메뉴 건너뛰기




Volumn 25, Issue 2, 1996, Pages 115-130

Algorithm independent properties of RNA secondary structure predictions

Author keywords

Kinetic folding; Minimum free energy structures; RNA secondary structures; Sequence structure relations

Indexed keywords

RNA;

EID: 0030444757     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002490050023     Document Type: Article
Times cited : (76)

References (94)
  • 1
    • 0025315854 scopus 로고
    • Prediction of RNA secondary structure, including pseudoknotting, by computer simulation
    • Abrahams JP, van den Berg M, van Batenburg E, Pleij C (1990) Prediction of RNA secondary structure, including pseudoknotting, by computer simulation. Nucl Acids Res 18: 3035-3044
    • (1990) Nucl Acids Res , vol.18 , pp. 3035-3044
    • Abrahams, J.P.1    Van Den Berg, M.2    Van Batenburg, E.3    Pleij, C.4
  • 2
    • 0027488624 scopus 로고
    • Isolation of ribozymes from a large pool of random sequences
    • Bartel DP, Szostak JW (1993) Isolation of ribozymes from a large pool of random sequences. Science 261: 1411-1418
    • (1993) Science , vol.261 , pp. 1411-1418
    • Bartel, D.P.1    Szostak, J.W.2
  • 3
    • 0026649231 scopus 로고
    • Direct evolution of an RNA enzyme
    • Beaudry AA, Joyce GF (1992) Direct evolution of an RNA enzyme. Science 257: 635-641
    • (1992) Science , vol.257 , pp. 635-641
    • Beaudry, A.A.1    Joyce, G.F.2
  • 7
    • 0024214064 scopus 로고
    • Conserved sequences and structures of group I introns: Building an active site for RNA catalysis - A review
    • Cech TR (1988) Conserved sequences and structures of group I introns: building an active site for RNA catalysis - a review. Gene 73: 259-271
    • (1988) Gene , vol.73 , pp. 259-271
    • Cech, T.R.1
  • 9
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-824
    • (1990) Nature , vol.346 , pp. 818-824
    • Ellington, A.D.1    Szostak, J.W.2
  • 10
    • 0015526994 scopus 로고
    • Free energy of imperfect nucleic acid helices I. The bulge defect
    • Fink TR, Crothers DM (1972) Free energy of imperfect nucleic acid helices I. The bulge defect. J Mol Biol 66: 1-12
    • (1972) J Mol Biol , vol.66 , pp. 1-12
    • Fink, T.R.1    Crothers, D.M.2
  • 11
    • 0000647969 scopus 로고
    • Statistics of landscapes based on free energies, replication and degradation rate constants of RNA secondary structures
    • Fontana W, Griesmacher T, Schnabl W, Stadler PF, Schuster P (1991) Statistics of landscapes based on free energies, replication and degradation rate constants of RNA secondary structures. Mh Chem 122: 795-819
    • (1991) Mh Chem , vol.122 , pp. 795-819
    • Fontana, W.1    Griesmacher, T.2    Schnabl, W.3    Stadler, P.F.4    Schuster, P.5
  • 15
    • 0003604405 scopus 로고
    • Cold Spring Harbor Laboratory Press, Plainview, NY
    • Gesteland RF, Atkins JF, eds. (1993) The RNA world. Cold Spring Harbor Laboratory Press, Plainview, NY
    • (1993) The RNA World
    • Gesteland, R.F.1    Atkins, J.F.2
  • 17
    • 0015914592 scopus 로고
    • Free energy of imperfect nucleic acid helices II. Small hairpin loops
    • Gralla J, Crothers DM (1973a) Free energy of imperfect nucleic acid helices II. Small hairpin loops. J Mol Biol 73: 497-517
    • (1973) J Mol Biol , vol.73 , pp. 497-517
    • Gralla, J.1    Crothers, D.M.2
  • 18
    • 0015800196 scopus 로고
    • Free energy of imperfect nuclei acid helices III. Small internal loops
