification of bacterial strains isolated from a deep subsurface environment. Appl Environ Microbiol 61: 3400-3406.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3400-3406
-
-
Boivin-Jahns, V.1
Bianchi, A.2
Ruimy, R.3
Garcin, J.4
Daumas, S.5
Christen, R.6
-
12
-
-
0003121846
-
Morphological and cultural comparison of microorganisms in surface soil and subsurface sediments at a pristine study site in Oklahoma
-
Bone TL and DL Balkwill. 1988. Morphological and cultural comparison of microorganisms in surface soil and subsurface sediments at a pristine study site in Oklahoma. Microbiol Ecol 16: 49-64.
-
(1988)
Microbiol Ecol
, vol.16
, pp. 49-64
-
-
Bone, T.L.1
Balkwill, D.L.2
-
13
-
-
0001007991
-
Microbiology of vadose zone paleozols in South Central Washington State
-
Brockman FJ, TL Kieft, LK Fredrickson, BN Bjornstad, SW Li, W Spangenburg and PE Long. 1992. Microbiology of vadose zone paleozols in South Central Washington State. Microbiol Ecol 23: 279-301.
-
(1992)
Microbiol Ecol
, vol.23
, pp. 279-301
-
-
Brockman, F.J.1
Kieft, T.L.2
Fredrickson, L.K.3
Bjornstad, B.N.4
Li, S.W.5
Spangenburg, W.6
Long, P.E.7
-
14
-
-
0025311782
-
Rates of microbial metabolism in deep coastal plain aquifers
-
Chapelle FH and DR Lovely. 1990. Rates of microbial metabolism in deep coastal plain aquifers. Appl Environ Microbiol 56: 1865-1874.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1865-1874
-
-
Chapelle, F.H.1
Lovely, D.R.2
-
15
-
-
0026632484
-
Innovative techniques for collection of saturated and unsaturated subsurface basalts and sediments for microbiological characterization
-
Colwell FS, CJ Stormberg, TJ Phelps, SA Birnbaum, J McKinley, SA Rawson, C Veverka, S Goodwin, PE Long, BF Russell, T Garland, D Thompson, P Skinner and S Grover. 1992. Innovative techniques for collection of saturated and unsaturated subsurface basalts and sediments for microbiological characterization. J Microbiol Meth 15: 279-292.
-
(1992)
J Microbiol Meth
, vol.15
, pp. 279-292
-
-
Colwell, F.S.1
Stormberg, C.J.2
Phelps, T.J.3
Birnbaum, S.A.4
McKinley, J.5
Rawson, S.A.6
Veverka, C.7
Goodwin, S.8
Long, P.E.9
Russell, B.F.10
Garland, T.11
Thompson, D.12
Skinner, P.13
Grover, S.14
-
16
-
-
0027801562
-
Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages
-
DeLong EF, DG Franks and AL Aldrerge. 1993. Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages. Limnol Oceonogr 38: 924-934.
-
(1993)
Limnol Oceonogr
, vol.38
, pp. 924-934
-
-
DeLong, E.F.1
Franks, D.G.2
Aldrerge, A.L.3
-
17
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards U, T Rogall, H Bloecker, M Erode and EC Boettger. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17: 7843-7853.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Bloecker, H.3
Erode, M.4
Boettger, E.C.5
-
19
-
-
0025919183
-
Phylogenetical diversity and distribution of heterotrophic bacteria in deep Cretaceous sediments of the Atlantic Coastal Plain
-
Fredrickson JK, DL Balkwill, JM Zachara, S-MW Li, FJ Brockman and MA Simmons. 1991. Phylogenetical diversity and distribution of heterotrophic bacteria in deep Cretaceous sediments of the Atlantic Coastal Plain. Appl Environ Microbiol 57: 402-411.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 402-411
-
-
Fredrickson, J.K.1
Balkwill, D.L.2
Zachara, J.M.3
Li, S.-M.W.4
Brockman, F.J.5
Simmons, M.A.6
-
20
-
-
0024849887
-
Lithotrophic and heterotrophic bacteria in deep subsurface sediments and their relation to sediment properties
-
Fredrickson JK, TR Garland, RJ Hicks, JM Thomas, SW Li and KM McFadden. 1989. Lithotrophic and heterotrophic bacteria in deep subsurface sediments and their relation to sediment properties. Geomicrobiol J 7: 53-66.
