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Volumn 26, Issue 3, 1996, Pages 279-285

Physical stabilization and confocal microscopy of bacteria on roots using 16S rRNA targeted, fluorescent-labeled oligonucleotide probes

Author keywords

in situ hybridization; laser scanning confocal microscopy; rhizosphere

Indexed keywords

OLIGONUCLEOTIDE; RNA 16S;

EID: 0030220521     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/0167-7012(96)00923-2     Document Type: Article
Times cited : (25)

References (31)
  • 1
    • 0000040324 scopus 로고
    • Biological control of soilborne plant pathogens in the rhizosphere with bacteria
    • [1] Weller, D.M. (1988) Biological control of soilborne plant pathogens in the rhizosphere with bacteria. Annu. Rev. Phytopathol, 26, 379-407.
    • (1988) Annu. Rev. Phytopathol , vol.26 , pp. 379-407
    • Weller, D.M.1
  • 2
    • 0001255620 scopus 로고
    • Effect of Azospillum brasilense inoculation on root morphology and respiration in tomato seedlings
    • [2] Hadas, R. and Okon, Y. (1987) Effect of Azospillum brasilense inoculation on root morphology and respiration in tomato seedlings. Biol. Fertil. Soils 5, 241-247.
    • (1987) Biol. Fertil. Soils , vol.5 , pp. 241-247
    • Hadas, R.1    Okon, Y.2
  • 3
    • 0001307577 scopus 로고
    • Growth enhancement and developmental modifications of in vitro grown potato (Solanum tuberosum ssp.) as affected by a nonfluorescent Pseudomonas sp.
    • [3] Frommel, M.I., Novak, J. and Lazarovits, G. (1991) Growth enhancement and developmental modifications of in vitro grown potato (Solanum tuberosum ssp.) as affected by a nonfluorescent Pseudomonas sp. Plant Physiol. 96, 928-936.
    • (1991) Plant Physiol. , vol.96 , pp. 928-936
    • Frommel, M.I.1    Novak, J.2    Lazarovits, G.3
  • 4
    • 0018170512 scopus 로고
    • Use of fluorochromes for direct observation of microorganisms associated with roots
    • [4] Van Vuurde, J.W.L. and Elenbaas, P.F.M. (1978) Use of fluorochromes for direct observation of microorganisms associated with roots. Can. J. Microbiol. 24, 1272-1275.
    • (1978) Can. J. Microbiol. , vol.24 , pp. 1272-1275
    • Van Vuurde, J.W.L.1    Elenbaas, P.F.M.2
  • 5
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • [5] Porter, K.G. and Feig, Y.S. (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25, 943-948.
    • (1980) Limnol. Oceanogr. , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 7
    • 0022907596 scopus 로고
    • Confocal light microscopy
    • [7] Wilson, T. (1986) Confocal light microscopy. Ann. New York Acad. Sci. 438, 416-426.
    • (1986) Ann. New York Acad. Sci. , vol.438 , pp. 416-426
    • Wilson, T.1
  • 8
    • 0025877270 scopus 로고
    • Confocal fluorescence microscopy and three-dimensional reconstruction
    • [8] Wright, S.J. and Schatten, G. (1991) Confocal fluorescence microscopy and three-dimensional reconstruction. J. Electron Microsc. Tech. 18, 2-10.
    • (1991) J. Electron Microsc. Tech. , vol.18 , pp. 2-10
    • Wright, S.J.1    Schatten, G.2
  • 9
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • [9] Amann, R.I., Krumholz, L. and Stahl, D.A. (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172, 762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 10
    • 0026677380 scopus 로고
    • Identification and in situ detection of individual bacterial cells
    • [10] Amann, R., Ludwig, W. and Schleifer, K.-H. (1992) Identification and in situ detection of individual bacterial cells. FEMS Microbiol. Lett. 100, 45-50.
    • (1992) FEMS Microbiol. Lett. , vol.100 , pp. 45-50
    • Amann, R.1    Ludwig, W.2    Schleifer, K.-H.3
  • 11
    • 0026581202 scopus 로고
    • Detection of microorganisms in soil after in situ hybridization with rRNA targeted fluorescently labeled oligonucleotides
    • [11] Hahn, D., Amann, R.I., Ludwig, W., Akkermans, A.D.L. and Schleifer, K.H. (1992) Detection of microorganisms in soil after in situ hybridization with rRNA targeted fluorescently labeled oligonucleotides. J. Gen. Microbiol. 138, 879-887.