    • Gralla J, Crothers DM (1973b) Free energy of imperfect nuclei acid helices III. Small internal loops. J Mol Biol 78: 301-139
    • (1973) J Mol Biol , vol.78 , pp. 301-1139
    • Gralla, J.1    Crothers, D.M.2
  • 20
    • 0039577307 scopus 로고    scopus 로고
    • Analysis of RNA sequence structure maps by exhaustive enumeration. Part II: Structures of neutral networks and shape space covering
    • Grüner W, Giegerich R, Strothmann D, Reidys C, Weber J, Hofacker IL, Stadler PF, Schuster P (1996b) Analysis of RNA sequence structure maps by exhaustive enumeration. Part II: Structures of neutral networks and shape space covering. Mh Chem 127: 375-389
    • (1996) Mh Chem , vol.127 , pp. 375-389
    • Grüner, W.1    Giegerich, R.2    Strothmann, D.3    Reidys, C.4    Weber, J.5    Hofacker, I.L.6    Stadler, P.F.7    Schuster, P.8
  • 21
    • 0025878210 scopus 로고
    • The computer simulation of RNA folding involving pseudoknot formation
    • Gultyaev AP (1991) The computer simulation of RNA folding involving pseudoknot formation. Nucl Acids Res 19: 2489-2494
    • (1991) Nucl Acids Res , vol.19 , pp. 2489-2494
    • Gultyaev, A.P.1
  • 22
    • 0002542661 scopus 로고
    • Evolutionary characteristics of 16S and 23S rRNA structures
    • Hartman H, Matsuno K (eds) World Scientific, Singapore
    • Gutell RR (1992) Evolutionary characteristics of 16S and 23S rRNA structures. In: Hartman H, Matsuno K (eds) The origin and evolution of the cell. World Scientific, Singapore, pp 243-310
    • (1992) The Origin and Evolution of the Cell , pp. 243-310
    • Gutell, R.R.1
  • 23
    • 0027236838 scopus 로고
    • Comparative studies of RNA: Inferring higher-order structure from patterns of sequence variation
    • Guteli RR (1993) Comparative studies of RNA: inferring higher-order structure from patterns of sequence variation. Curr Opin Struct Biol 3: 312-322
    • (1993) Curr Opin Struct Biol , vol.3 , pp. 312-322
    • Guteli, R.R.1
  • 24
    • 0002304830 scopus 로고
    • RNA secondary structure: A comparison of real and random sequences
    • Higgs PG (1993) RNA secondary structure: a comparison of real and random sequences. J Phys I France 3: 43-59
    • (1993) J Phys I France , vol.3 , pp. 43-59
    • Higgs, P.G.1
  • 25
    • 0000113876 scopus 로고    scopus 로고
    • Overlaps between RNA secondary structures
    • Higgs PG (1996) Overlaps between RNA secondary structures. Phys Rev Lett 76: 704-707
    • (1996) Phys Rev Lett , vol.76 , pp. 704-707
    • Higgs, P.G.1
  • 28
    • 0021759975 scopus 로고
    • Energy directed folding of RNA sequences
    • Hogeweg P, Hesper B (1984) Energy directed folding of RNA sequences. Nucl Acids Res 12: 67-74
    • (1984) Nucl Acids Res , vol.12 , pp. 67-74
    • Hogeweg, P.1    Hesper, B.2
  • 30
    • 0030030533 scopus 로고    scopus 로고
    • Smoothness within ruggedness: The role of neutrality in adaptation
    • Huynen MA, Stadler PF, Fontana W (1996b) Smoothness within ruggedness: The role of neutrality in adaptation. Proc Natl Acad Sci USA 93: 397-401
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 397-401
    • Huynen, M.A.1    Stadler, P.F.2    Fontana, W.3
  • 31
    • 0345005029 scopus 로고
    • Improved predictions of secondary structures for RNA
    • Jaeger JA, Turner DH, Zuker M (1989) Improved predictions of secondary structures for RNA. Biochemistry 86: 7706-7710
