Backbone conformational study of a non-palindromic 16 base pair DNA duplex exploring 2D 31P-1H heteronuclear inverse spectroscopy: Assignment of all NMR phosphorus resonances and measurement of 3J 31P-1H3′ coupling constants

Magnetic Resonance in Chemistry

Volumn 34, Issue 999, 1996, Pages

  Tisne, Carine ^a   Simenel, Catherine ^a   Hantz, Edith ^a   Schaeffer, Francis ^a   Delepierre, Muriel ^a  

^a CNRS   (France)

Author keywords

1H NMR; 31P NMR; Correlation; DNA; Heteronuclear coupling constant; NMR

Indexed keywords

CONFORMATIONS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OLIGONUCLEOTIDES;

1H NMR; 31P-NMR; BASE PAIRS; CONFORMATIONAL STUDY; CORRELATION; COUPLING CONSTANTS; DNA DUPLEXES; HETERONUCLEAR; HETERONUCLEAR COUPLING; HETERONUCLEAR COUPLING CONSTANT;

DNA;

EID: 0030357001     PISSN: 07491581     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-458x(199612)34:133.0.co;2-c     Document Type: Article

References (41)

1. S.-G. Kim, L.-J. Lin and B. R. Reid, Biochemistry 31, 3564 (1992).
2. T. L. James, in Phosphorus-31 NMR: Principles and Applications, edited by D. G. Gorenstein, p. 349. Academic Press, New York (1984).
3. D. G. Gorenstein, Methods Enzymol. 177, 295 (1989).
4. W. Saenger, Principles of Nucleic Acid Structure. Springer, New York (1984).
5. D. G. Gorenstein, S. A. Schroeder, J. M. Fu, J. T. Metz, V. Roongta and C. R. Jones, Biochemistry 27, 7223 (1988).
6. S. A. Schroeder, V. Roongta, J. M. Fu, C. R. Jones and D. G. Gorenstein, Biochemistry 28, 8292 (1989).
7. A. Lefebvre, O. Mauffret, B. Hartmann, E. Lescot and S. Fermandjian, Biochemistry 34, 12019 (1995).
8. V. Sklenér, H. Miyashiro, G. Zon, H. T. Miles and A. Bax FEBS Lett. 208, 94 (1986).
9. G. W. Kellogg, J. Magn. Reson. 98, 176 (1992).
10. G. W. Kellogg and B. I. Schweitzer, J. Biomol. NMR 3, 577 (1993).
11. K. Y. Wang, I. Goljer and P. H. Bolton, J. Magn. Reson. 103, 192 (1994).
12. V. V. Krishnamurthy, J. Magn. Reson. 106, 170 (1995).
13. S. E. Tong-Starksen, P. A. Luciw and B. M. Peterlin, Proc. Natl. Acad. Sci. USA 84, 6845 (1987).
14. L. Clark, J. R. Matthews and R. T. Hay, J. Virol. 64, 1335 (1990).
15. G. Nabel and D. Baltimore, Nature (London) 326, 711 (1987).
16. M. Delepierre, P. Sodano, C. Gouyette, A. Namane, J. Igolen and J.-L. Virelizier, Magn. Reson. Chem. in press.
17. D. J. States, R. A. Haberkorn and D. J. Ruben, J. Magn. Reson. 48, 286 (1982).
18. C. Griesinger, G. Otting, K. Wüthrich and R. R. Ernst, J. Am. Chem. Soc. 110, 7870 (1988).
19. G. Bodenhausen and D. J. Ruben, Chem. Phys. Lett. 69, 185 (1980).
20. D. Marion, M. Ikura, R. Tschudin and A. Bax, J. Magn. Reson. 85, 393 (1989).
21. A. Bax and D. G. Davis, J. Magn. Reson. 65, 355 (1985).
22. T. J. Norwood, J. Boyd, J. E. Heritage, N. Soffe and I. D. Campbell, J. Magn. Reson. 87, 488 (1990).
23. V. Sklenár and A. Bax, J. Am. Chem. Soc. 25, 7525 (1987).
24. E. Kupče, J. Boyd and I. D. Campbell, J. Magn. Reson. 106, 300 (1995).
25. P. P. Lankhorst, C. A. G. Haasnoot, C. Erkelens and C. Altona, J. Biomol. Struct. Dyn. 1, 1387 (1989).
26. A. Pardi, F. H. Martin and I. Tinoco, Jr, Biochemistry 20, 3986 (1981).
27. J. Feigon, W. A. Denny, W. Leupin and D. R. Kearns, Biochemistry 22, 5930 (1983).
28. E. Quignard, G. V. Fazakerley, R. Teoule, R. Guy and W. Guschlbauer, Eur. J. Biochem. 152, 99 (1985).
29. F. Schaeffer, A. Kolb and H. Buc, EMBO J. 1, 199 (1982).
30. G. M. Clore and A. M. Gronenborn, FEBS Lett. 179, 187 (1985).
31. K. Wüthrich, NMR of Proteins and Nucleic Acids. Wiley, New York (1986).
32. F. J. M. Van de Ven and C. W. Hilbers, Nucleic Acids Res. 16, 5713 (1988).
33. S. S. Wijmenga, M. M. W. Mooren and C. W. Hilbers, in NMR in Macromolecules: A Practical Approach, p. 217. Oxford University Press, Oxford (1993).
34. H. Shindo, Biopolymers 19, 509 (1980).
35. S. J. Opella, W. B. Wise and J. A. di Verdi, Biochemistry 20, 284 (1981).
36. H. J. Vogel, W. A. Bridger and B. D. Sykes, Biochemistry 21, 1126 (1982).
37. V. A. Roongta, C. R. Jones and D. G. Gorenstein, Biochemistry 29, 5245 (1990).
38. D. G. Gorenstein, Annu. Rev. Biophys. Bioeng. 10, 355 (1981).
39. J. Ott and F. Eckstein, Biochemistry 24, 2530 (1985).
40. E. P. Nikonowicz and D. G. Gorenstein, Biochemistry 29, 8845 (1990).
41. B. Hartmann, D. Piazzola and R. Lavery, Nucleic Acids Res. 21, 561 (1993).