Use of sequence-specific tri-block copolymers to determine the helix-forming tendencies of amino acids

Biopolymers

Volumn 39, Issue 4, 1996, Pages 531-536

  Rothwarf, David M ^a   Davenport, V Gary ^a   Shi, Pu Tau ^a   Peng, Jin Lin ^a   Scheraga, Harold A ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AROMATIC COMPOUNDS; BLOCK COPOLYMERS; MOLECULAR DYNAMICS; PHASE TRANSITIONS; POLYPEPTIDES;

ALANINE; CIRCULAR DICHROISM SPECTRUM; HELIX COIL TRANSITION; PEPTIDE; TRIBLOCK COPOLYMERS;

AMINO ACIDS;

AMINO ACID; COPOLYMER;

AMINO ACID SEQUENCE; ARTICLE; CIRCULAR DICHROISM; PEPTIDE SYNTHESIS; PROTEIN ANALYSIS; PROTEIN PURIFICATION;

EID: 0030271190     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-0282(199610)39:4<531::aid-bip5>3.0.co;2-y     Document Type: Article

References (32)

1. Horovitz, A., Matthews, J. M & Fersht, A. R. (1992) J. Mol. Biol. 227, 560-568.
2. Blaber, M., Zhang, X.-J., Lindstrom, J. D., Pepiot, S. D., Baase, W. A. & Matthews, B. W. (1994) J. Mol. Biol. 235, 600-624.
3. Wojcik, J., Altmann, K.-H. & Scheraga, H. A. (1990) Biopolymers 30, 121-134.
4. Lyu, P. C., Liff, M. I., Marky, L. A. & Kallenbach, N. R. (1990) Science 250, 669-673.
5. O'Neil, K. T. & DeGrado, W. F. (1990) Science 250, 646-651.
6. Park, S.-H., Shalongo, W. & Stellwagen, E. (1993) Biochemistry 32, 7048-7053.
7. Chakrabartty, A., Kortemme, T. & Baldwin, R. L. (1994) Protein Sci. 3, 843-852.
8. Baldwin, R. L. (1995) Biophys. Chem. 55, 127-135.
9. Kemp, D. S., Boyd, J. G. & Muendel, C. C. (1991) Nature 352, 451-454.
10. Kemp, D. S., Allen, T. J. & Oslick, S. L. (1995) J. Am. Chem. Soc. 117, 6641-6657.
11. Groebke, K., Renold, P., Tsang, K. Y., Allen, T. J., McClure, K. F. & Kemp, D. S. (1996) Proc. Natl. Acad. Sci., 93, 4025-4029.
12. Zimm, B. H. & Bragg, J. K. (1959) J. Chem. Phys. 31, 526-535.
13. Lifson, S. & Roig, A. (1961) J. Chem. Phys. 34, 1963-1974.
14. Vásquez, M. & Scheraga. H. A. (1988) Biopolymers 27, 41-58.
15. Munoz, V. & Serrano, L. (1994) Nature Struct. Biol. 1, 399-409.
16. Scholtz, J. M., Qian, H., Robbins, V. H. & Baldwin, R. L. (1993) Biochemistry 32, 9668-9676.
17. Harper, E. T. & Rose, G. D. (1993) Biochemistry 32, 7605-7609.
18. Doig, A. J. & Baldwin, R. L. (1995) Protein Sci. 4, 1325-1336.
19. Chakrabartty, A. & Baldwin, R. L. (1995) Adv. Protein Chem. 46, 141-177.
20. Bixon, M., Scheraga, H. A. & Lifson, S. (1963) Biopolymers 1, 419-429.
21. Padmanabhan, S., York, E. J., Gera, L., Stewart, J. M. & Baldwin, R. L. (1994) Biochemistry 33, 8604-8609.
22. Vila, J., Williams, R. L., Grant, J. A., Wójcik, J. & Scheraga, H. A. (1992) Proc. Natl. Acad. Sci. 89, 7821-7825.
23. Holtzer, A. (1994) J. Am. Chem. Soc. 116, 10837-10838.
24. Gratzer, W. B. & Doty, P. (1963) J. Am. Chem. Soc. 85, 1193-1197.
25. Ingwall, R. T., Scheraga, H. A., Lotan, N., Berger, A. & Katchalski, E. (1968) Biopolymers 6, 331-368.
26. Takahashi, S., Kim, E.-H., Hibino, T. & Ooi, T. (1989) Biopolymers 28, 995-1009.
27. Ihara, S., Ooi, T. & Takahashi, S. (1982) Biopolymers 21, 131-145.
28. Scholtz, J. M., York, E. J., Stewart, J. M. & Baldwin, R. L. (1991) J. Am. Chem. Soc. 113, 5102-5104.
29. Adler, M. & Scheraga, H. A. (1988) Biochemistry 27, 2471-2480.
30. Shalongo, W., Dugad, L. & Stellwagen, E. (1994) J. Am. Chem. Soc. 116, 8288-8293.
31. Bevington, P. R. (1969) Data Reduction and Error Analysis for the Physical Sciences, McGraw-Hill, New York. chap. 5.
32. Scholtz, J. M., Qian, H., York, E. J., Stewart, J. M. & Baldwin, R. L. (1991) Biopolymers 31, 1463-1470,