-
2
-
-
0024964655
-
Gap costs for multiple sequence alignment
-
S. F. Altschul. Gap costs for multiple sequence alignment. J. Theor.Bioi, 138:297-309, 1989.
-
(1989)
J. Theor.Bioi
, vol.138
, pp. 297-309
-
-
Altschul, S.F.1
-
3
-
-
0000773502
-
Trees, stars and multiple biological sequence alignment
-
S. F. Altschul and D. J. Lipman. Trees, stars and multiple biological sequence alignment. SIAM J. Appl. Math., 49:197-209,1989.
-
(1989)
SIAM J. Appl. Math.
, vol.49
, pp. 197-209
-
-
Altschul, S.F.1
Lipman, D.J.2
-
4
-
-
0000303438
-
The multiple sequence alignment problem in biology
-
H. Carrillo and D. Lipman. The multiple sequence alignment problem in biology. SIAM J. Appl. Math., 48:1073-1082, 1988.
-
(1988)
SIAM J. Appl. Math.
, vol.48
, pp. 1073-1082
-
-
Carrillo, H.1
Lipman, D.2
-
5
-
-
0024297354
-
Multiple sequence alignment with hierarchial clustering
-
F. Corpet. Multiple sequence alignment with hierarchial clustering. Nucleic Acids Research, 16:10881-10890,1988.
-
(1988)
Nucleic Acids Research
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
6
-
-
0026888975
-
Sparse dynamic programming I: Linear cost functions
-
D. Eppstein, Z. Galil, R. Giancarlo, and G. F. Italiano. Sparse dynamic programming I: linear cost functions. Journal of the ACM, 39:519-545,1992.
-
(1992)
Journal of the ACM
, vol.39
, pp. 519-545
-
-
Eppstein, D.1
Galil, Z.2
Giancarlo, R.3
Italiano, G.F.4
-
7
-
-
0023084055
-
Progressive sequence align-ment as a prerequisite to correct phylogenetic trees
-
D.-F. Feng and R. F. Doolittle. Progressive sequence align-ment as a prerequisite to correct phylogenetic trees. J. Mol. Evol, 25:351-360,1987.
-
(1987)
J. Mol. Evol
, vol.25
, pp. 351-360
-
-
Feng, D.-F.1
Doolittle, R.F.2
-
8
-
-
0023833640
-
Timestamps in message-passing systems that preserve the partial ordering
-
C. J. Fidge. Timestamps in message-passing systems that preserve the partial ordering. In 11-th Australian Computer Science Conference, pages 55-66, 1988.
-
(1988)
11-th Australian Computer Science Conference
, pp. 55-66
-
-
Fidge, C.J.1
-
10
-
-
0023044227
-
Alignment of three biological sequences with an efficient traceback procedure
-
O. Gotoh. Alignment of three biological sequences with an efficient traceback procedure. J. Theor.Biol., 121:327-337, 1986.
-
(1986)
J. Theor.Biol.
, vol.121
, pp. 327-337
-
-
Gotoh, O.1
-
11
-
-
0027210418
-
Optimal alignment between groups of sequences and its application to multiple sequence alignment
-
O. Gotoh. Optimal alignment between groups of sequences and its application to multiple sequence alignment. CABIOS, 9:361-370,1993.
-
(1993)
CABIOS
, vol.9
, pp. 361-370
-
-
Gotoh, O.1
-
12
-
-
0028041177
-
Further improvement in methods of group-to-group sequence alignment with generalized profile operations
-
O. Gotoh. Further improvement in methods of group-to-group sequence alignment with generalized profile operations. CABIOS, 10:379-387,1994.
-
(1994)
CABIOS
, vol.10
, pp. 379-387
-
-
Gotoh, O.1
-
13
-
-
0024766957
-
A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phytogeny is given
-
J.Hein. A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phytogeny is given. Molecular Biology and Evolution., 6:649-668,1989.
-
(1989)
Molecular Biology and Evolution.
, vol.6
, pp. 649-668
-
-
Hein, J.1
-
14
-
-
0025342577
-
Unified approach to alignment and phytogenies
-
J. Hein. Unified approach to alignment and phytogenies. Methods in Enzymology, 183:626-645,1990.
-
(1990)
Methods in Enzymology
, vol.183
, pp. 626-645
-
-
Hein, J.1
-
16
-
-
0024598146
-
Fast and sensitive multiple se-quence alignments on a microcomputer
-
D. Higgins and P. Sharp. Fast and sensitive multiple se-quence alignments on a microcomputer. CABIOS, 5:151-153, 1989.
-
(1989)
CABIOS
, vol.5
, pp. 151-153
-
-
Higgins, D.1
Sharp, P.2
-
17
-
-
0021160693
-
The alignment of sets of se-quences and the construction of phyletic trees: An integrated method
-
P. Hogeweg and B. Hesper. The alignment of sets of se-quences and the construction of phyletic trees: an integrated method. J. Mol. Evol, 20:175-186,1984.