    • (1989) Biochemistry , vol.86 , pp. 7706-7710
    • Jaeger, J.A.1    Turner, D.H.2    Zuker, M.3
  • 32
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison RD, Gill SC, Pardi A, Polisky B (1994) High-resolution molecular discrimination by RNA. Science 263: 1425-1429
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 33
    • 0024443885 scopus 로고
    • Amplification, mutation, and selection of catalytic RNA
    • Joyce GF (1989) Amplification, mutation, and selection of catalytic RNA. Gene 82: 83-87
    • (1989) Gene , vol.82 , pp. 83-87
    • Joyce, G.F.1
  • 35
    • 0024395268 scopus 로고
    • Pattern analysis of RNA secondary structure. Similarity and consensus of minimal energy folding
    • Konings DAM, Hogeweg P (1989) Pattern analysis of RNA secondary structure. Similarity and consensus of minimal energy folding. J Mol Biol 207: 597-614
    • (1989) J Mol Biol , vol.207 , pp. 597-614
    • Konings, D.A.M.1    Hogeweg, P.2
  • 36
    • 0029348884 scopus 로고
    • A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs
    • Konings DAM, Gutell RR (1995) A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs. RNA 1: 559-574
    • (1995) RNA , vol.1 , pp. 559-574
    • Konings, D.A.M.1    Gutell, R.R.2
  • 37
    • 0024381773 scopus 로고
    • A method for assessing the statistical significance of RNA Folding
    • Le SY, Maizel Jr JV (1989) A method for assessing the statistical significance of RNA Folding. J Theor Biol 138: 495-510
    • (1989) J Theor Biol , vol.138 , pp. 495-510
    • Le, S.Y.1    Maizel Jr., J.V.2
  • 38
    • 0025647888 scopus 로고
    • Common structures of the 5′ non-coding RNA in eneteroviruses and rhinoviruses. Thermodynamical stability and statistical significance
    • Le SY, Zuker M (1990) Common structures of the 5′ non-coding RNA in eneteroviruses and rhinoviruses. Thermodynamical stability and statistical significance. J Mol Biol 216: 729-741
    • (1990) J Mol Biol , vol.216 , pp. 729-741
    • Le, S.Y.1    Zuker, M.2
  • 39
    • 0021101280 scopus 로고
    • Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli
    • Maly P, Brimacombe R (1983) Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli. Nucl Acids Res 11: 7363-7386
    • (1983) Nucl Acids Res , vol.11 , pp. 7363-7386
    • Maly, P.1    Brimacombe, R.2
  • 40
    • 0021760032 scopus 로고
    • An RNA folding rule
    • Martinez HM (1984) An RNA folding rule. Nucl Acids Res 12: 323-334
    • (1984) Nucl Acids Res , vol.12 , pp. 323-334
    • Martinez, H.M.1
  • 41
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - A review
    • Michel F, Umesono K, Ozeki H (1989) Comparative and functional anatomy of group II catalytic introns - a review. Gene 82: 5-30
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 42
    • 0025678737 scopus 로고
    • Modelling the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F, Westhof E (1990) Modelling the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 214: 585-610
    • (1990) J Mol Biol , vol.214 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 43
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structures
    • McCaskill JS (1990) The equilibrium partition function and base pair binding probabilities for RNA secondary structures. Biopolymers 29: 1105-1119
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 44
    • 84957795647 scopus 로고
    • Thermodynamics of RNA folding. When is an RNA molecule in equilibrium?