    • (1992) J. Gen. Microbiol. , vol.138 , pp. 879-887
    • Hahn, D.1    Amann, R.I.2    Ludwig, W.3    Akkermans, A.D.L.4    Schleifer, K.H.5
  • 12
    • 0027264175 scopus 로고
    • Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
    • [12] Poulsen, L.K., Ballard, G. and Stahl, D.A. (1993) Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol. 59, 1354-1360.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1354-1360
    • Poulsen, L.K.1    Ballard, G.2    Stahl, D.A.3
  • 13
    • 0028201422 scopus 로고
    • The use of small subunit rRNA sequences to unravel the relationships between anaerobic ciliates and their methanogen endosymbionts
    • [13] Embley, T.M. and Finlay, B.J. (1994) The use of small subunit rRNA sequences to unravel the relationships between anaerobic ciliates and their methanogen endosymbionts. Microbiology 140, 225-235.
    • (1994) Microbiology , vol.140 , pp. 225-235
    • Embley, T.M.1    Finlay, B.J.2
  • 14
    • 0028906668 scopus 로고
    • In situ localization of Azospirillum brasilense in the rhizosphere of wheat with fluorescently labeled, rRNA targeted oligonucleotide probes and scanning confocal laser microscopy
    • [14] Assmus, B., Hutzler, P., Kirchoff, G., Amann, R., Lawrence, J.R. and Hartman, A. (1995) In situ localization of Azospirillum brasilense in the rhizosphere of wheat with fluorescently labeled, rRNA targeted oligonucleotide probes and scanning confocal laser microscopy. Appl. Environ. Microbiol. 61, 1013-1019.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1013-1019
    • Assmus, B.1    Hutzler, P.2    Kirchoff, G.3    Amann, R.4    Lawrence, J.R.5    Hartman, A.6
  • 15
    • 0028929072 scopus 로고
    • Fully automated determination of soil bacterium numbers, cell volumes, and frequencies of dividing cells by confocal laser scanning microscopy and image analysis
    • [15] Bloem, J., Veninga, M. and Shepherd, J. (1995) Fully automated determination of soil bacterium numbers, cell volumes, and frequencies of dividing cells by confocal laser scanning microscopy and image analysis. Appl. Environ. Microbiol. 61, 926-936.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 926-936
    • Bloem, J.1    Veninga, M.2    Shepherd, J.3
  • 16
    • 0002089774 scopus 로고
    • Ribosomal RNA based studies of natural microbial diversity and ecology
    • (Eds. T. Hattori, Y. Ishida, Y. Maruyama, R. Morita and A. Uchidad). Japan Scientific Societies Press, Tokyo
    • [16] Stahl, D.A., Devereux, R., Amann, R.I., Flesher, B., Lin, C. and Stromley, J. (1989) Ribosomal RNA based studies of natural microbial diversity and ecology. In: Recent Advances in Microbial Ecology (Eds. T. Hattori, Y. Ishida, Y. Maruyama, R. Morita and A. Uchidad). Japan Scientific Societies Press, Tokyo, pp. 669-673.
    • (1989) Recent Advances in Microbial Ecology , pp. 669-673
    • Stahl, D.A.1    Devereux, R.2    Amann, R.I.3    Flesher, B.4    Lin, C.5    Stromley, J.6
  • 17
    • 0025294528 scopus 로고
    • Combination of 16s rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • [17] Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R. and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 18
    • 0027996397 scopus 로고
    • Permeabilisation and fluorescent 16S rRNA probing of mycolic acid containing actinomycetes
    • [18] Macnaughton, S.J., Embley, T.M. and O'Donnell, A.G. (1994) Permeabilisation and fluorescent 16S rRNA probing of mycolic acid containing actinomycetes. Microbiology 140, 2859-2865.
    • (1994) Microbiology , vol.140 , pp. 2859-2865
    • Macnaughton, S.J.1    Embley, T.M.2    O'Donnell, A.G.3
  • 19
  • 20
    • 0021235670 scopus 로고
    • Reclassification of Corynebacterium fascians (Tilford) Dowson in the genus Rhodococcus, as Rhodococcus fascians comb. nov.
    • [20] Goodfellow, M. (1984) Reclassification of Corynebacterium fascians (Tilford) Dowson in the genus Rhodococcus, as Rhodococcus fascians comb. nov. Syst. Appl. Microbiol, 5, 225-229.
