Genomic distribution of 5' TTCCA 3' repeat motif and its diagnostic potential in human Y-chromosome-related anomalies

Clinical Genetics

Volumn 50, Issue 5, 1996, Pages 358-365

  Gauri, ^a   Bala, Shashi ^a   Ahmad, Jamal ^b   Ali, Sher ^a  

^a NATIONAL INSTITUTE OF IMMUNOLOGY   (India)

^b ALIGARH MUSLIM UNIVERSITY   (India)

Author keywords

Human genome; In situ hybridization; Repeat sequences; Y chromosome

Indexed keywords

REPETITIVE DNA; SYNTHETIC DNA;

ADOLESCENT; ADULT; AGED; ARTICLE; CELL POPULATION; CHILD; CONTROLLED STUDY; DIAGNOSTIC VALUE; DNA PROBE; FEMALE; GENETIC MARKER; GONADOBLASTOMA; HIGH RISK POPULATION; HUMAN; HUMAN CELL; IN SITU HYBRIDIZATION; MALE; PRESCHOOL CHILD; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SCHOOL CHILD; TURNER SYNDROME; Y CHROMOSOME; Y CHROMOSOME LINKED DISORDER;

EID: 0030451727     PISSN: 00099163     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0004.1996.tb02388.x     Document Type: Article

References (38)

