Minisatellite DNA variation and stock identification of coho salmon

Journal of Fish Biology

Volumn 49, Issue 3, 1996, Pages 411-429

  Beacham, T D ^a   Miller, K M ^a   Withler, R E ^a  

^a PACIFIC BIOLOGICAL STATION   (Canada)

Author keywords

fisheries management; molecular genetics; population structure

Indexed keywords

COHO SALMON; MOLECULAR GENETICS; POPULATION STRUCTURE; STOCK IDENTIFICATION;

CANADA, BRITISH COLUMBIA; RUSSIAN FEDERATION, KAMCHATKA; USA, ALASKA;

ONCORHYNCHUS KISUTCH;

EID: 0030222751     PISSN: 00221112     EISSN: None     Source Type: Journal    
DOI: 10.1006/jfbi.1996.0169     Document Type: Article

References (38)

1. Aro, K. V. & Shepard, M. P. (1967). Salmon of the North Pacific Ocean. Part IV. Spawning populations of North Pacific salmon. 5. Pacific salmon in Canada. International North Pacific Fisheries Commission Bulletin 23, 225-327.
2. Bartley, D. M., Bentley, B., Olin, P. G. & Gall, G. A. E. (1992). Population genetic structure of coho salmon (Oncorhynchus kisutch) in California. California Fish and Game 78, 88-104.
3. Beacham, T. D., Gould, A. P., Withler, R. E., Murray, C. B. & Barner, L. W. (1987). Biochemical genetic survey and stock identification of chum salmon (Oncorhynchus keta) in British Columbia. Canadian Journal of Fisheries and Aquatic Sciences 44, 1702-1713.
4. Beacham, T. D., Withler, R. E. & Gould, A. P. (1985). Biochemical genetic stock identification of chum salmon (Oncorhynchus keta) in southern British Columbia. Canadian Journal of Fisheries and Aquatic Sciences 42, 437-448.
5. Beacham, T. D., Withler, R. E. & Wood, C. C. (1995). Stock identification of sockeye salmon by means of minisatellite DNA variation. North American Journal of Fisheries Management 15, 249-265.
6. Beacham, T. D., Withler, R. E. & Stevens, T. A. (1996). Stock identification of chinook salmon using minisatellite DNA variation. Canadian Journal of Fisheries and Aquatic Sciences 53, 380-394.
7. Bentzen, P. & Wright, J. M. (1993). Nucleotide sequence and evolutionary conservation of a minisatellite variable number tandem repeat cloned from Atlantic salmon, Salmo solar. Genome 36, 271-277.
8. Bernatchez, L., Guyomard, R. & Bonhomme, F. 1992. DNA sequence variation of the mitochondrial control region among geographically and morphologically remote European brown trout Salmo trutta populations. Molecular Ecology 1, 161-173.
9. Felsenstein, J. (1980). PHYLIP Manual Version 3.3. Berkeley: University Herbarium, University of California.
10. Fournier, D. A., Beacham, T. D., Riddell, B. E. & Busack, C. A. (1984). Estimating stock composition in mixed stock fisheries using morphometric, meristic, and electrophoretic characteristics. Canadian Journal of Fisheries and Aquatic Sciences 41, 400-408.
11. Galbraith, D. A., Boag, P. T., Gibbs, H. L. & White, B. N. (1991). Sizing bands on autoradiograms: a study of precision for scoring DNA fragments. Electrophoresis 12, 210-220.
12. Galvin, P., McKinnell, S., Taggart, J. B., Ferguson, A., O'Farrell, M. & Cross, T. F. (1995). Genetic stock identification of Atlantic salmon (Salmo solar L.) using single locus minisatellite DNA profiles. Journal of Fish Biology 47 (Suppl. A), 186-199.
13. Gill, P., Sullivan, K. & Werrett, D. J. (1990). The analysis of hypervariable DNA profiles: problems associated with the objective determination of the probability of a match. Human Genetics 85, 75-79.
14. Jarman, A. P. & Wells, R. A. (1989). Hypervariable minisatellites: recombinators or innocent bystanders. Trends in Genetics 5, 367-371.
15. Lessios, H. A. (1992). Testing electrophoretic data for agreement with Hardy-Weinberg expectations. Marine Biology 112, 517-523.
16. Millar, R. B. (1990). Comparison of methods for estimating mixed stock fishery composition. Canadian Journal of Fisheries and Aquatic Sciences 47, 2235-2241.
17. Miller, K. M., Withler, R. E. & Beacham, T. D. (1996). Stock identification of coho salmon (Oncorhynchus kisutch) using minisatellite DNA variation. Canadian Journal of Fisheries and Aquatic Sciences 53, 181-195.
18. Milner, G. B. (1993). Isozyme variation of coho salmon (Oncorhynchus kisutch) and its potential to estimate stock composition of mixed-stock fisheries. In Proceedings of the Coho Salmon Workshop, Nanaimo, B.C., May 26-28, 1992 (Berg, L. & Delaney, P. W., eds), pp. 182-192. Vancouver B.C.: Department of Fisheries and Oceans.