-
(1989)
Geomicrobiol J
, vol.7
, pp. 53-66
-
-
Fredrickson, J.K.1
Garland, T.R.2
Hicks, R.J.3
Thomas, J.M.4
Li, S.W.5
McFadden, K.M.6
-
21
-
-
0028236811
-
Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities
-
Haack SK, H Garshow, DA Odelson, LJ Forney and MJ Klug. 1994. Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl Environ Microbiol 60: 2483-2493.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 2483-2493
-
-
Haack, S.K.1
Garshow, H.2
Odelson, D.A.3
Forney, L.J.4
Klug, M.J.5
-
22
-
-
0027480127
-
Diversity within a colony morphotype: Implications for ecological research
-
Haldeman DL and PS Amy. 1993. Diversity within a colony morphotype: implications for ecological research. Appl Environ Microbiol 59: 933-935.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 933-935
-
-
Haldeman, D.L.1
Amy, P.S.2
-
24
-
-
0028989398
-
Microbial growth and resuscitation alter community structure after perturbation
-
Haldeman DL, PS Amy, D Ringelberg, DC White, RE Garen and WC Ghiorse. 1995. Microbial growth and resuscitation alter community structure after perturbation. FEMS Microbiol Ecol 17: 27-38.
-
(1995)
FEMS Microbiol Ecol
, vol.17
, pp. 27-38
-
-
Haldeman, D.L.1
Amy, P.S.2
Ringelberg, D.3
White, D.C.4
Garen, R.E.5
Ghiorse, W.C.6
-
25
-
-
0028990405
-
Hot subterranean biosphere in a continental oil reservoir
-
L'Haridon S, A-L Reysenbach, P Glénat, D Prieur and C Jeanthon. 1995. Hot subterranean biosphere in a continental oil reservoir. Nature 377: 223-224.
-
(1995)
Nature
, vol.377
, pp. 223-224
-
-
L'Haridon, S.1
Reysenbach, A.-L.2
Glénat, P.3
Prieur, D.4
Jeanthon, C.5
-
27
-
-
0025374982
-
Molecular analysis of deep-subsurface bacteria
-
Jiménez L. 1990. Molecular analysis of deep-subsurface bacteria. Appl Environ Microbiol 56: 2108-2113.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 2108-2113
-
-
Jiménez, L.1
-
28
-
-
0025890074
-
Iso- and anteiso-fatty acids in bacteria: Biosynthesis, function, and taxonomic significance
-
Kaneda T. 1991. Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance. Microbiol Rev 55: 288-302.
-
(1991)
Microbiol Rev
, vol.55
, pp. 288-302
-
-
Kaneda, T.1
-
29
-
-
0027795867
-
Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites
-
Kieft TL, PS Amy, FJ Brockman, JK Fredrickson, BN Bjornstad and LL Rosacker. 1993. Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites. Microbiol Ecol 26: 59-78.
-
(1993)
Microbiol Ecol
, vol.26
, pp. 59-78
-
-
Kieft, T.L.1
Amy, P.S.2
Brockman, F.J.3
Fredrickson, J.K.4
Bjornstad, B.N.5
Rosacker, L.L.6
-
30
-
-
0028982333
-
Microbiological comparisons within and across contiguous lacustrine, paleosol, and fluvial subsurface sediments
-
Kieft TL, JK Fredrickson, JP McKinley, BN Bjornstad, SA Rawson, TJ Phelps, FJ Brockman and SM Pfiffner. 1995. Microbiological comparisons within and across contiguous lacustrine, paleosol, and fluvial subsurface sediments. Appl Environ Microbiol 61: 749-757.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 749-757
-
-
Kieft, T.L.1
Fredrickson, J.K.2
McKinley, J.P.3
Bjornstad, B.N.4
Rawson, S.A.5
Phelps, T.J.6
Brockman, F.J.7
Pfiffner, S.M.8
-
31
-
-
0028070151
-
Changes in ester-linked phospholipid fatty acids profiles of subsurface bacteria during starvation and desiccation in a porous medium
-
Kieft TL, DB Ringelberg and DC White. 1994. Changes in ester-linked phospholipid fatty acids profiles of subsurface bacteria during starvation and desiccation in a porous medium. Appl Environ Microbiol 60: 3292-3299.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 3292-3299
-
-
Kieft, T.L.1
Ringelberg, D.B.2
White, D.C.3
-
32
-
-
0002591641
-
Aerobic and anaerobic microbial activity in deep subsurface sediments from the Savannah River plant
-
Madsen EL and J-M Ballag. 1989. Aerobic and anaerobic microbial activity in deep subsurface sediments from the Savannah River plant. Geomicrobiol J 7: 93-101.
