Distance measurements in nucleic acids using windowless dipolar recoupling solid state NMR

Solid State Nuclear Magnetic Resonance

Volumn 7, Issue 3, 1996, Pages 211-228

  Mehta, M A ^a   Gregory, D M ^a   Kiihne, S ^a   Mitchell, D J ^a   Hatcher, M E ^a   Shiels, J C ^a   Drobny, G P ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Dipolar recoupling; NMR; Nucleic acids

Indexed keywords

CHEMICAL BONDS; DNA SEQUENCES; MOLECULAR ORIENTATION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUMERICAL METHODS; X RAY CRYSTALLOGRAPHY;

DNA DODECAMERS; WINDOWLESS HOMONUCLEAR DIPOLAR RECOUPLING PULSE SEQUENCE (DRAWS);

NUCLEIC ACIDS;

CARBON; DNA; NUCLEIC ACID;

ARTICLE; CHEMISTRY; COMPUTER SIMULATION; CONFORMATION; MATHEMATICAL COMPUTING; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; X RAY CRYSTALLOGRAPHY;

CARBON ISOTOPES; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; DNA; MAGNETIC RESONANCE SPECTROSCOPY; MATHEMATICAL COMPUTING; NUCLEIC ACID CONFORMATION; NUCLEIC ACIDS;

EID: 0030300098     PISSN: 09262040     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0926-2040(96)01267-2     Document Type: Article

References (54)

