Highly conserved structure in the promoter region of the gene for muscle-specific calpain, p94

Biological Chemistry

Volumn 377, Issue 12, 1996, Pages 859-864

  Sorimachi, Hiroyuki ^a   Forsberg, Neil E ^b   Lee, Hahn Jun ^a   Joeng, Seon Yong ^a   Richard, Isabelle ^c   Beckmann, Jacques S ^c   Ishiura, Shoichi ^a   Suzuki, Koichi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b OREGON STATE UNIVERSITY   (United States)

^c GÉNÉTHON   (France)

Author keywords

Calcium; Calpain; Cysteine protease; Genome; Muscular dystrophly; Promoter region; Skeletal muscle

Indexed keywords

CALPAIN; MESSENGER RNA; MUSCLE PROTEIN; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; AUTOLYSIS; BINDING SITE; EXON; GENE TARGETING; HALF LIFE TIME; HUMAN; HUMAN CELL; INTRON; MOLECULAR CLONING; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; PROTEIN EXPRESSION; RAT; SEQUENCE HOMOLOGY; SKELETAL MUSCLE; TISSUE SPECIFICITY;

EID: 0030457815     PISSN: 14316730     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (52)

1. Autieri, M.V., Vue, T.L., Ferstein, G.Z., and Ohlstein, E. (1995). Antisense oligonucleotides to the p65 subunit of NF-κB inhibit human vascular smooth muscle cell adherence and proliferation and prevent neointima formation in rat carotid arteries. Biochem. Biophys. Res. Commun. 213, 827-836.
2. Banville, D., Rotaru, M., and Boie, Y. (1992). The intracisternal A particle derived solo LTR promoter of the rat oncornodulin gene is not present in the mouse gene. Genetica 86, 85-97.
3. Ben Aziz-Aloya, R., Seidman, S., Timberg, R., Sternfeld, M., Zakut, H., and Soreq, H. (1993). Expression of a human acetylcholinesterase promoter-reporter construct in developing neuromuscular junctions of Xenopus embryos. Proc. Natl. Acad. Sci. USA 90, 2471-2475.
4. Breathnach, R., and Chambon, P. (1981). Organization and expression of eucaryotic split genes coding for proteins. Ann. Rev. Biochem. 50, 349-383.
5. Campbell, K.P. (1995). Three muscular dystrophies: loss of cytoskeleton-extracellular matrix linkage. Cell 80, 675-679.
6. Campbell, S.M., Rosen, J.M., Hennighausen, L.G., Strech-Jurk, U., and Sippel, A.E. (1984). Comparison of the whey acidic protein genes of the rat and mouse. Nucl. Acid Res. 12, 8685-8697.
7. Carcamo, J., Maldonado, E., Cortes, P., Ahn, M.-H., Ha, I., Kasai, Y., Flint, J., and Reinberg, D. (1990). A TATA-like sequence located downstream of the transcription initiation site is required for expression of an RNA polymerase II transcribed gene. Genes Dev. 4, 1611-1622.
8. DeLuca, C.I., Davies, P.L., Samis, J.A., and Elce, J.S. (1993). Molecular cloning and bacterial expression of cDNA for rat calpain II 80 kDa subunit. Biochim. Biophis. Acta 1216, 81-93.
9. Denison, S.H., Orejas, M. and Arst, H.N. (1995). Signaling of ambient pH in Aspergillus involves a cysteine protease. J. Biol. Chem. 270, 28519-28522.
10. Dunn, T.L., Mynett-Johnson, L., Wright, E.M., Hosking, B.M., Koopman, P.A., and Muscat, G.E. (1995). Sequence and expression of Sox-18 encoding a new HMG-box transcription factor. Gene 161, 223-225.
11. Emori, Y., Kawasaki, H., Imajoh, S., Kawashima, S., and Suzuki, K. (1986a). Isolation and sequence analyses of cDNA clones for the large subunits of two isozymes of rabbit calcium-dependent protease. J. Biol. Chem. 261, 9472-9476.
12. Emori, Y., Kawasaki, H., Sugihara, H., Imajoh, S., Kawashima, S., and Suzuki, K. (1986b). Isolation and sequence analysis of cDNA clones for the small subunit of rabbit calcium-dependent protease. J. Biol. Chem. 261, 9465-9471.
13. Furst, D.O., Osborn, M., and Weber, K. (1989). Myogenesis in the mouse embryo: differential onset of expression of myogenic proteins and the involvement of titin in myofibril assembly. J. Cell Biol. 109, 517-527.