19. Noppinger, K., Duncan, G., Ferraro, D., Watson, S. & Ban, J. (1992). Evaluation of DNA probe removal from nylon membrane. Bio Techniques 13, 572-575.
20. Palva, T. K., Lehvaslaiho, H. & Palva, E. T. (1989). Identification of anadromous and non-anadromous salmon stocks in Finland by mitochondrial DNA analysis. Aquaculture 81, 237-244.
21. Pimentel, R. A. (1979). Morphometrics: the multivariate analysis of biological data. Dubuque, IA, U.S.A.: Kendall/Hunt Publishing Company.
22. Prodöhl, P. A., Taggart, J. B. & Ferguson, A. (1994). Single locus inheritance and joint segregation analysis of minisatellite (VNTR) DNA loci in brown trout (Salmo trutta L.) Heredity 73, 556-566.
23. Ricker, W. E. (1972). Heredity and environmental factors affecting certain salmonid populations. In The Stock Concept of Pacific Salmon (Simon, R. S. & Larkin, P. A., eds), pp. 19-60. H. R. MacMillan Lectures in Fisheries, University of British Columbia, Vancouver, B.C.
24. 2 and the problem of small sample sizes. Molecular Biology and Evolution 6, 539-545.
25. SAS Institute Inc. (1989). SAS/STAT Users Guide, Version 6, 4th edition. Volume 1. Cary, NC: SAS Institute Inc.
26. Stevens, T. A., Withler, R. E., Goh, S. H. & Beacham, T. D. (1993). A new multilocus probe for DNA fingerprinting in chinook salmon (Oncorhynchus tshawytscha), and comparisons with a single-locus probe. Canadian Journal of Fisheries and Aquatic Sciences 50, 1559-1567.
27. Taggart, J. B. & Ferguson, A. (1990). Hypervariable single locus DNA probes for the Atlantic salmon, Salmo salar L. Journal of Fish Biology 37, 991-993.
28. Taggart, J. B., Prodöhl, P. A. & Ferguson, A. (1995). Genetic markers for Atlantic salmon (Salmo salar L.): single locus inheritance and joint segregation analysis of minisatellite (VNTR) DNA loci. Animal Genetics 26, 13-20.
29. Taylor, E. B. (1995). Genetic variation of minisatellite DNA loci among North Pacific populations of steelhead and rainbow trout (Oncorhynchus mykiss). Journal of Heredity 86, 354-363.
30. Taylor, E. B., Beacham, T. D. & Kaeriyama, M. (1994). Population structure and identification of North Pacific Ocean chum salmon (Oncorhynchus keta) revealed by an analysis of minisatellite DNA variation. Canadian Journal of Fisheries and Aquatic Sciences 51, 1430-1442.
31. Taylor, E. B., Foote, C. J. & Wood, C. C. (1996). Molecular genetic evidence for parallel life history evolution within a Pacific salmon (sockeye salmon and kokanee, Oncorhynchus nerka). Evolution, 50, 401-416.
32. Utter, F. M., Allendorf, F. W. & Hodgins, H. O. (1973). Genetic variability and relationships in Pacific salmon and related trout based on protein variations. Systematic Zoology 22, 257-270.
33. Utter, F. M., Milner, G., Stahl, G. & Teel, D. (1989). Genetic population structure of chinook salmon, Oncorhynchus tshawytscha, in the Pacific northwest. Fisheries Bulletin (U.S.) 87, 239-264.
34. Wehrhahn, C. F. & Powell, R. (1987). Electrophoretic variation, regional differences, and gene flow in the coho salmon (Oncorhynchus kisutch) of southern British Columbia. Canadian Journal of Fisheries and Aquatic Sciences 44, 822-831.
35. Wilmot, R. L., Everett, R. J., Spearman, W. J., Baccus, R., Varnavaskaya, N. V. & Putivkin, S. V. (1994). Genetic stock structure of western Alaska chum salmon and a comparison with Russian Far East stocks. Canadian Journal of Fisheries and Aquatic Sciences 51 (Suppl. 1), 84-94.
36. Wilson, G. M., Thomas, W. K. & Beckenbach, A. T. (1987). Mitochondrial DNA analysis of Pacific northwest populations of Oncorhynchus tshawytscha. Canadian Journal of Fisheries and Aquatic Sciences 44, 1301-1305.
37. Winans, G. A., Aebersold, P. A., Urawa, S. & Varnavaskaya, N. V. (1994). Determining continent-of-origin of chum salmon (Oncorhynchus keta) using genetic stock identification techniques: Status of allozyme baseline in Asia. Canadian Journal of Fisheries and Aquatic Sciences 51 (Suppl. 1), 95-113.
38. Wood, C. C., Rutherford, D. T. & McKinnell, S. (1989). Identification of sockeye salmon (Oncorhynchus nerka) stocks in mixed-stock fisheries in British Columbia and Southeast Alaska using biological markers. Canadian Journal of Fisheries and Aquatic Sciences 46, 2108-2120.