-
(1989)
Geomicrobiol J
, vol.7
, pp. 93-101
-
-
Madsen, E.L.1
Ballag, J.-M.2
-
33
-
-
0346055773
-
Growth of plaque bacteria in pellet culture and the lytic effect of fluoride
-
(Stiles HM, WJ Loesche and TC O'Brien, eds), Information Retrieval Inc, Washington DC
-
Marquis RE, RJ Lesher and R Bronsteen. 1976. Growth of plaque bacteria in pellet culture and the lytic effect of fluoride. In: Microbial Aspects of Dental Caries (Stiles HM, WJ Loesche and TC O'Brien, eds), Vol III, pp 821-827, Information Retrieval Inc, Washington DC.
-
(1976)
Microbial Aspects of Dental Caries
, vol.3
, pp. 821-827
-
-
Marquis, R.E.1
Lesher, R.J.2
Bronsteen, R.3
-
34
-
-
0001823647
-
Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
-
(Akkermans ADL, JD van Elsas and FJ de Bruijn, eds), Kluwer Academic Publishers, Dordrecht, Boston; London
-
Massol-Deya AA, DA Odelson, RF Hickey and JM Tiedje. 1995. Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). In: Molecular Microbial Ecology Manual (Akkermans ADL, JD van Elsas and FJ de Bruijn, eds), pp 3.3.2.1-8, Kluwer Academic Publishers, Dordrecht, Boston; London.
-
(1995)
Molecular Microbial Ecology Manual
-
-
Massol-Deya, A.A.1
Odelson, D.A.2
Hickey, R.F.3
Tiedje, J.M.4
-
35
-
-
0030049354
-
Radioresistance of Deinococcus radiodurans: Functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation
-
Mattimore V and JR Battista. 1996. Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J Bacteriol 178: 633-637.
-
(1996)
J Bacteriol
, vol.178
, pp. 633-637
-
-
Mattimore, V.1
Battista, J.R.2
-
36
-
-
25444518425
-
Oligotrophic microorganisms as a special evolutionary group of prokaryotes
-
(Hattory T, Y Ishida, Y Maruyama, RY Morita and A Uchida, eds), Japan Scientific Society Press
-
Nikitin DI and IV Zlatkin. 1989. Oligotrophic microorganisms as a special evolutionary group of prokaryotes. In: Recent Advances in Microbial Ecology (Hattory T, Y Ishida, Y Maruyama, RY Morita and A Uchida, eds), pp 94-99, Japan Scientific Society Press.
-
(1989)
Recent Advances in Microbial Ecology
, pp. 94-99
-
-
Nikitin, D.I.1
Zlatkin, I.V.2
-
37
-
-
0028166471
-
Factors influencing the abundance and metabolic capacities of microorganisms in Eastern Coastal Plain sediments
-
Phelps TJ, SM Pfiffner, KA Sargent and DC White. 1994. Factors influencing the abundance and metabolic capacities of microorganisms in Eastern Coastal Plain sediments. Microbiol Ecol 28: 351-364.
-
(1994)
Microbiol Ecol
, vol.28
, pp. 351-364
-
-
Phelps, T.J.1
Pfiffner, S.M.2
Sargent, K.A.3
White, D.C.4
-
38
-
-
0021971186
-
A new medium for the enumeration and subculture of bacteria from potable water
-
Reasoner DJ and EE Geldreich. 1985. A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49: 1-7.
-
(1985)
Appl Environ Microbiol
, vol.49
, pp. 1-7
-
-
Reasoner, D.J.1
Geldreich, E.E.2
-
39
-
-
0028956921
-
Strategies for phylogenetic characterization of subsurface bacteria
-
Reeves RH, JY Reeves and DL Balkwill. 1995. Strategies for phylogenetic characterization of subsurface bacteria. J Microbiol Meth 21: 235-251.
-
(1995)
J Microbiol Meth
, vol.21
, pp. 235-251
-
-
Reeves, R.H.1
Reeves, J.Y.2
Balkwill, D.L.3
-
41
-
-
0001859085
-
'Tracking' a strain using the microbial identification system
-
Sasser M. 1990. 'Tracking' a strain using the microbial identification system. MIDI Technical Note #102.
-
(1990)
MIDI Technical Note #102
-
-
Sasser, M.1
-
42
-
-
0004469194
-
Analysis of pigments: Carotenoids and related polyenes
-
(Goodfellow M and AG O'Donnell, eds), J Wiley and Sons, Chichester
-
Schmidt K, A Connor and G Britton. 1994. Analysis of pigments: carotenoids and related polyenes. In: Chemical Methods in Prokaryotic Systematics (Goodfellow M and AG O'Donnell, eds), pp 403-461, J Wiley and Sons, Chichester.
