Action at a distance for negative control of transcription of the glpD gene encoding sn-glycerol 3-phosphate dehydrogenase of Escherichia coli K-12

Journal of Bacteriology

Volumn 178, Issue 24, 1996, Pages 7090-7098

  Yang, Bing ^a   Larson, Timothy J ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; GLYCEROL 3 PHOSPHATE DEHYDROGENASE; REGULATOR PROTEIN;

ARTICLE; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENE REPRESSION; NONHUMAN; OPERATOR GENE; PRIORITY JOURNAL; TRANSCRIPTION REGULATION;

ESCHERICHIA; ESCHERICHIA COLI; ESCHERICHIA COLI K12;

EID: 0030463126     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.24.7090-7098.1996     Document Type: Article

References (50)

1. Adhya, S. 1989. Multipartite genetic control elements: communication by DNA loop. Annu. Rev. Genet. 23:227-250.
2. Aki, T., H. E. Choy, and S. Adhya. 1996. Histone-like protein HU as a specific transcriptional regulator: co-factor role in repression of gal transcription by Gal repressor. Genes Cells 1:179-188.
3. Austin, D., and T. J. Larson. 1991. Nucleotide sequence of the glpD gene encoding aerobic sn-glycerol 3-phosphate dehydrogenase of Escherichia coli K-12. J. Bacteriol. 173:101-107.
4. Berlyn, M. K. B., K. B. Low, and K. E. Rudd. 1996. Linkage map of Escherichia coli K-12. edition 9, p. 1715-1902, In F. C. Neidhardt, R. Curtiss, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology. 2nd ed., vol. 2. American Society for Microbiology, Washington, D.C.
5. Casadaban, M. J. 1976. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bactcriophage lambda and Mu. J. Mol. Biol. 104:541-555.
6. Choy, H., and S. Adhya. 1996. Negative control, p. 1287-1299. In F. C. Neidhardt, R. Curtiss, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Rcznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. American Society for Microbiology, Washington, D.C.
7. Clark, D. J., and O. Maaløe. 1967. DNA replication and the division cycle in Escherichia coli. J. Mol. Biol. 23:99-112.
8. Cohen, S. N., and A. C. Y. Chang. 1973. Recircularization and autonomous replication of a sheared R-factor DNA segment in Escherichia coli transformants. Proc. Natl. Acad. Sci. USA 70:1293-1297.
9. Cole, S. T., K. Eiglmeier, S. Ahmed, N. Honore, L. Elmes, W. F. Andersen, and J. H. Weiner. 1988. Nucleotide sequence and gene-polypeptide relationships of the glpABC operon encoding the anaerobic sn-glycerol-3-phosphate dehydrogenase of Escherichia coli K-12. J. Bacteriol. 170:2448-2456.
10. Ehrmann, M., W. Boos, E. Ormseth, H. Schweizer, and T. J. Larson. 1987. Divergent transcription of the sn-glycerol-3-phosphate active transport (glpT) and anaerobic sn-glycerol-3-phosphate dehydrogenase (glpA glpC glpB) genes of Escherichia coli K-12. J. Bacteriol. 169:526-532.
11. Eiglmeier, K., W. Boos, and S. T. Cole. 1987. Nucleotide sequence and transcriptional startpoint of the glpT gene of Escherichia coli: extensive sequence homology of the glycerol-3-phosphate transport protein with components of the hexose-6-phosphate transport system. Mol. Microbiol. 1:251-258.
12. Freedberg, W. B., and E. C. C. Lin. 1973. Three kinds of controls affecting the expression of the glp regulon in Escherichia coli. J. Bacteriol. 115:816-823.
13. Friedman, D. I. 1988. Integration host factor: a protein for all reasons. Cell 55:545-554.
14. Goodrich, J. A., M. L. Schwartz, and W. R. McClure. 1990. Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res. 18:4993-5000.
15. Goosen, N., and P. van de Putte. 1995. The regulation of transcription initiation by integration host factor. Mol. Microbiol. 16:1-7.
16. Gralla, J. D., and J. Cullado-Vides. 1996. Organization and function of transcription regulators elements, p. 1232-1245. In F. C. Neidhardt. R. Curtiss, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter. and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. American Society for Microbiology, Washington, D.C.
17. Harrington, R. E. 1992. DNA curving and bending in protein-DNA recognition. Mol. Microbiol. 6:2549-2555.
18. Higuchi, R. 1990. Recombinant PCR, p. 177-183. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), PCR protocols. A guide to methods and applications. Academic Press, Inc., San Diego, Calif.
19. Iuchi, S., S. T. Cole, and E. C. C. Lin. 1990. Multiple regulatory elements for the glpA operon encoding anaerobic glycerol-3-phosphate dehydrogenase and the glpD operon encoding aerobic glycerol-3-phosphate dehydrogenase in Eschenchia coli. Further characterization of respiratory control. J. Bacteriol. 172:179-184.
20. Larson, T. J., J. S. Cantwell, and A. T. van Loo-Bhattacharya. 1992. Interaction at a distance between multiple operators controls the adjacent, divergently transcribed glpTQ-glpACB operons of Escherichia coli K-12. J. Biol. Chem. 267:6114-6121.
21. Larson, T. J., M. Ehrmann, and W. Boos. 1983. Periplasmic glycerophosphodiester phosphodiesterase of Escherichia coli. a new enzyme of the glp regulon. J. Biol. Chem. 258:5428-5432.