    • Morán F, Moreno A, Merelo JJ, Chacón P (eds) Advances in artificial life. Springer, Berlin Heidelberg New York
    • Morgan SR, Higgs PG (1995) Thermodynamics of RNA folding. When is an RNA molecule in equilibrium? In: Morán F, Moreno A, Merelo JJ, Chacón P (eds) Advances in artificial life. Lecture notes in artificial intelligence, Proc vol 929. Springer, Berlin Heidelberg New York, pp 852-861
    • (1995) Lecture Notes in Artificial Intelligence , vol.929 PROC , pp. 852-861
    • Morgan, S.R.1    Higgs, P.G.2
  • 45
    • 0018605413 scopus 로고
    • Prediction of pairing schemes in RNA molecules. Loop contributions and energy of wobble and non-wobble pairs
    • Ninio J (1979) Prediction of pairing schemes in RNA molecules. Loop contributions and energy of wobble and non-wobble pairs. Biochimie 61: 1133-1150
    • (1979) Biochimie , vol.61 , pp. 1133-1150
    • Ninio, J.1
  • 47
    • 0019082587 scopus 로고
    • Fast algorithm for predicting the secondary structure of single stranded RNA
    • Nussinov R, Jacobson AB (1980) Fast algorithm for predicting the secondary structure of single stranded RNA. Proc Natl Acad Sci USA 77: 6309-6313
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 6309-6313
    • Nussinov, R.1    Jacobson, A.B.2
  • 48
    • 0020053976 scopus 로고
    • Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA
    • Nussinov R, Tinoco Jr I (1982) Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. Nucl Acids Res 10: 341-350
    • (1982) Nucl Acids Res , vol.10 , pp. 341-350
    • Nussinov, R.1    Tinoco Jr., I.2
  • 49
    • 0008339613 scopus 로고
    • A unified view on tree metrics
    • Ferraté G (ed) Syntactic and structural pattern recognition. Springer, Berlin Heidelberg New York
    • Ohmori K, Tanaka E (1988) A unified view on tree metrics. In: Ferraté G (ed) Syntactic and structural pattern recognition. NATO ASI Series Vol F45. Springer, Berlin Heidelberg New York, pp 85-100
    • (1988) NATO ASI Series , vol.F45 , pp. 85-100
    • Ohmori, K.1    Tanaka, E.2
  • 50
    • 0022523096 scopus 로고
    • Ribosomal RNA phylogeny and primary lines of evolutionary descent
    • Pace N, Olsen G, Woese C (1986) Ribosomal RNA phylogeny and primary lines of evolutionary descent. Cell 45: 325-326
    • (1986) Cell , vol.45 , pp. 325-326
    • Pace, N.1    Olsen, G.2    Woese, C.3
  • 51
    • 0021760007 scopus 로고
    • An energy model that predicts the correct folding of both tRNA and the 5S RNA molecules
    • Papanicolaou C, Gouy M, Ninio J (1984) An energy model that predicts the correct folding of both tRNA and the 5S RNA molecules. Nucl Acids Res 12: 31-44
    • (1984) Nucl Acids Res , vol.12 , pp. 31-44
    • Papanicolaou, C.1    Gouy, M.2    Ninio, J.3
  • 52
    • 0025900996 scopus 로고
    • Thermodynamic study of internal loops in oligoribonucleotides: Symmetric loops are more stable than asymmetric loops
    • Peritz AE, Kierzek R, Sugimoto N, Turner DH (1991) Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops. Biochemistry 30: 6428-6436
    • (1991) Biochemistry , vol.30 , pp. 6428-6436
    • Peritz, A.E.1    Kierzek, R.2    Sugimoto, N.3    Turner, D.H.4
  • 53
    • 0025351085 scopus 로고
    • Pseudoknots: A new motif in the RNA game
    • Pleij CWA (1990) Pseudoknots: a new motif in the RNA game. TIBS 15: 143-147
    • (1990) TIBS , vol.15 , pp. 143-147
    • Pleij, C.W.A.1
  • 54
    • 0022423219 scopus 로고
    • A new principle of RNA folding based on pseudoknotting
    • Pleij CWA, Rietveld K, Bosch L (1995) A new principle of RNA folding based on pseudoknotting. Nucl Acids Res 13: 1717-1731