-
(1994)
Chemical Methods in Prokaryotic Systematics
, pp. 403-461
-
-
Schmidt, K.1
Connor, A.2
Britton, G.3
-
43
-
-
0343342350
-
Rep-PCR mediated genomic fingerprinting of rhizobia and computer-assisted phylogenetic pattern analysis
-
Schneider M and FJ de Bruijn. 1996. Rep-PCR mediated genomic fingerprinting of rhizobia and computer-assisted phylogenetic pattern analysis. World J Microbiol Biotechnol 12: 244-248.
-
(1996)
World J Microbiol Biotechnol
, vol.12
, pp. 244-248
-
-
Schneider, M.1
De Bruijn, F.J.2
-
44
-
-
0027337265
-
Isolation of typical marine bacteria by dilution culture: Growth, maintenance, and characteristics of isolates under laboratory conditions
-
Schut F, EJ deVries, JC Gottschal, B Robertson, W Harder, RA Prins and DK Button. 1993. Isolation of typical marine bacteria by dilution culture: growth, maintenance, and characteristics of isolates under laboratory conditions. Appl Environ Microbiol 59: 2150-2160.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 2150-2160
-
-
Schut, F.1
DeVries, E.J.2
Gottschal, J.C.3
Robertson, B.4
Harder, W.5
Prins, R.A.6
Button, D.K.7
-
45
-
-
0028868465
-
Mechanisms for the prevention of damage to DNA in spores of Bacillus species
-
Setlow P. 1995. Mechanisms for the prevention of damage to DNA in spores of Bacillus species. Annu Rev Microbiol 49: 29-54.
-
(1995)
Annu Rev Microbiol
, vol.49
, pp. 29-54
-
-
Setlow, P.1
-
46
-
-
0003855149
-
-
J Wiley & Sons, NY
-
Short Protocols in Molecular Biology. 2nd edn. 1992. (Ausubel FM, R Brent, RE Kingston, DD Moore, JG Sedman, JA Smith and K Struh, eds), pp 2.4-2.12, J Wiley & Sons, NY.
-
(1992)
Short Protocols in Molecular Biology. 2nd Edn.
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Sedman, J.G.5
Smith, J.A.6
Struh, K.7
-
47
-
-
0024842297
-
Distribution of aerobic bacteria, protozoa, algae, and fungi in deep subsurface sediments
-
Sinclair JL and WC Ghiorse. 1989. Distribution of aerobic bacteria, protozoa, algae, and fungi in deep subsurface sediments. Geomicrobiol J 7: 15-31.
-
(1989)
Geomicrobiol J
, vol.7
, pp. 15-31
-
-
Sinclair, J.L.1
Ghiorse, W.C.2
-
48
-
-
0028935920
-
Variability and density dependence of bacteria in terrestrial subsurface samples: Implication for enumeration
-
Stevens TO and BS Holbert. 1995. Variability and density dependence of bacteria in terrestrial subsurface samples: implication for enumeration. J Microbiol Meth 21: 283-292.
-
(1995)
J Microbiol Meth
, vol.21
, pp. 283-292
-
-
Stevens, T.O.1
Holbert, B.S.2
-
49
-
-
0028972702
-
Lithoautotrophic microbial ecosystems in deep basalt aquifer
-
Stevens TO and JP McKinley. 1995. Lithoautotrophic microbial ecosystems in deep basalt aquifer. Science 270: 450-454.
-
(1995)
Science
, vol.270
, pp. 450-454
-
-
Stevens, T.O.1
McKinley, J.P.2
-
50
-
-
0026680620
-
Effect of starvation on induction of quinoline degradation for a subsurface bacterium in a continuous-flow column
-
Truex MJ, FJ Brockman, DL Johnstone and JK Fredrickson. 1992. Effect of starvation on induction of quinoline degradation for a subsurface bacterium in a continuous-flow column. Appl Environ Microbiol 58: 2386-2392.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 2386-2392
-
-
Truex, M.J.1
Brockman, F.J.2
Johnstone, D.L.3
Fredrickson, J.K.4
-
51
-
-
0021786604
-
Determination of microbial cell numbers in subsurface samples
-
Webster JJ, GJ Hampton, JT Wilson, WC Ghiorse and FR Leach. 1985. Determination of microbial cell numbers in subsurface samples. Ground Water 23: 17-25.
-
(1985)
Ground Water
, vol.23
, pp. 17-25
-
-
Webster, J.J.1
Hampton, G.J.2
Wilson, J.T.3
Ghiorse, W.C.4
Leach, F.R.5
|