    • (1984) Syst. Appl. Microbiol , vol.5 , pp. 225-229
    • Goodfellow, M.1
  • 21
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes in bacterial systematics
    • (Eds. E. Stackenbrandt and M. Goodfellow). Wiley, Chichester
    • [21] Stahl, D.A. and Amann, R.I. (1991) Development and application of nucleic acid probes in bacterial systematics. In: Sequencing and Hybridization Techniques in Bacterial Systematics (Eds. E. Stackenbrandt and M. Goodfellow). Wiley, Chichester, pp. 205-208.
    • (1991) Sequencing and Hybridization Techniques in Bacterial Systematics , pp. 205-208
    • Stahl, D.A.1    Amann, R.I.2
  • 22
    • 0003253048 scopus 로고
    • Fixation, dehydration, and embedding of biological specimens
    • (Ed. A.M. Glauert). North-Holland, Amsterdam
    • [22] Glauert, A.M. (1974) Fixation, dehydration, and embedding of biological specimens. In: Practical Methods in Electron Microscopy, Vol. 3 (Ed. A.M. Glauert). North-Holland, Amsterdam, pp. 1-207.
    • (1974) Practical Methods in Electron Microscopy , vol.3 , pp. 1-207
    • Glauert, A.M.1
  • 23
    • 0002654775 scopus 로고
    • In situ analysis of soil components of biological origin
    • (Eds. E.A. Paul and J.N. Ladd). Marcel Deklcer, New York
    • [23] Foster, R.C. and Martin, J.K. (1981) In situ analysis of soil components of biological origin. In: Soil Biochemistry, Vol. 5 (Eds. E.A. Paul and J.N. Ladd). Marcel Deklcer, New York, pp. 75-110.
    • (1981) Soil Biochemistry , vol.5 , pp. 75-110
    • Foster, R.C.1    Martin, J.K.2
  • 24
    • 34250088572 scopus 로고
    • Microenvironments of soil microorganisms
    • [24] Foster, R.C. (1988) Microenvironments of soil microorganisms. Biol. Fertil. Soils 6, 189-203.
    • (1988) Biol. Fertil. Soils , vol.6 , pp. 189-203
    • Foster, R.C.1
  • 26
    • 0027712475 scopus 로고
    • Multi-color laser scanning confocal immunofluorescence microscopy: Practical applications and limitations
    • (Ed. B. Matsumoto). Academic Press, London
    • [26] Brelje, T.C., Wessendorf, M.W. and Sorenson, R.L. (1993) Multi-color laser scanning confocal immunofluorescence microscopy: practical applications and limitations. In: Methods in Cell Biology, Vol. 38 (Cell Applications of Confocal Microscopy) (Ed. B. Matsumoto). Academic Press, London, pp. 97-188.
    • (1993) Methods in Cell Biology, Vol. 38 (Cell Applications of Confocal Microscopy) , vol.38 , pp. 97-188
    • Brelje, T.C.1    Wessendorf, M.W.2    Sorenson, R.L.3
  • 27
    • 0002377603 scopus 로고
    • Plant root exudates and their influence upon soil microorganisms
    • (Eds. K.F. Baker and W.C. Snyder). University of California Press, Los Angeles, CA
    • [27] Rovira, A.D. (1965) Plant root exudates and their influence upon soil microorganisms. In: Ecology of Soil-borne Plant Pathogens (Eds. K.F. Baker and W.C. Snyder). University of California Press, Los Angeles, CA, pp. 170-184.
    • (1965) Ecology of Soil-Borne Plant Pathogens , pp. 170-184
    • Rovira, A.D.1
  • 28
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA-based probes for the identification of single microbial cells
    • [28] DeLong, E.F., Wickham, G.S. and Pace, N.R. (1989) Phylogenetic stains: ribosomal RNA-based probes for the identification of single microbial cells. Science 243, 1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 29
    • 0001662981 scopus 로고
    • Microbial colonization of plant roots
    • [29] Bowen, G.D. and Rovira, A.D. (1976) Microbial colonization of plant roots. Annu. Rev. Phytopathol. 14, 1121-1144.
    • (1976) Annu. Rev. Phytopathol. , vol.14 , pp. 1121-1144
    • Bowen, G.D.1    Rovira, A.D.2
  • 31
    • 0000536409 scopus 로고
    • Fasciation of sweet peas caused by phytomonas fascians n. sp
    • [31] Tilford, P.E. (1936) Fasciation of sweet peas caused by phytomonas fascians n. sp. J. Agric. Res. 53, 383-394.
    • (1936) J. Agric. Res. , vol.53 , pp. 383-394
    • Tilford, P.E.1


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