-
1
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
Altschul, S. F. 1991. Amino acid substitution matrices from an information theoretic perspective. J Mol Biol 219:555-565.
-
(1991)
J Mol Biol
, vol.219
, pp. 555-565
-
-
Altschul, S. F.1
-
2
-
-
0024974791
-
Weights for data related by a tree
-
Altschul, S. F., Carroll, R. J., and Lipman, D. J. 1989. Weights for data related by a tree. J Mol Biol 207:647¬ 653.
-
(1989)
J Mol Biol
, vol.207
, pp. 647-653
-
-
Altschul, S. F.1
Carroll, R. J.2
Lipman, D. J.3
-
3
-
-
0025882349
-
PROSITE: A dictionary of sites and patterns in proteins
-
Bairoch, A. 1991. PROSITE: A dictionary of sites and patterns in proteins. Nucl Acids Res 19:2241-2245.
-
(1991)
Nucl Acids Res
, vol.19
, pp. 2241-2245
-
-
Bairoch, A.1
-
4
-
-
0025303764
-
Protein multiple sequence alignment and flexible pattern matching
-
Barton, G. J. 1990. Protein multiple sequence alignment and flexible pattern matching. Meth Enzvmol 183:403¬ 427.
-
(1990)
Meth Enzvmol
, vol.183
, pp. 403-427
-
-
Barton, G. J.1
-
5
-
-
0024977234
-
Recognition of functional regions in primary structures using a set of property patterns
-
Bork, P. 1989. Recognition of functional regions in primary structures using a set of property patterns. Febs Letters 257:191-195.
-
(1989)
Febs Letters
, vol.257
, pp. 191-195
-
-
Bork, P.1
-
6
-
-
0027903113
-
Using Dirichlet mixture priors to derive hidden Markov models for protein families
-
Menlo Park, Calif.: A A A I Press
-
Brown, M., Hughey, R., Krogh, A., Mian, I. S., Sjölander, K ., and Haussler, D. 1993. Using Dirichlet mixture priors to derive hidden Markov models for protein families. In Proceedings of the First International Conference on Intelligent Systems for Molecular Biology, 47-55. Menlo Park, Calif.: A A A I Press.
-
(1993)
Proceedings of the First International Conference on Intelligent Systems for Molecular Biology
, pp. 47-55
-
-
Brown, M.1
Hughey, R.2
Krogh, A.3
Mian, I. S.4
Sjölander, K5
Haussler, D.6
-
7
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoff, M. O., Schwartz, R. M., and Orcutt, B. C. 1978. A model of evolutionary change in proteins. In Atlas of Protein Sequence and Function, Nat. Biomed. Research Foundation, pages 345-352.
-
(1978)
Atlas of Protein Sequence and Function, Nat. Biomed. Research Foundation
, pp. 345-352
-
-
Dayhoff, M. O.1
Schwartz, R. M.2
Orcutt, B. C.3
-
8
-
-
0029176320
-
How to make my blood boil
-
Goldman, A. 1995. How to make my blood boil. Structure 3:1277-1279.
-
(1995)
Structure
, vol.3
, pp. 1277-1279
-
-
Goldman, A.1
-
9
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gönnet, G. H., Cohen, M. A., and Benner, S. A. 1992. Exhaustive matching of the entire protein sequence database. Science 256:1443-1445.
-
(1992)
Science
, vol.256
, pp. 1443-1445
-
-
Gönnet, G. H.1
Cohen, M. A.2
Benner, S. A.3
-
10
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov, M., McLachlan, A. D., and Eisenberg, D. 1987. Profile analysis: Detection of distantly related proteins. Proc Natl Acad Sci USA 84:4355-4358.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A. D.2
Eisenberg, D.3
-
11
-
-
0026410103
-
Automated assembly of protein blocks for database searching
-
Henikoff, S. and Henikoff, J. G. 1991. Automated assembly of protein blocks for database searching. Nucl Acids Res 19:6565-572.
-
(1991)
Nucl Acids Res
, vol.19
, pp. 6565-6572
-
-
Henikoff, S.1
Henikoff, J. G.2
-
12
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J. G. 1992. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci 89:10915-10919.
-
(1992)
Proc Natl Acad Sci
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J. G.2
-
13
-
-
84910358038
-
Evolutionary model for the generation of amino acid sequences and its application to the study of mammal alpha-hemoglobin chains
-
Mexico City
-
Jiménez-Montano, M. A., and Zamora-Cortina, L. 1981. Evolutionary model for the generation of amino acid sequences and its application to the study of mammal alpha-hemoglobin chains. In Proceedings of the Seventh International Biophysics Congress, Mexico City.
