-
1
-
-
0028812044
-
The chromo shadow domain, a second chromo domain in heterchronmtin-binding protein 1, HP1
-
Aasland, R., and Stewart, F.A. 1995. The chromo shadow domain, a second chromo domain in heterchronmtin-binding protein 1, HP1. Nucleic Acids Research 23:3168-3173.
-
(1995)
Nucleic Acids Research
, vol.23
, pp. 3168-3173
-
-
Aasland, R.1
Stewart, F.A.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F.; Gish, W.; Miller, W.; Myers, E. W.; and Lipman, D. J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S. F.1
Gish, W.2
Miller, W.3
Myers, E. W.4
Lipman, D. J.5
-
3
-
-
0002759539
-
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
-
Bailey, T., and Elkan, C. 1995. Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning 21:51-80.
-
(1995)
Machine Learning
, vol.21
, pp. 51-80
-
-
Bailey, T.1
Elkan, C.2
-
4
-
-
0026553672
-
PROSITE:a dictionary of sites and patterns in proteins
-
Bairoch, A. 1992. PROSITE:a dictionary of sites and patterns in proteins. Nucleic Acids Research 20:2013-2018.
-
(1992)
Nucleic Acids Research
, vol.20
, pp. 2013-2018
-
-
Bairoch, A.1
-
5
-
-
0004206058
-
-
Technical Report TR-113, Department of Informatics, University of Bergen, Bergen, Norway. (Available at ps)
-
Brazma, A.; Jonassen, I.; Eidhammer, I.; and Gilbert, D. 1995. Approaches to automatic discovery of patterns in biosequences. Technical Report TR-113, Department of Informatics, University of Bergen, Bergen, Norway. (Available at ftp://ftp.ii.uib.no/pub/bio/papers/survey, ps).
-
(1995)
Approaches to automatic discovery of patterns in biosequences
-
-
Brazma, A.1
Jonassen, I.2
Eidhammer, I.3
Gilbert, D.4
-
6
-
-
84990178288
-
-
Technical Report C-1995-60, Department of Computer Science, University of Helsinki, P. O. Bo 26, FIN-00014, University of Helsinki. (Available at)
-
Brazma,A.;Ukkonen,E.;andVilo,J. 1995.Find-inga goodcollection ofpatterns covering a setofsequences.Technical Report C-1995-60, Department of Computer Science, University of Helsinki, P. O. Bo 26, FIN-00014, University of Helsinki. (Available at ftp://ftp.cs.helsinki, f i/pub/Reports/).
-
(1995)
Find-inga goodcollection ofpatterns covering a setofsequences
-
-
Brazma, A.1
Ukkonen, E.2
andVilo, J.3
-
7
-
-
0000301097
-
A greedy heuristic for the set-covering problem
-
ChvAtal, V. 1979. A greedy heuristic for the set-covering problem. Math. Oper. Res. 4:233-235.
-
(1979)
Math. Oper. Res
, vol.4
, pp. 233-235
-
-
ChvAtal, V.1
-
8
-
-
0000197922
-
Machine discovery of protein motifs
-
Conklin, D. 1995. Machine discovery of protein motifs. Machine Learning 21:125-150.
-
(1995)
Machine Learning
, vol.21
, pp. 125-150
-
-
Conklin, D.1
-
9
-
-
0027457706
-
SRS - an indexing and retrieval tool for flat file data libraries
-
Etzold, T., and Argos, P. 1993. SRS - an indexing and retrieval tool for flat file data libraries. Comput Appl Biosci 9:49-57.
-
(1993)
Comput Appl Biosci
, vol.9
, pp. 49-57
-
-
Etzold, T.1
Argos, P.2
-
11
-
-
0029159799
-
Finding flexible patterns in unaligned protein sequences
-
Jonassen, I.; Collins, J. F.; and Higgins, D. G. 1995. Finding flexible patterns in unaligned protein sequences. Protein Science 4(8):1587-1595.
-
(1995)
Protein Science
, vol.4
, Issue.8
, pp. 1587-1595
-
-
Jonassen, I.1
Collins, J. F.2
Higgins, D. G.3
-
12
-
-
85166256966
-
-
Technical Report 116, Departmentof Informatics, University of Bergen, Bergen, Norway
-
Jonassen, I.; Helgesen, C.; and Higgins, D. 1996. Scoring function for pattern discovery programs taking into account sequence diversity. Technical Report 116, Departmentof Informatics, University of Bergen, Bergen, Norway.
-
(1996)
Scoring function for pattern discovery programs taking into account sequence diversity
-
-
Jonassen, I.1
Helgesen, C.2
Higgins, D.3
-
13
-
-
24044530497
-
Efficient discovery of conserved patterns using a pattern graph
-
Reports in Informatics in preparation, Dept. of Informatics, Unviersity of Bergen. (Available at)
-
Jonassen, I. 1996. Efficient discovery of conserved patterns using a pattern graph. Reports in Informatics in preparation, Dept. of Informatics, Unviersity of Bergen. (Available at ftp://ftp.±i.uib.no/pub/bio/papers/).
