Structural studies of the ionizing radiation adduct 7,8-dihydro-8-oxoadenine (Aoxo) positioned opposite thymine in a DNA duplex

Magnetic Resonance in Chemistry

Volumn 34, Issue 13, 1996, Pages

  Chen, Huifen ^a   Johnson, Francis ^b   Grollman, Arthur P ^b   Patel, Dinshaw J ^a,c  

^a Surgeons of Columbia University ^*  (United States)

^b STONY BROOK UNIVERSITY   (United States)

^c MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

1H NMR; Aoxo T alignment; NMR; Oxidative damage; Solution structure

Indexed keywords

ALIGNMENT; BIOINFORMATICS; DNA; HYDROGEN BONDS; MOLECULAR DYNAMICS; REACTION KINETICS;

1H NMR; ADDUCT 8-OXO-7H-ADENINE · T ALIGNMENT; BASE PAIRS; DNA DUPLEXES; OXIDATIVE DAMAGE; OXIDATIVE DNA DAMAGE; PRIMER EXTENSION; REACTION CATALYZED; SOLUTION STRUCTURES; STRUCTURAL STUDIES;

IONIZING RADIATION;

EID: 0030361942     PISSN: 07491581     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-458x(199612)34:133.3.co;2-m     Document Type: Article

References (44)

1. J. F. Ward, Prog. Nucleic Acids Res. Mol. Biol. 35, 95 (1988).
2. J. Hutterman, W. Kohnlein and R. Teoule, in Effect of Ionizing Radiation on DNA, edited by A. J. Bertinchamps. Springer, New York (1978).
3. P. A. Cerutti, Science 227, 375 (1985).
4. J. DiGuiseppi and I. Fridovich, Crit. Rev. Toxicol. 12, 315 (1984).
5. L. H. Breimer, Br. J. Cancer 57, 6 (1988).
6. H. Kasai and S. Nishimura, Nuclei Acids Res. 12, 2137 (1984).
7. M. Dizdaroglu, Biochemistry 24, 4476 (1985).
8. J. J. Conley, Nature (London) 197, 555 (1963).
9. M. L. Wood, M. Dizdaroglu, E. Gajewski and J. M. Essigmann, Biochemistry 29, 7024 (1990).
10. S. Shibutani, M. Takeshita and A. P. Grollman, Nature (London) 349, 431 (1991).
11. H. Kamiya, N. Murata-Kamiya, S. Koizume, H. Inoue, S. Nishimura and E. Ohtsuka, Carcinogenesis 16, 883 (1995).
12. K. C. Chang, D. S. Cahill, H. Kasai, S. Nishimura and L. A. Loeb, J. Biol. Chem. 267, 166 (1992).
13. M. Kouchakdjian, V. Bodepudi, S. Shibutani, M. Eisenberg, F. Johnson, A. P. Grollman and D. J. Patel, Biochemistry 30, 1403 (1991).
14. K. E. Mcauley-Hecht, G. A. Leonard, N. J. Gibson, J. B. Thomson, W. P. Watson, W. N. Hunter and T. Brown, Biochemistry 33, 10266 (1994).
15. Y. Oda, S. Uesugi, M. Ikehara, S. Nishimura, Y. Kawase, H. Ishikawa, H. Inoue and E. Ohtsuka, Nucleic Acids Res. 19, 1407 (1991).
16. L. A. Lipscomb, M. E. Peek, M. L. Morningstar, S. M. Verghis, E. M. Miller, A. Rich, J. M. Essigmann and L. D. Williams, Proc. Natl. Acad. Sci. USA 92, 719 (1995).
17. G. E. Plum, A. P. Grollman, F. Johnson and K. J. Breslauer, Biochemistry 34, 16148 (1995).
18. S. Shibutani, V. Bodepudi, F. Johnson and A. P. Grollman, Biochemistry 32, 4615 (1993).
19. S. Shibutani, Chem. Res. Toxicol. 6, 625 (1993).
20. H. Kamiya, H. Miura, N. Murata-Kamiya, H. Ishikawa, T. Sakaguchi, H. Inoue, T. Sasaki, C. Masutani, F. Hanaoka, S. Nishimura and E. Ohtsuka, Nucleic Acids Res. 23, 2893 (1995).
21. W. Guschlbauer, A.-M. Duplan, A. Guy, R. Teoule and G. V. Fazakerley, Nucleic Acids Res. 19, 1753 (1991).
22. G. Leonard, A. Guy, T. Brown, R. Teoule and W. N. Hunter, Biochemistry 31, 8415 (1992).
23. H. Chen and D. J. Patel, J. Mol. Biol. 246, 164 (1995).
24. P. Plateau and M. Gueron, J. Am. Chem. Soc. 104, 7310 (1982).
25. D. States, R. A. Haberkorn and D. J. Ruben, J. Magn. Reson. 48, 286 (1982).
26. A. Bax and D. G. Davis, J. Magn. Reson. 65, 355 (1985).
27. D. Marion and K. Wuthrich, Biochem. Biophys. Res. Commun. 113, 967 (1983).
28. V. Sklenar and A. Bax, J. Am. Chem. Soc. 109, 7525 (1987).
29. T. M. G. Koning, R. Boelens and R. Kaptein, J. Magn. Reson. 90, 111 (1990).
30. W. Saenger, Principles of Nucleic Acid Structure. Springer, New York (1984).
31. V. A. Roongta, C. R. Jones and D. G. Gorenstein, Biochemistry 29, 5245 (1990).
32. A. T. Brunger, X-PLOR Version 3.0. Yale University, CT (1992).
33. M. Nilges, J. Habazettl, A. T. Brunger and T. A. Holak, J. Mol. Biol. 219, 499 (1991).
34. R. Lavery and H. Sklenar, J. Biomol. Struct. Dyn. 6, 655 (1989).
35. A. Guy, A. M. Duplaa, P. Harel and R. Teoule, Helv. Chim. Acta 71, 1566 (1988).
36. B. P. Cho and F. E. Evans, Nucleic Acids Res. 19, 1041 (1991).
37. S. Uesugi and M. Ikehara, J. Am. Chem. Soc. 99, 3250 (1977).
38. C. Giessner-Prettze and B. Pullman, J. Theor. Biol. 65, 189 (1977).
39. M. L. Michaels, L. Pham, C. Cruz and J. H. Miller, Nucleic Acids Res. 19, 3629 (1991).
40. T. Bessho, R. Roy, K. Yamamoto, H. Kasai, S. Nishimura, K. Tano and S. Mitra, Proc. Natl. Acad. Sci. USA 90, 8901 (1993).
41. S. Boiteux, E. Gajewski, J. Laval and M. Dizdaroglu, Biochemistry 31, 106 (1992).
42. J. Tchou, H. Kasai, S. Shibutani, M.-H. Chung, J. Laval, A. P. Grollman and S. Nishimura, Proc. Natl. Acad. Sci. USA 88, 4690 (1991).
43. J. Tchou, V. Bondepudi, S. Shibutani, I. Antoshechkin, J. Miller, A. P. Grollman and F. Johnson, J. Biol. Chem. 269, 15318 (1994).
44. J. L. Ravanat, M. Berger, S. Bioteux, J. Laval and J. Cadet, J. Chim. Phys. 90, 871 (1993).