    • (1995) Nucl Acids Res , vol.13 , pp. 1717-1731
    • Pleij, C.W.A.1    Rietveld, K.2    Bosch, L.3
  • 55
    • 0017359465 scopus 로고
    • Elementary steps in base recognition and helix-coil transitions in nucleic acids
    • Pecht I, Rigler T (eds) Chemical relaxation in molecular biology. Springer. Berlin Heidelberg New York
    • Pörschke D (1977) Elementary steps in base recognition and helix-coil transitions in nucleic acids. In: Pecht I, Rigler T (eds) Chemical relaxation in molecular biology. Molecular biology, biochemistry and biophysics, vol 24. Springer. Berlin Heidelberg New York, pp 191-218
    • (1977) Molecular Biology, Biochemistry and Biophysics , vol.24 , pp. 191-218
    • Pörschke, D.1
  • 56
  • 57
    • 33746827661 scopus 로고
    • Generic properties of combinatory maps. Neutral networks of RNA secondary structures
    • in press
    • Reidys C, Stadler PF, Schuster P (1995) Generic properties of combinatory maps. Neutral networks of RNA secondary structures. Bull Math Biol (in press)
    • (1995) Bull Math Biol
    • Reidys, C.1    Stadler, P.F.2    Schuster, P.3
  • 58
    • 0003040028 scopus 로고    scopus 로고
    • Bio-molecular shapes and algebraic structures
    • Reidys C, Stadler PF (1996) Bio-molecular shapes and algebraic structures. Computers Chem 20: 85-94
    • (1996) Computers Chem , vol.20 , pp. 85-94
    • Reidys, C.1    Stadler, P.F.2
  • 59
    • 0017719636 scopus 로고
    • Globin messenger sequences - Analysis of base-pairing and evolutionary implications
    • Salser W (1977) Globin messenger sequences - Analysis of base-pairing and evolutionary implications. Cold Spring Harbor Symp. Quant Biol 42: 985-1002
    • (1977) Cold Spring Harbor Symp. Quant Biol , vol.42 , pp. 985-1002
    • Salser, W.1
  • 61
    • 0026562625 scopus 로고
    • Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin
    • Santa Lucia Jr J, Kierzek R, Turner DH (1992) Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin. Science 256: 217-219
    • (1992) Science , vol.256 , pp. 217-219
    • Santa Lucia Jr., J.1    Kierzek, R.2    Turner, D.H.3
  • 62
    • 0027180473 scopus 로고
    • An RNA motif that binds ATP
    • Sassanfar M, Szostak JW (1993) An RNA motif that binds ATP. Nature 364: 550-553
    • (1993) Nature , vol.364 , pp. 550-553
    • Sassanfar, M.1    Szostak, J.W.2
  • 63
    • 0028502408 scopus 로고
    • Landscapes. Complex optimization problems and biopolymer structures
    • Schuster P, Stadler PF (1994) Landscapes. Complex optimization problems and biopolymer structures. Computers Chem 18: 295-324
    • (1994) Computers Chem , vol.18 , pp. 295-324
    • Schuster, P.1    Stadler, P.F.2
  • 64
    • 0028196714 scopus 로고
    • From sequences to shapes and back: A case study in RNA secondary structures
    • Schuster P, Fontana W, Stadler PF, Hofacker IL (1994) From sequences to shapes and back: a case study in RNA secondary structures. Proc R Soc Lond B 255: 279-284
    • (1994) Proc R Soc Lond B , vol.255 , pp. 279-284
    • Schuster, P.1    Fontana, W.2    Stadler, P.F.3    Hofacker, I.L.4
  • 66
    • 0024061490 scopus 로고
    • An algorithm for comparing multiple RNA secondary structures
    • Shapiro BA (1988) An algorithm for comparing multiple RNA secondary structures. CABIOS 4: 381-393
    • (1988) CABIOS , vol.4 , pp. 381-393
    • Shapiro, B.A.1
  • 67
    • 0025187499 scopus 로고
    • Comparing multiple RNA secondary structures using tree comparisons
    • Shapiro BA, Zhang K (1990) Comparing multiple RNA secondary structures using tree comparisons. CABlOS 6: 309-318