22. Larson, T. J., S. Ye, D. L. Weissenborn, H. J. Hoffmann, and H. Schweizer. 1987. Purification and characterization of the repressor for the glp regulon of Escherichia coli K-12. J. Biol. Chem. 262:15869-15874.
23. Lin, E, C. C. 1976. Glycerol dissimilation and its regulation in bacteria. Annu. Rev. Microbiol. 30:535-578.
24. Lin, E. C. C. 1996. Dissimilatory pathways for sugars, polyols, and carhoxylates, p. 307-342. In F. C. Neidhardt, R. Curtiss, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schacchter, and H. E. Umharger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. I. American Society for Microbiology, Washington, D.C.
25. Mendelson, I., M. Gottesman, and A. B. Oppenheim. 1991. HU and integration host factor function as auxiliary proteins in cleavage of phage lambda cohesive ends by terminase. J. Bacteriol. 173:16711-1676.
26. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
27. Müller, J., S. Oehler, and B. Müller-Hill. 1996. Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator. J. Mol. Biol. 257:21-29.
28. Nash, H. A. The HU and IMF proteins: accessory factors for complex protein-DNA assemblies, p. 149-179. in E. C. C. Lin and A. S. Lynch (ed.), Regulation of gene expression in Escherichia coli. Chapman & Hall, New York.
29. Oehler, S., E. R. Eismann, H. Krämer, and B. Müller-Hill. 1990. The three operators of the lac operon cooperate in repression. EMBO J. 9:973-979.
30. Pagel, J. M., and G. W. Hatfield. 1991. Integration host factor-mediated expression of the ilvGMEDA operon of Escherichia coli. J. Biol. Chem. 266:1985-1996.
31. Plunkett, G. 1995. GenBank accession no. U18997. Unpublished data.
32. Podkovyrov, S. M., and T. J. Larson. 1995. A new vector-host system for construction of lacZ transcriptional fusions where only low-level gene expression is desirable. Gene 156:151-152.
33. Raetz, C. R. H., and W. Dowhan. 1990. Biosynthesis and function of phospholipids in Escherichia coli. J. Biol. Chem. 265:1235-1238.
34. Rose, R. E. 1988. The nucleotidc sequence of pACYC177. Nucleic Acids Res. 16:356.
35. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
36. Schweizer, H., W. Boos, and T. J. Larson. 1985. Repressor for the sn-glycerol-3-phosphate regulon of Escherichia coli K-12: cloning of the glpR gene and identification of its product. J. Bacteriol. 161:563-566.
37. Schweizer, H., and T. J. Larson. 1987. Cloning and characterization of the aerobic sn-glycerol-3-phosphale dehydrogenase structural gene glpD of Escherichia coli K-12. J. Bacteriol. 169:507-513.
38. Schweizer, H., G. Sweet, and T. J. Larson. 1986. Physical and genetic structure of the glpD-malT interval of the Escherichia coli K-12 chromosome. Identification of two new structural genes of the glp regulon. Mol. Gen. Genet. 202:488-492.
39. Silhavy, T. J., M. L. Berman, and L. W. Enquist. 1984. Experiments with gene fusions. Cold Spring Harbor Laboratory, Cold Spring Harbor, N. Y.
40. Simons, R. W., F. Houman, and N. Kleckner. 1987. Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene 53:85-96.
41. Spicer, P. O., K. O'Brien, and S. Malov. 1991. Regulation of proline utilization in Sulmonella typhimurium: a membrane-associated dehydrogenase hinds DNA in vitro. J. Bacteriol. 173:211-219.
42. Sweet, G., C. Gandor. R. Voegele, N. Wittekindt, J. Beuerle, V. Truniger, E. C. C. Lin, and W. Boos. 1990. Glycerol facilitator of Escherichia coli: cloning of glpf and identification of the glpF product. J. Bacteriol. 172:424-430.
43. Tao, B. Y., and K. C. P. Lee. 1994. Mutagenesis by PCR, p. 69-83. In H. G. Griffin and A. M. Griffin (ed.), PCR technology. Current innovations. CRC Press, Inc., Boca Raton, Fla.
44. Tommassen, J., K. Eiglmeier, S. T. Cole, P. Overduin, T. J. Larson, and W. Boos. 1991. Characterization of two genes, glpQ and ugpQ, encoding glyccrophosphoryl dicster phosphodiesterases of Escherichia coli. Mol. Gen. Genet. 226:321-327.
45. Truniger, V., W. Boos, and G. Sweet. 1992. Molecular analysis of the glpFKX regions of Escherichia coli and Shigella flexneri. J. Bacteriol. 174:6981-6991.
46. Weissenborn, D. L., N. Wittekindt, and T. J. Larson. 1992. Structure and regulation of the glpFK operon encoding glycerol diffusion facilitator and glycerol kinase of Escherichia coli K-12. J. Biol. Chem. 267:6122-6131.
47. Yang, B., S. G. Gerhardt, and T. J. Larson. Unpublished data.
48. Ye, S., and T. J. Larson. 1988. Structures of the promoter and operator of the glpD gene encoding aerobic sn-glycerol-3-phosphate dehydrogenase of Escherichia coli K-12. J. Bacteriol. 170:4209-4215.
49. Zeng, G., S. Ye, and T. J. Larson. 1996. Repressor for the sn-glycerol 3-phosphale regulon of Escherichia coli K-12: primary structure and identification of the DNA-binding domain. J. Baclcriol. 178:7080-7089.
50. Zhao, N., W. Oh, D. Trybul, K. S. Thrasher, T. J. Kingsbury, and T. J. Larson. 1994. Characterization of the interaction of the glp repressor of Escherichia coli K-12 with single and tandem glp operator variants. J. Bacteriol. 176:2393-2397.