-
(1984)
J. Mol. Evol
, vol.20
, pp. 175-186
-
-
Hogeweg, P.1
Hesper, B.2
-
18
-
-
0023014930
-
Amortized efficiency of a path retrieval data structure
-
G. F. Italiano. Amortized efficiency of a path retrieval data structure. Theor. Comput. Set, 48:273-281,1986.
-
(1986)
Theor. Comput. Set
, vol.48
, pp. 273-281
-
-
Italiano, G.F.1
-
20
-
-
0038673215
-
Patterns in dna and amino acid sequences and their statistical significance
-
M. Waterman, editor, CRC Press
-
S. Karlin, F. Ost, and E. Blaisdell. Patterns in dna and amino acid sequences and their statistical signifiance. In M. Waterman, editor, Mathematical Methods for DNA Sequences. CRC Press, 1989.
-
(1989)
Mathematical Methods for DNA Sequences
-
-
Karlin, S.1
Ost, F.2
Blaisdell, E.3
-
21
-
-
84976712224
-
Rapid identification of repeated patterns in strings, trees, and arrays
-
R. M. Karp, R. E. Miller, and A. L. Rosenberg. Rapid identification of repeated patterns in strings, trees, and arrays. In Proc. Fourth ACM Symp. on Theory of Computing, pages 125-136,1972.
-
(1972)
Proc. Fourth ACM Symp. on Theory of Computing
, pp. 125-136
-
-
Karp, R.M.1
Miller, R.E.2
Rosenberg, A.L.3
-
22
-
-
85034629709
-
Maintenance of tran-sitive closure and transitive reduction of graphs
-
Lecture Notes in Computer Science 314, Springer-Verlag
-
J. A. La PoutaS and J. van Leeuwen. Maintenance of tran-sitive closure and transitive reduction of graphs. In Proc. Workshop on Graph-Theoretic Concepts in Computer Sci-ence, pages 106-120. Lecture Notes in Computer Science 314, Springer-Verlag, 1988.
-
(1988)
Proc. Workshop on Graph-Theoretic Concepts in Computer Science
, pp. 106-120
-
-
La Poutas, J.A.1
Van Leeuwen, J.2
-
23
-
-
0017996760
-
Time clocks and the ordering of events in a distributed system
-
L. Lamport. Time, clocks and the ordering of events in a distributed system. Comm. of the ACM, 21:558-565,1978.
-
(1978)
Comm. of the ACM
, vol.21
, pp. 558-565
-
-
Lamport, L.1
-
25
-
-
0024284078
-
A flexible multiple sequence alignment program
-
H. M. Martinez. A flexible multiple sequence alignment program. Nucleic Acids Research, 16:1683-1692,1988.
-
(1988)
Nucleic Acids Research
, vol.16
, pp. 1683-1692
-
-
Martinez, H.M.1
-
29
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
S. B. Needleman and C. D. Wunsch. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol, 48:443-453,1970.
-
(1970)
J. Mol. Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
30
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
R.F.Smith and T.F.Smith. Automatic generation of primary sequence patterns from sets of related protein sequences. In Proc. Natl. Acad. Sci., volume 87, pages 118-122,1990.
-
(1990)
Proc. Natl. Acad. Sci.
, vol.87
, pp. 118-122
-
-
Smith, R.F.1
Smith, T.F.2
-
31
-
-
0023045778
-
A multiple sequence alignment program
-
E. Sobel and H. M. Martinez. A multiple sequence alignment program. Nucleic Acids Research, 14:363-374, 1986.
-
(1986)
Nucleic Acids Research
, vol.14
, pp. 363-374
-
-
Sobel, E.1
Martinez, H.M.2
-
32
-
-
0024331858
-
A method for multiple se-quence alignment with gaps
-
S. Subbiah and S. C. Harrison. A method for multiple se-quence alignment with gaps. Journal of Molecular Biology, 209:539-548,1989.
-
(1989)
Journal of Molecular Biology
, vol.209
, pp. 539-548
-
-
Subbiah, S.1
Harrison, S.C.2
-
33
-
-
0024245156
-
A flexible method to align large numbers of biological sequences
-
W. R. Taylor. A flexible method to align large numbers of biological sequences. J. Mol. Evol, 28:161-169,1988.
-
(1988)
J. Mol. Evol
, vol.28
, pp. 161-169
-
-
Taylor, W.R.1
-
34
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive mul-tiple sequence alignment through sequence weighting, posi-tion specific gap penalties and weight matrix choice
-
J. D. Thompson, D. G. Higgins, and T. J. Gibson. CLUSTAL W: improving the sensitivity of progressive mul-tiple sequence alignment through sequence weighting, posi-tion specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673-4680,1994.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0028679709
-
On the complexity of multiple se-quence alignment
-
L. Wang and T. Jiang. On the complexity of multiple se-quence alignment. J. Comput. Biol., 1:337-348, 1994.
-
(1994)
J. Comput. Biol.
, vol.1
, pp. 337-348
-
-
Wang, L.1
Jiang, T.2
-
36
-
-
0021451172
-
The context dependent comparison of biological sequences
-
W. J. Wilbur and D. J. Lipman. The context dependent comparison of biological sequences. SIAM J. Appl. Math., 44:556-567,1984.
-
(1984)
SIAM J. Appl. Math.
, vol.44
, pp. 556-567
-
-
Wilbur, W.J.1
Lipman, D.J.2
-
37
-
-
21144470552
-
Speeding up dynamic transitive closure for bounded degree graphs
-
D. M. Yellin. Speeding up dynamic transitive closure for bounded degree graphs. Acta Informatica, 30:369-384, 1993.
-
(1993)
Acta Informatica
, vol.30
, pp. 369-384
-
-
Yellin, D.M.1
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