-
(1996)
-
-
Jonassen, I.1
-
15
-
-
0028181441
-
Hidden Markov model in computational biology. Applications to protein modelling
-
Krogh, A.; Brown, M.; Mian, I. S.; Sjoelander, K.; and Haussler, D. 1994. Hidden Markov model in computational biology. Applications to protein modelling. Journal of Molecular Biology 235:1501-1531.
-
(1994)
Journal of Molecular Biology
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I. S.3
Sjoelander, K.4
Haussler, D.5
-
16
-
-
0003680739
-
An introduction to Kolmogorov complexity and its applications
-
New York: Springer-Verlag
-
Li, M., and Vitanyi, P. 1993. An introduction to Kolmogorov complexity and its applications. Texts and monographs in computer science. New York: Springer-Verlag.
-
(1993)
Texts and monographs in computer science
-
-
Li, M.1
Vitanyi, P.2
-
18
-
-
0029144601
-
Gibbs motif sampling: Detection of bacterial outer membraneprotein repeats
-
Neuwald,A. F.; Liu, J. S.; and Lawrence, C. E. 1995. Gibbs motif sampling: Detection of bacterial outer membraneprotein repeats. Protein Science 4:1618-1632.
-
(1995)
Protein Science
, vol.4
, pp. 1618-1632
-
-
Neuwald, A. F.1
Liu, J. S.2
Lawrence, C. E.3
-
19
-
-
0018015137
-
Modeling by the shortest data description
-
Rissanen, J. 1978. Modeling by the shortest data description. Automatica-J.IFAC 14:465-471.
-
(1978)
Automatica-J.IFAC
, vol.14
, pp. 465-471
-
-
Rissanen, J.1
-
20
-
-
67649101173
-
Multiple sequence comparison: a peptide matching approach
-
Galil, Z., and Ukkonen, E., eds., Springer
-
Sagot, M.-F.; Viari, A.; and Soldano, H. 1995. Multiple sequence comparison: a peptide matching approach. In Galil, Z., and Ukkonen, E., eds., Proc. of 6th Annual Symposium, CPM(Lecture Notes in Computer Science 937), 366-385. Springer.
-
(1995)
Proc. of 6th Annual Symposium, CPM(Lecture Notes in Computer Science 937)
, pp. 366-385
-
-
Sagot, M.-F.1
Viari, A.2
Soldano, H.3
-
21
-
-
0023375195
-
The neighbour-joining method: a new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
22
-
-
0028174103
-
Identification of sequencemotifs froma set of proteins with related function
-
Saqi, M.A. S., and Sternberg, M.J. E. 1994. Identification of sequencemotifs froma set of proteins with related function. Protein Engineering 7(2):165-171.
-
(1994)
Protein Engineering
, vol.7
, Issue.2
, pp. 165-171
-
-
Saqi, M.A. S.1
Sternberg, M.J. E.2
-
23
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
Smith, R. F., and Smith, T. F. 1990. Automatic generation of primary sequence patterns from sets of related protein sequences. In Proc. Natl. Acad. Sci. USA, 118-122.
-
(1990)
Proc. Natl. Acad. Sci. USA
, pp. 118-122
-
-
Smith, R. F.1
Smith, T. F.2
-
25
-
-
0029186105
-
BONSAI garden: parallel knowledge discovery system for amino acid sequences
-
M.; ; ; ; ; and, C. Rawlings et al., ed., MenloPark, California: AAAIPress
-
T. Shoudai, M.; Lape, M.; Miyano, S.; Shinohara, A.; Okazaki, T.; Arikawa, S.; Uchida, T.; Shimozono,S.; Shinohara, T.; and Kuhara, S. 1995. BONSAI garden: parallel knowledge discovery system for amino acid sequences. In C. Rawlings et al., ed., Proc. of Third International Conference on Intelligent Systems for Molecualar Biology, 359-366. MenloPark, California: AAAIPress.
-
(1995)
Proc. of Third International Conference on Intelligent Systems for Molecualar Biology
, pp. 359-366
-
-
Shoudai, T.1
Lape, M.2
Miyano, S.3
Shinohara, A.4
Okazaki, T.5
Arikawa, S.6
Uchida, T.7
Shimozono, S.8
Shinohara, T.9
Kuhara, S.10
-
26
-
-
0027968068
-
Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson,J.; Higgins, D. G.; and Gibson, T. J. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:46.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 46
-
-
Thompson, J.1
Higgins, D. G.2
Gibson, T. J.3
-
27
-
-
0029185456
-
Identificaion of protein motifs using conserved amino acid properties and partitioning techniques
-
C. Rawlingset al., ed., MenloPark, California: AAAIPress
-
Wu,T. D., and Brutlag, D. L. 1995. Identificaion of protein motifs using conserved amino acid properties and partitioning techniques. In C. Rawlingset al., ed., Proc. of Third International Conferenceon Intelligent Systems for Molecular Biology, 402-410. MenloPark, California: AAAIPress.
-
(1995)
Proc. of Third International Conferenceon Intelligent Systems for Molecular Biology
, pp. 402-410
-
-
Wu, T. D.1
Brutlag, D. L.2
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