14. Graw, J., Liebstein, A., Pietrowski, D., Schmitt-John, T., and Werner, T. (1993). Genomic sequences of murine gamma B-and gamma C-crystallin-encoding genes: promoter analysis and complete evolutionary pattern of mouse, rat and human gamma-crystallins. Gene 136, 145-156.
15. Gubbay, J., Collignon, J., Koopman, P., Capel, B., Economou, A., Munsterberg, A., Vivian, N., Goodfellow, R, and Lovell-Badge, R. (1990). A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes. Nature 346, 245-250.
16. Hata, A., Ohno, S., Akita, Y., and Suzuki, K. (1989). Tandemly reiterated negative enhancer-like elements regulate transcription of a human gene for the large subunit of calcium-dependent protease. J. Biol. Chem. 264, 6404-6411.
17. Huang, J., Blackwell, T.K., Kedes, L., and Weintraub, H. (1996). Differences between MyoD DNA binding and activation site requirements revealed by functional random sequence selection. Mol. Cell. Biol. 16, 3893-3900.
18. Klamut, H.J., Gangopadhyay, S.B., Worton, R.G., and Ray, P.N. (1990). Molecular and functional analysis of the muscle-specific promoter region of the Duchenne muscular dystrophy gene. Mol. Cell. Biol. 10, 193-205.
19. Labeit, S., and Kolmerer, B. (1995). Titins: giant proteins in charge of muscle ultrastructure and elasticity. Science 270, 293-296.
20. Lagercrantz, U., Ellegren, H., and Andersson, L. (1993). The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucl. Acids Res. 21, 1111-1115.
21. Mar, J.H., and Ordahl, C.P. (1988). A conserved CATTCCT motif is required for skeletal muscle-specific activity of the cardiac troponin T gene promoter. Proc. Natl. Acad. Sci. USA 85, 6404-6408.
22. Martin, J.F., Schwarz, J.J., and Olson, E.N. (1993). Myocyte enhancer factor (MEF) 2C: a tissue-restricted member of the MEF-2 family of transcription factors. Proc. Natl. Acad. Sci. USA 90, 5282-5286.
23. Maruyama, K. (1994). Connectin, an elastic protein of striated muscle. Biophys. Chem. 50, 73-85.
24. Mellgren, R.L., and Murachi, T. (1990). Structural and regulatory properties of the calpains and calpastatin. In: Intracellular Calcium-dependent Proteolysis. (Boston, USA: CRC Press).
25. Miyake, S., Emori, Y., and Suzuki, K. (1986). Gene organization of the small subunit of human calcium-activated neutral protease. Nucl. Acids Res. 14, 8805-8817.
26. Molkentin, J.D., Kalvakolanu, D.V., and Markham, B.E. (1994). Transcription factor GATA-4 regulates cardiac muscle-specific expression of the alpha-myosin heavy-chain gene. Mol. Cell. Biol. 14, 4947-4957.
27. Mori, Y., Folco, E., and Koren, G. (1995). GH3 cell-specific expression of Kv1.5 gene. Regulation by a silencer containing a dinucleotide repetitive element. J. Biol. Chem. 270, 27788-27796.
28. Mount, S.M. (1982). A catalogue of splice junction sequences. Nucl. Acids Res. 10, 459-472.
29. Nyunoya, H., Morita, T., Sato, T., Honma, S., Tsujimoto, A., and Shimotohno, K. (1993). Cloning of a cDNA encoding a DNA-binding protein TAXREB302 that is specific for the tax-responsive enhancer of HTLV-1. Gene 126, 251-255.
30. Perisic, O., Xiao, H., and Lis, J.T. (1989). Stable binding of Drosophila heat shock factor to head-to-head and tail-to-tail repeats of a conserved 5 bp recognition unit. Cell 59, 797-806.
31. Pugh, B.F., and Tjian, R. (1992). Diversetranscriptional functions of the multisubunit eukaryotic TFIID complex. J. Biol. Chem. 267, 679-682.
32. Rabindran, S.K., Giorgi, G., Clos, J., and Wu, C. (1991). Molecular cloning and expression of a human heat shock factor, HSF1. Proc. Natl. Acad. Sci. USA 88, 6906-6910.
33. Richard, I., Broux, O., Allemand, V, Fougerousse, F., Chiannilkulchai, N., Bourg, N., Brenguier, L., Devaud, C., Pasturaud, P., Roudaut, C., Hillaire, D., Passos-Bueno, M.-R., Zatz, M., Tischfield, J.A., Fardeau, M., Jackson, C.E., Cohen, D., and Beckmann, J.S. (1995). Mutations in the proteolytic enzyme calpain 3 cause limb-girdle muscular dystrophy type 2A. Cell 81, 27-40.