    • (1990) CABlOS , vol.6 , pp. 309-318
    • Shapiro, B.A.1    Zhang, K.2
  • 68
    • 0029276567 scopus 로고
    • Optimization and performance analysis of a massively parallel dynamic programming algorithm for RNA secondary structure prediction
    • Shapiro BA, Chen JH, Busse T, Navetta J, Kasprzak W, Maizel J (1995) Optimization and performance analysis of a massively parallel dynamic programming algorithm for RNA secondary structure prediction. Int J Supercomp Appl 9: 29-39
    • (1995) Int J Supercomp Appl , vol.9 , pp. 29-39
    • Shapiro, B.A.1    Chen, J.H.2    Busse, T.3    Navetta, J.4    Kasprzak, W.5    Maizel, J.6
  • 69
    • 0038900707 scopus 로고
    • Linear operators on correlated landscapes
    • Stadler PF (1994) Linear operators on correlated landscapes. J Phys I France 4: 681-696
    • (1994) J Phys I France , vol.4 , pp. 681-696
    • Stadler, P.F.1
  • 70
    • 0002196313 scopus 로고
    • Towards a theory of landscapes
    • Lopéz-Peña R, García-Pelayo R, Waelbroeck H, Zertuche F (eds) Springer, Berlin Heidelberg New York
    • Stadler PF (1995) Towards a theory of landscapes. In: Lopéz-Peña R, García-Pelayo R, Waelbroeck H, Zertuche F (eds) Complex systems and binary networks. Springer, Berlin Heidelberg New York, pp 77-163
    • (1995) Complex Systems and Binary Networks , pp. 77-163
    • Stadler, P.F.1
  • 71
    • 0000856790 scopus 로고
    • The landscape of the travelling salesman problem
    • Stadler PF, Schnable W (1992) The landscape of the travelling salesman problem. Phys Lett A 161: 337-344
    • (1992) Phys Lett A , vol.161 , pp. 337-344
    • Stadler, P.F.1    Schnable, W.2
  • 72
    • 0027752959 scopus 로고
    • Anisotropy in fitness landscapes
    • Stadler PF, Grüner W (1993) Anisotropy in fitness landscapes. J Theor Biol 165: 373-388
    • (1993) J Theor Biol , vol.165 , pp. 373-388
    • Stadler, P.F.1    Grüner, W.2
  • 73
    • 0030536319 scopus 로고    scopus 로고
    • Local minima of p-spin models
    • Stadler PF, Krakhofer B (1996) Local minima of p-spin models. Rev Mex Fis 42: 355-363
    • (1996) Rev Mex Fis , vol.42 , pp. 355-363
    • Stadler, P.F.1    Krakhofer, B.2
  • 74
    • 0023653195 scopus 로고
    • Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid
    • Sugimoto N, Kierzek R, Turner DH (1987a) Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid. Biochemistry 26: 4554-4558
    • (1987) Biochemistry , vol.26 , pp. 4554-4558
    • Sugimoto, N.1    Kierzek, R.2    Turner, D.H.3
  • 75
    • 0023653202 scopus 로고
    • Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides
    • Sugimoto N, Kierzek R, Turner DH (1987b) Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides. Biochemistry 26: 4559-4561
    • (1987) Biochemistry , vol.26 , pp. 4559-4561
    • Sugimoto, N.1    Kierzek, R.2    Turner, D.H.3
  • 77
    • 0018491659 scopus 로고
    • The tree-to-tree correction problem
    • Tai K (1979) The tree-to-tree correction problem. J Ass Comput Mach 26: 422-433
    • (1979) J Ass Comput Mach , vol.26 , pp. 422-433
    • Tai, K.1
  • 79
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 80
    • 0015216137 scopus 로고
    • Estimation of secondary structure in nucleic acids
    • Tinoco Jr I, Uhlenbeck OC, Levine MD (1971) Estimation of secondary structure in nucleic acids. Nature 230: 362-367
    • (1971) Nature , vol.230 , pp. 362-367
    • Tinoco Jr., I.1    Uhlenbeck, O.C.2    Levine, M.D.3
  • 83
    • 0001509501 scopus 로고
    • Secondary structure of single-stranded nucleic acids
