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Volumn 6, Issue 2, 1996, Pages 109-117

Experiment files and their application during large-scale sequencing projects

Author keywords

Data processing; DNA sequencing; experiment files; file format; sequence assembly

Indexed keywords

ARTICLE; COMPUTER PROGRAM; SEQUENCE ANALYSIS;

EID: 0030341784     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425179609010197     Document Type: Article
Times cited : (74)

References (14)
  • 1
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    • The application of numerical estimates of base calling accuracy to DNA sequencing projects
    • Bonfield, J.K. and Staden, R. (1995). The application of numerical estimates of base calling accuracy to DNA sequencing projects. Nucleic Acids Res. 23, 1406-1410.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1406-1410
    • Bonfield, J.K.1    Staden, R.2
  • 3
    • 0025776579 scopus 로고
    • A sequence assembly and editing program for efficient management of large projects
    • Dear, S. and Staden, R. (1991). A sequence assembly and editing program for efficient management of large projects. Nucl. Acids Res. 19,3907-3911. (Pubitemid 21912760)
    • (1991) Nucleic Acids Research , vol.19 , Issue.14 , pp. 3907-3911
    • Dear, S.1    Staden, R.2
  • 4
    • 0027014799 scopus 로고
    • A standard file format for data from DNA sequencing instruments
    • Dear, S. and Staden, R. (1992). A standard file format for data from DNA sequencing instruments. DNA Sequence 3, 107-110.
    • (1992) DNA Sequence , vol.3 , pp. 107-110
    • Dear, S.1    Staden, R.2
  • 6
    • 0026693586 scopus 로고
    • A contig assembly program based on sensitive detection of fragment overlaps
    • Huang, X. (1992). A contig assembly program based on sensitive detection of fragment overlaps. Genomics 14, 18-25.
    • (1992) Genomics , vol.14 , pp. 18-25
    • Huang, X.1
  • 8
    • 0028074648 scopus 로고
    • The genome reconstruction manager: A software environment for supporting high-throughput DNA sequencing
    • DOI 10.1006/geno.1994.1477
    • Lawrence, C.B., Honda, S., Parrot, N.W., Flood, T.C., Gu, L., Zhang, L., Mudita, J' Larson, S. and Myers, E.W. (1994). The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing. Genomics 23, 192-201. (Pubitemid 24296953)
    • (1994) Genomics , vol.23 , Issue.1 , pp. 192-201
    • Lawrence, C.B.1    Honda, S.2    Parrott, N.W.3    Flood, T.C.4    Gu, L.5    Zhang, L.6    Jain, M.7    Larson, S.8    Myers, E.W.9
  • 9
    • 0028309899 scopus 로고
    • Using the FASTA program to search protein and DNA sequence databases
    • (A.M. Griffin and H.G. Griffin, Eds.), Humana Press Inc., Totawa, NJ
    • Pearson, W.R. (1994). Using the FASTA program to search protein and DNA sequence databases. In "Methods in molecular biology" (A.M. Griffin and H.G. Griffin, Eds.), Vol 25, pp. 365-389, Humana Press Inc., Totawa, NJ.
    • (1994) Methods in Molecular Biology , vol.25 , pp. 365-389
    • Pearson, W.R.1
  • 10
    • 0021760072 scopus 로고
    • SEQAID: A DNA sequence assembly program based on a mathematical model
    • Petola, H., Soderland, H. and Ukkonen, E (1984). SEQAID: a DNA sequence assembly program based on a mathematical model. Nucleic Acids Res. 12, 307-321
    • (1984) Nucleic Acids Res. , vol.12 , pp. 307-321
    • Petola, H.1    Soderland, H.2    Ukkonen, E.3
  • 11
    • 0027298398 scopus 로고
    • High throughput DNA sequencing using an automated electrophoresis analysis system and a novel sequence assembly program
    • Smith, S., Welch, W., Jakimcius, A., Dahlberg, T., Preston, E. and Van Dyke, D. (1993). High throughput DNA sequencing using an automated electrophoresis analysis system and a novel sequence assembly program. BioTechniques 14, 1014-1018. (Pubitemid 23166822)
    • (1993) BioTechniques , vol.14 , Issue.6 , pp. 1014-1018
    • Smith, S.1    Welch, W.2    Jakimcius, A.3    Dahlberg, T.4    Preston, E.5    Van Dyke, D.6
  • 12
    • 0018426987 scopus 로고
    • A strategy of DNA sequencing employing computer programs
    • Staden, R. (1979). A strategy of DNA sequencing employing computer programs. Nucleic Acids Res. 7, 2601-2610. (Pubitemid 9203506)
    • (1979) Nucleic Acids Research , vol.6 , Issue.7 , pp. 2601-2610
    • Staden, R.1
  • 13
    • 0020480482 scopus 로고
    • Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing
    • Staden, R. (1982). Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing. Nucl. Acids Res. 10, 4731-4751.
    • (1982) Nucl. Acids Res. , vol.10 , pp. 4731-4751
    • Staden, R.1
  • 14
    • 0001896188 scopus 로고
    • The Staden package
    • (A.M. Griffin and H.G. Griffin, Eds.), Humana Press Inc., Totawa, NJ
    • Staden, R. (1994). The Staden package. In "Methods in molecular biology" (A.M. Griffin and H.G. Griffin, Eds.), Vol 25, pp. 9-170, Humana Press Inc., Totawa, NJ.
    • (1994) Methods in Molecular Biology , vol.25 , pp. 9-170
    • Staden, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.