34. Richard, I., and Beckmann, J.S. (1996). Molecular cloning of mouse canp3, the gene associated with limb-girdle muscular dystrophy 2A in human. Mammalian Genome 7, 377-379.
35. Ruben, S.M., Dillon, P.J., Schreck, R., Henkel, T., Chen, C.H., Maher, M., Baeuerle, P.A., and Rosen, C.A. (1991). Isolation of a rel-related human cDNA that potentially encodes the 65-kD subunit of NF-κB Science 251, 1490-1493.
36. Saido, T.C., Sorimachi, H., and Suzuki, K. (1994). Calpain: new perspectives in molecular diversity and physiological-pathological involvement. FASEB. J. 8, 814-822.
37. Sarge, K.D., Zimarino, V., Holm, K., Wu, C., and Morimoto, R.I. (1991). Cloning and characterization of two mouse heat shock factors with distinct inducible and constitutive DNA-binding ability. Genes Dev. 5, 1902-1911.
38. Sharrocks, A.D., von Hesler, F., and Shaw, P.E. (1993). The identification of elements determining the different DNA binding specificities of the MADS box proteins p67SRF and RSRFC4. Nucleic Acid Res. 21, 215-221.
39. Singer, V.L., Wobbe, C.R., and Struhl, K. (1990). A wide variety of DNA sequences can functionally replace a yeast TATA element for transcriptional activation. Genes Dev. 4, 636-645.
40. Sorimachi, H., Imajoh-Ohmi S., Emori, Y., Kawasaki, H., Ohno, S., Minami, Y., and Suzuki, K. (1989). Molecular cloning of a novel mammalian calcium-dependent protease distinct from both m- and μ-types. J. Biol. Chem. 264, 20106-20111.
41. Sorimachi, H., Toyama-Sorimachi, N., Saido, T.C., Kawasaki, H., Sugita, H., Miyasaka, M., Arahata, K., Ishiura, S., and Suzuki, K. (1993a). Muscle-specific calpain, p94, is degraded by autolysis immediately after translation, resulting in disappearance from muscle. J. Biol. Chem. 268, 10593-10605.
42. 2+-binding domain. J. Biol. Chem. 268, 19476-19482.
43. Sorimachi, H., Saido, T.C., and Suzuki, K. (1994). New era of calpain research: Discovery of tissue-specific calpains. FEBS Lett. 343, 1-5.
44. Sorimachi, H., Kinbara, K., Kimura, S., Takahashi, M., Ishiura, S., Sasagawa, N., Sorimachi, N., Shimada, H., Tagawa, K., Maruyama, K., and Suzuki, K. (1995a). Muscle-specific calpain, p94, responsible for limb girdle muscular dystrophy type 2A, associates with connectin through IS2, a p94-specific sequence. J. Biol. Chem. 270, 31158-31162.
45. Sorimachi, H., Tsukahara, T., Okada-Ban, M., Sugita, H., Ishiura, S., and Suzuki, K. (1995b). Identification of a third ubiquitous calpain species. - Chicken muscle expresses four distinct calpains. Biochim. Biophys. Acta 1261, 381-393.
46. Sorimachi, H., Kimura, S., Kinbara, K., Kazama, J., Takahashi, M., Yajima, H., Ishiura, S., Sasagawa, N., Nonaka, I., Sugita, H., Maruyama, K., and Suzuki, K. (1996). Structure and physiological functions of ubiquitous and tissue-specific calpain species muscle-specific calpain, p94, interacts with connectin/titin. Adv. Biophys. 33, 101-122.
47. Suzuki, K., Sorimachi, H., Yoshizawa, T., Kinbara, K., and Ishiura, S. (1995). Calpain: novel family members, activation, and physiologic function. Biol. Chem. Hoppe-Seyler 376, 523-529.
48. Trinick, J. (1994). Titin and nebulin: protein rulers in muscle? Trends Biochem. Sci. 19, 405-409.
49. Tsai, S.F., Martin, D.I., Zon, L.I., D'Andrea, A.D., Wong, G.G., and Orkin, S.H. (1989). Cloning cDNA for the major DNA-binding protein of the erythroid lineage through expression in mammalian cells. Nature 339, 446-451.
50. Weintraub, H., Genetta, T., and Kadesch, T. (1994). Tissue-specific gene activation by MyoD: determination of specificity by cis-acting repression elements. Genes Dev. 8, 2203-2211.
51. Wen, L., Huang, J.-K., and Blackshear, P.J. (1989). Rat ornithine decarboxylase gene. Nucleotide sequence, potential regulatory elements, and comparison to the mouse gene. J. Biol. Chem. 264, 9016-9021.
52. Xiao, H., Perisic, O., and Lis, J.T. (1991). Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit. Cell 64, 585-593.