    • Waterman MS (1978) Secondary structure of single-stranded nucleic acids. Adv Math Suppl Studies 1: 167-212
    • (1978) Adv Math Suppl Studies , vol.1 , pp. 167-212
    • Waterman, M.S.1
  • 84
    • 0018254569 scopus 로고
    • RNA secondary structure: A complete mathematical analysis
    • Waterman MS, Smith TF (1978) RNA secondary structure: a complete mathematical analysis. Math Biosci 42: 257-266
    • (1978) Math Biosci , vol.42 , pp. 257-266
    • Waterman, M.S.1    Smith, T.F.2
  • 85
    • 0022380106 scopus 로고
    • A dynamic programming algorithm to find all solutions in a neighborhood of the optimum
    • Waterman MS, Byers TH (1985) A dynamic programming algorithm to find all solutions in a neighborhood of the optimum. Math Biosci 77: 179-188
    • (1985) Math Biosci , vol.77 , pp. 179-188
    • Waterman, M.S.1    Byers, T.H.2
  • 86
    • 0006572674 scopus 로고
    • Rapid dynamic programming algorithms for RNA secondary structure
    • Waterman MS, Smith TF (1986) Rapid dynamic programming algorithms for RNA secondary structure. Adv Appl Math 7: 455-464
    • (1986) Adv Appl Math , vol.7 , pp. 455-464
    • Waterman, M.S.1    Smith, T.F.2
  • 87
    • 0039080150 scopus 로고
    • Consensus methods for folding single-stranded nucleic acids
    • Waterman MS (ed) CRC Press, Boca Raton FL
    • Waterman MS (1989) Consensus methods for folding single-stranded nucleic acids. In: Waterman MS (ed) Mathematical methods for DNA sequences. CRC Press, Boca Raton FL, pp 185-224
    • (1989) Mathematical Methods for DNA Sequences , pp. 185-224
    • Waterman, M.S.1
  • 88
    • 0024991769 scopus 로고
    • Correlated and uncorrelated fitness landscapes and how to tell the difference
    • Weinberger ED (1990) Correlated and uncorrelated fitness landscapes and how to tell the difference. Biol Cybern 63: 325-336
    • (1990) Biol Cybern , vol.63 , pp. 325-336
    • Weinberger, E.D.1
  • 90
    • 0000907353 scopus 로고
    • The roles of mutation, inbreeding, crossbreeding and selection in evolution
    • Jones DF (ed)
    • Wright S (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution. In: Jones DF (ed) Proceedings of the Sixth International Congress on Genetics, vol 1, pp 356-366
    • (1932) Proceedings of the Sixth International Congress on Genetics , vol.1 , pp. 356-366
    • Wright, S.1
  • 91
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker M (1989a) On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1
  • 92
    • 0001947120 scopus 로고
    • The use of dynamic programming algorithms in RNA secondary structure predictions
    • Waterman MS (ed) CRC Press, Boca Raton, FL
    • Zuker M (1989b) The use of dynamic programming algorithms in RNA secondary structure predictions. In: Waterman MS (ed) Mathematical Methods for DNA Sequences. CRC Press, Boca Raton, FL, pp 159-184
    • (1989) Mathematical Methods for DNA Sequences , pp. 159-184
    • Zuker, M.1
  • 93
    • 0019876473 scopus 로고
    • Optimal computer colding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker M, Stiegler P (1981) Optimal computer colding of large RNA sequences using thermodynamics and auxiliary information. Nucl Acids Res 9: 133-148
    • (1981) Nucl Acids Res , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2
  • 94
    • 0000616205 scopus 로고
    • RNA secondary structures and their prediction
    • Zuker M, Sankoff D (1984) RNA secondary structures and their prediction. Bull Math Biol 46: 591-621
    • (1984) Bull Math Biol , vol.46 , pp. 591-621
    • Zuker, M.1    Sankoff, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.