1. W. Saenger, Principles of Nucleic Acid Structure, Springer-Verlag, New York, 1984.
2. R.R. Ernst, G. Bodenhausen and A. Wokaun, Principles of Nuclear Magnetic Resonance in One and Two Dimensions, Oxford University Press, Oxford, 1994.
3. C.A.G. Haasnoot, F.A.A.M. de Leeuw, H.P.M. de Leeuw and C. Altona, Org. Magn. Reson., 15 (1981) 43.
4. C.J. Hartzell, T.K. Pratum and G.P. Drobny, J. Chem. Phys., 87 (1987) 4324.
5. K.W. Zilm and D.M. Grant, J. Am. Chem. Soc., 103 (1981) 2913.
6. G.S. Harbison, J. Herzfeld and R.G. Griffin, J. Am. Chem. Soc.. 103 (1981) 4752.
7. E.R. Andrew, A. Bradbury and R.G. Eades, Nature, 162 (1959) 1659.
8. I.J. Lowe, Phys. Rev. Lett., 2 (1959) 285.
9. M.M. Maricq and J.S. Waugh, J. Chem. Phys., 70 (1979) 3300.
10. E.R. Andrew, A. Bradbury, R.G. Eades and V.T. Wynn, Phys. Lett., 4 (1963) 99.
11. M.G. Columbo, B.H. Meier and R.R. Ernst, Chem. Phys. Lett., 146 (1988) 189.
12. A. Kubo and C.A. McDowell, J. Chem. Soc., Faraday Trans., 84 (1988) 3713.
13. Z.-H. Gan and D.M. Grant, Mol. Phys., 67 (1989) 1419.
14. D.P. Raleigh, M.H. Levitt and R.G. Griffin, Chem. Phys. Lett., 146 (1988) 71.
15. A.E. McDermott, F. Creuzet, R.G. Griffin, L.E. Zawadzke, Q.Z. Ye and C.T. Walsh, Biochemistry, 29 (1990) 5767.
16. O.B. Peerson and S.O. Smith, Concepts Magn. Reson., 5 (1993) 303.
17. T. Gullion and S. Vega, Chem. Phys. Lett., 194 (1992) 423.
18. D.K. Sodickson, M.H. Levitt, S. Vega and R.G. Griffin, J. Chem. Phys., 98 (1993) 6742.
19. R. Tycko and G. Dabbagh, Chem. Phys. Lett., 173 (1990) 461.
20. R. Tycko and S.O. Smith, J. Chem. Phys., 98 (1993) 932.
21. C.A. Klug, W. Zhu, M.E. Merritt and J. Schaefer, J. Magn. Reson., 109 (1994) 134.
22. B.Q. Sun, P.R. Costa, D. Kocisko, R.T. Lansbury and R.G. Griffin, J. Chem. Phys., 102 (1995) 702.
23. T. Fujiwara, A. Ramamoorthy, K. Nagayama, K. Hioka and T. Fujito, Chem. Phys. Lett., 212 (1993) 81.
24. M. Baldus, M. Tomaselli, B.H. Meier and R.R. Ernst, Chem. Phys. Lett., 230 (1994) 329.
25. J. Gottwald, D.E. Demco, R. Graf and H.W. Speiss, Chem. Phys. Lett., 243 (1995) 314.
26. D.M. Gregory, D.J. Mitchell, J.A. Stringer, S. Kiihne, J.C. Shiels, J. Callahan, M.A. Mehta and G.P. Drobny, Chem. Phys. Lett., 246 (1995) 654.
27. R. Wing, H. Drew, T. Takano, C. Broka, S. Tanaka, K. Itakura and R.E. Dickerson, Nature, 287 (1980) 755.
28. H.R. Drew, R.M. Wing, T. Takano, C. Broka, S. Tanaka, K. Itakura and R.E. Dickerson, Proc. Natl. Acad. Sci. U.S.A., 78 (1981) 217.
29. M. Mehring, High Resolution NMR in Solids, 2nd Edn., Springer, New York, 1983.
30. U. Haeberlen, High Resolution NMR in Solids, Selective Averaging, Academic Press, New York, 1976.
31. H. Liu, S.J. Glaser and G.P. Drobny, J. Chem. Phys., 93 (1990) 7543.
32. O.W. Sørensen, G.W. Eich, M.H. Levitt, G. Bodenhausen and R.R. Ernst, Prog. NMR Spectrosc., 16 (1983) 163.
33. D.P. Raleigh, F. Creuzet, S.K. Das Gupta, M.H. Levitt and R.G. Griffin, J. Am. Chem. Soc., 111 (1989) 4502.
34. T.M. Alam and G.P. Drobny, Biochemistry, 29 (1990) 3421.
35. C. Redwine and T.W. Whaley, J. Labelled Compd. Radiopharm., 16 (1979) 315.
36. J.R. Williamson and S.J. Boxer, Nucleic Acids Chem., 16 (1988) 1529.
37. C.C. Bhat, Synth. Proc. Nucleic Acid Chem., 1 (1968) 512.
38. A. Kintanar, W.C. Huang, D.C. Schindele, D.E. Wemmer and G.P. Drobny, Biochemistry, 28 (1989) 282.
39. The Handbook of Chemistry and Physics, 64th Edn., R.C. Weast (Ed.), Chemical Rubber Company, Boca Raton, FL, 1983, p. E-42.
40. S.R. Hartmann and E.L. Hahn, Phys. Rev., 128 (1962) 2042.
41. A. Pines, M.G. Gibby and J.S. Waugh, J. Chem. Phys., 59 (1973) 569.
42. J. Schaefer and E.O. Stejskal, J. Am. Chem. Soc., 100 (1976) 1031.
43. D.P. Burum, M. Linder and R.R. Ernst, J. Magn. Reson., 43 (1981) 463.
44. MATLAB, V2.4c, from The MathWorks Inc, 24 Prime Park Way, Natick, MA, 01760.
45. H. Geen, M.H. Levitt and G. Bodenhausen, Chem. Phys. Lett., 200 (1992) 350.
46. J. Herzfeld and A.E. Berger, J. Chem. Phys., 73 (1980) 6021.
47. D.W. Young, P. Tollin and H.R. Wilson, Acta Crystallogr., Sect. B, 25 (1969) 1423.
48. L. Zhu, Ph.D. Thesis, University of Washington, 1994.
49. D.M. Gregory, unpublished data, 1995.
50. S. Kiihne, unpublished data, 1995.
51. H.R. Drew, S. Samson and R.E. Dickerson, Proc. Natl. Acad. Sci. U.S.A., 79 (1982) 4040-4044.
52. L. van den Berg, Arch. Biochem. Biophys., 81 (1959) 305-315.
53. L. van den Berg and D. Rose, Arch. Biochem. Biophys., 81 (1959) 319-329.
54. S.R. Holbrook and S.H. Kim, J. Mol. Biol., 173 (1984) 361-388.