-
(1981)
Proceedings of the Seventh International Biophysics Congress
-
-
Jiménez-Montano, M. A.1
Zamora-Cortina, L.2
-
14
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., Taylor, W. R., and Thornton, J. M. 1992. The rapid generation of mutation data matrices from protein sequences. Comp Appi Biosci 8:275-282.
-
(1992)
Comp Appi Biosci
, vol.8
, pp. 275-282
-
-
Jones, D. T.1
Taylor, W. R.2
Thornton, J. M.3
-
15
-
-
0021931978
-
Statistical analysis of the physical properties of the twenty naturally occurring amino acids
-
Kidera, A., Yonishi, Y ., Masahito, O., Ooi, T., and Scheraga, H. A. 1985. Statistical analysis of the physical properties of the twenty naturally occurring amino acids. JProtChem 4:23-55.
-
(1985)
JProtChem
, vol.4
, pp. 23-55
-
-
Kidera, A.1
Yonishi, Y2
Masahito, O.3
Ooi, T.4
Scheraga, H. A.5
-
16
-
-
0028181441
-
Hidden Markov models in computational biology: Applications to protein modeling
-
Krogh, A., Brown, M., Mian, I. S., Sjölander, K., and Haussler, D. 1994. Hidden Markov models in computational biology: Applications to protein modeling. J Mol Biol 235:1501-1531.
-
(1994)
J Mol Biol
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I. S.3
Sjölander, K.4
Haussler, D.5
-
18
-
-
0015243774
-
Tests for comparing related amino acid sequences
-
McLachlan, A. D. 1971. Tests for comparing related amino acid sequences. J Mol Biol 61:409-24.
-
(1971)
J Mol Biol
, vol.61
, pp. 409-424
-
-
McLachlan, A. D.1
-
19
-
-
0018415510
-
Two types of amino acid substitution in protein evolution
-
Miyata, T., Miyazawa, S., and Yasunaga, T. 1979. Two types of amino acid substitution in protein evolution. / Mo/£vo/ 12:219-236.
-
(1979)
Mo/£vo/
, vol.12
, pp. 219-236
-
-
Miyata, T.1
Miyazawa, S.2
Yasunaga, T.3
-
20
-
-
0029004046
-
Fuzzy cluster analysis of simple physicochemical properties of amino acids for recognizing secondary structure in proteins
-
Mocz, G. 1995. Fuzzy cluster analysis of simple physicochemical properties of amino acids for recognizing secondary structure in proteins. Protein Sci 4:1178-1187.
-
(1995)
Protein Sci
, vol.4
, pp. 1178-1187
-
-
Mocz, G.1
-
21
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander, C. and Schneider, R. 1991. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins: Structure, Function, and Genetics 9:56-68.
-
(1991)
Proteins: Structure, Function, and Genetics
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
22
-
-
0025641641
-
Weighting aligned protein or nucleic acid sequences to correct for unequal representation
-
Sibbald, P. R., and Argos, P. 1990. Weighting aligned protein or nucleic acid sequences to correct for unequal representation. J Mol Biol 216:813-818.
-
(1990)
J Mol Biol
, vol.216
, pp. 813-818
-
-
Sibbald, P. R.1
Argos, P.2
-
23
-
-
0025017156
-
Finding sequence motifs in groups of functionally related proteins
-
Smith, H. O., Annau, T. M., and Chandrasegaran, S. 1990. Finding sequence motifs in groups of functionally related proteins. Proc Natl Acad Sci USA 87:826-830.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 826-830
-
-
Smith, H. O.1
Annau, T. M.2
Chandrasegaran, S.3
-
24
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
Smith, R. F. and Smith, T. F. Automatic generation of primary sequence patterns from sets of related protein sequences. Proc Natl Acad Sci USA 87:118-122, 1990.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 118-122
-
-
Smith, R. F.1
Smith, T. F.2
-
25
-
-
0022591495
-
The classification of amino acid conservation
-
r/ié-or ßio
-
Taylor, W. R. The classification of amino acid conservation. / r/ié-or ßio/119:205-218, 1986.
-
(1986)
, vol.119
, pp. 205-218
-
-
Taylor, W. R.1
-
26
-
-
0027496980
-
Weighting in sequence space: a comparison of methods in terms of generalized sequences
-
Vingron, M., and Sibbald, P. R. 1993. Weighting in sequence space: a comparison of methods in terms of generalized sequences. Proc Natl Acad Sci USA 90:8777-8781.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 8777-8781
-
-
Vingron, M.1
Sibbald, P. R.2
-
27
-
-
0029046744
-
An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited
-
Vogt, G., Etzold, T., and Argos, P. An assessment of amino acid exchange matrices in aligning protein sequences: The twilight zone revisited. J Mol Biol 249:816-831, 1995.
-
(1995)
J Mol Biol
, vol.249
, pp. 816-831
-
-
Vogt, G.1
Etzold, T.2
Argos, P.3
|