1. Ali S, Mueller CR, Epplen JT. DNA fingerprinting by oligonucleotide probes specific for simple repeats. Hum Genet 1986: 74: 1245-1249.
2. Ali S, Wallace RB. Intrinsic polymorphism of variable number tandem repeat loci in the human genome. Nucl Acids Res 1988: 16: 8487-8496.
3. Ali S, Epplen JT. DNA fingerprinting of the eukaryotic genomes by synthetic oligodeoxynucleotide probes. Ind J Biochem Biophys 1991: 29: 1-9.
4. Ali S, Gauri, Bala S. A synthetic oligonucleotide probe 5' TTCCA 3' uncovers male specific hybridization pattern in the human genome. Mol Cell Probes 1992: 6: 521-525.
5. Blackburn EH, Szostak JW. The molecular structure of centromeres and telomeres. Ann Rev Biochem 1984: 53: 163-194.
6. Brown WRA, Mackinnon PJ, Villasante A, Spurr N, Buckle VJ, Dobson MJ. Structure and polymorphism of human telomere associated DNA. Cell 1990: 63: 119-132.
7. Buckle VJ, Edwards JH, Evans EP, Jonasson JA, Lyon MF, Peters J, Searle AG, Wedd NS. Chromosome maps of man and mouse II. Clin Genet 1984: 26: 1-11.
8. Cooke H. Repeated sequences specific to human males. Nature 1976: 262: 182-186.
9. Cooke HJ, McKay RDG. Evolution of a human Y chromosome specific repeated sequence. Cell 1978: 13: 453-460,
10. Cooke HJ, Hindley J. Cloning of human satellite III DNA: different components are on different chromosomes. Nucl Acids Res 1979: 6: 3177-3197,
11. Cooke HJ, Schmidtke J, Gosden IR. Characterization of a human Y chromosome repeated sequence and related sequences in higher primates. Chromosoma 1982: 87: 491-502,
12. De Lange, T Shuie L, Myers RM, Cox DR, Naylor SL, Killary AM, Varmus HE. Structure and variability of human chromosome ends. Mol Cell Biol 1990: 10: 518-527.
13. Jeffreys AJ, Wilson V, Thein SL. Hypervariable 'minisatellite' regions in human DNA. Nature 1985: 314: 67-73.
14. Kobayashi R, Nakauchi H, Nakahori Y, Nakagome Y, Matsuzawa S. Sex identification in fresh blood and dried blood stains by a non-isotopic deoxyribonucleic acid DNA analyzing technique. J Forensic Sci 1988: 33: 613-620.
15. Kogan SC, Doheny M, Gitschier J. An improved method for prenatal diagnosis of genetic diseases by analysis of amplified DNA sequences. Application to hemophilia A. New Engl J Med 1987: 317: 985-990.
16. Kunkel LM, Smith KD, Boyer SH, Borgaonkar DS. Wachtel SS, Miller OJ, Breg WR, Jones Jr HW, Rary JM. Analysis of human Y chromosome specific reiterated DNA in chromosome variants. Proc Natl Acad Sci USA 1977: 74: 1245-1249.
17. Lau YF. Detection of Y specific repeat sequences in normal and variant human chromosomes using in-situ hybridization with biotinylated probe. Cytogenet Cell Genet 1985: 39: 184-187.
18. Manueal M, Katayama KP, Jones HW. The age of occurrence of the gonadal tumours in intersex patients with a Y chromosome. Am J Obstet Gynaecol 1976: 124: 293-300.
19. Mitani K, Takahashi Y, Kominami R. A GGCAGG motif in minisatellites affecting their germline instability. J Biol Chem 1990: 265: 15203-15210.
20. Morton NE. Parameters of the human genome. Proc Natl Acad Sci USA 1991: 88: 7474-7476.
21. Nagafuchi S, Tamura T, Nakahori Y, Takano K, Nishi Y, Iwatani N, Kitao M, Hori Y, Konda S, Hasegawa T, Numabe H, Fujieda K, Tanaka T, Hibi I, Nakagome Y. The majority of the marker chromosomes in Japanese patients with stigmata of turner syndrome are derived from Y chromosome. Hum Genet 1992: 89: 590-592.
22. Nakagome Y, Nagatuchi S, Seki S, Nakahori Y, Tamura T, Yamuda M, Iwaya M. A repeating unit of DYZ1 family on the human Y chromosome consists of segments with partial male-specificity. Cytogenet Cell Genet 1991: 56: 74-77.
23. Nakahori Y, Mitani K, Yamada M, Nakagome Y. A human Y chromosome specific repeated DNA family DYZl consists of a tandem array of pentanucleotides Nucl Acids Res 1986: 14: 7569-7580.
24. Nakamura YM, Lathrop MM, O'Connell P, Leppert M, Barker D, Wright E, Skolnick M, Kondoleon S, Litt M, Lalouel JM. A map set of DNA markers for human chromosome 17, Genomics 1988: 2: 302-309,
25. Page DC. Hypothesis: a Y chromosomal gene causes gonadoblastoma in dysgenetic gonads Develop 1987: 101 Suppl: 151-155.
26. Schellhas HF. Malignant potential of the dysgenetic gonad. Obstet Gynaecol 1974: 44: 455-462.
27. Schimke RT. Gene amplification in cultured animal cells. Cell 1984: 37: 705-713.
28. Scully RE. Neoplasia associated with abnormal sexual development and abnormal sex chromosomes. Paediatr Adolesc Endocr 1981: 8: 203-217.
29. Singh L, Jones KW. The use of heparin as a simple cost-effective means of controlling background in nucleic acid hybridization procedures Nucl Acids Res 1984: 12: 5627-5638.
30. Smith GP. Evolution of repeated DNA sequences unequal crossover. Science 1976: 191: 528-534.
31. Southern EM. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 1975: 98: 503-517.
32. Stark GR, Wahl GM. Gene amplification. Ann Rev Biochem 1984: 53: 447-491.
33. Strand M, Prolla TA, Liskay RM, Petes TD. Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting mismatch repair, Nature 1993: 365: 274-276.
34. Sumner AT. A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res 1972: 75: 304-306.
35. Tyrkus M, McCorquodale M, Postellon D, Franco-Sanez R. Atypical gonadal dysgenesis: the role of Yq in determining phenotype and malignancy risk. Clin Genet 1984: 25: 259-266.
36. Witt M, Erickson RP. A rapid method for detection of Y-chromosomal DNA from dried blood specimens by the polymerase chain reaction. Hum Genet 1989: 82: 271-274.
37. Witt M, Michalczak K, Latos-Bielenska A, Joruzelska J, Kuczora I, Lopez M. An improved non-isotopic method of screening cells from patients with abnormalities of sexual differentiation for Y chromosomal DNA. J Med Genet 1993: 30: 304-307.
38. Yam P. Petz LD, Ali S, Stock AD, Wallace RB. Development of a single probe for documentation of chimerism following bone marrow transplantation. Am J Hum Genet 1987: 41: 867-881.