Conformational and stacking properties of 3′-5′ and 2′-5′ linked oligoribonucleotides studied by CD

Biopolymers

Volumn 39, Issue 2, 1996, Pages 173-182

  Sawai, H ^a   Kuroda, K ^a   Seki, J ^a   Ozaki, H ^a  

^a GUNMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHARACTERIZATION; CHEMICAL ANALYSIS; CHEMICAL BONDS; CONFORMATIONS; IONS; MANGANESE; NUCLEIC ACIDS; TEMPERATURE;

CHAIN LENGTH; OLIGONUCLEOTIDES; OLIGORIBOADENYLATES; OLIGORIBOURIDYLATES; STACKING PROPERTIES;

BIOPOLYMERS;

MAGNESIUM; MANGANESE; OLIGORIBONUCLEOTIDE;

ARTICLE; CIRCULAR DICHROISM; HYDROPHOBICITY; MOLECULAR INTERACTION; RNA STRUCTURE; STRUCTURE ANALYSIS; TEMPERATURE;

CIRCULAR DICHROISM; NUCLEIC ACID CONFORMATION; OLIGORIBONUCLEOTIDES;

EID: 0030220390     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-0282(199608)39:2<173::aid-bip5>3.0.co;2-m     Document Type: Article

References (49)

1. Orgel, L. E. & Lohrmann, R. (1973) Acc. Chem. Res. 7, 368-377.
2. Sawai, H. (1976) J. Am. Chem. Soc. 98, 7037-7039.
3. Lohrmannn, R. & Orgel, L. E. (1978) Tetrahedron 34, 853-855.
4. Sawai, H. (1988) J. Mol. Evol. 27, 181-186.
5. Sawai, H., Kuroda, K. & Hojo, T. (1989) Bull. Chem. Soc. Jpn. 62, 2018-2023.
6. Sawai, H., Higa, K. & Kuroda, K. (1992) J. Chem. Soc. Perkin Trans. I 505-508.
7. Ferris, J. P. & Ertem, G. (1992) Science 257, 1387-1389.
8. Ferris, J. P. & Ertem, G. (1993) J. Am. Chem. Soc. 115, 12270-12275.
9. Kawamura, K. & Ferris, J. P. (1994) J. Am. Chem. Soc. 116, 7564-7572.
10. Inoue, T. & Orgel, L. E. (1981) J. Am. Chem. Soc. 103, 7666-7667.
11. Inoue, T. & Orgel, L. E. (1983) Science 219, 859-862.
12. Usher, D. A. & McHall, A. H. (1976) Proc. Natl. Acad. Sci. USA 73, 1149-1153.
13. Dhringa, M. M. & Sarma, R. H. (1978) Nature 272, 798-801.
14. Sarma, R. H. & Dhringa, M. M. (1979) Nature 278, 582.
15. Kierzek, R., He, L. & Turner, D. H. (1992) Nucleic Acids Res. 20, 1685-1690.
16. Lengyel, P. (1982) Ann. Rev. Biochem. 51, 251-282.
17. Johnston, M. I. & Torrence, P. F. (1984) in Interferon, Vol. 3, Mechanism of Production and Action, Friedman, R. M., Ed., Elsevier Science Publishers, New York, pp. 189-298.
18. Kondo, S., Holmes, H. M., Stempel, L. M. & Ts'O, P. O. P. (1970)Biochemistry 9, 3479-3498.
19. Giannaris, P. G. & Damha, M. J. (1993) Nucleic Acids Res. 21, 4742-4749.
20. Brahms, J., Maurizot, J. C. & Michelson, A. M. (1967) J. Mol. Biol. 25, 481-495.
21. Dootnbos, J., den Hartog, J. A. J., van Boom, J. H. & Altona, C. (1981) Eur. J. Biochem., 116, 403-412.
22. Gapalakrishnan, V., Ghadage, R. S. & Ganesh, N. N. (1991) Biochem. Biophys. Res. Commun. 180, 1251-1257.
23. Alder, A. J., Grossman, L. & Fasman, G. D. (1968) Biochemistry 7, 3836-3843.
24. Sawai, H. (1983) Nucleic Acids Symp. Ser. 12, 189-192.
25. Hirao, I., Ishido, Y. & Miura, K. (1983) Nucleic Acids Symp. Ser. 12, 193-196.
26. Markham, A. F., Porter, R. A., Gait, M. J., Sheppard, R. C. & Kerr, I. M. (1979) Nucleic Acids Res. 6, 2569-2582.
27. Brahms, J., Michelson, A. M. & van Holde, K. E. (1966) J. Mol. Biol. 15, 467-488.
28. Srivasan, A. R. & Olson, K. W. (1986) Nucleic Acids Res. 14, 5461-5479.
29. Krishnan, R., & Seshadri, T. P. (1993) J. Biomol. Struct. Dynam. 10, 727-745.
30. Krishnan, R., Seshadri, T. P. & Viswamitra, M. A. (1991) Nucleic Acids Res. 19, 379-384.
31. Parthasarathy, R., Malik, M. & Freidey, S. M. (1982) Proc. Natl. Acad. Sci. USA 79, 7292-7296.
32. Einspahr, H., Cook, W. J. & Bugg, C. E. (1981) Biochemistry 20, 5788-5794.
33. Kuninaka, A., Fujimoto, M. & Yoshino, H. (1975) Agricul. Biol. Chem. 39, 597-603.
34. Mukai, J. & Soeda, E. (1967) Biochim. Biophys. Acta 138, 1-9.
35. Sawai, H. (1989) J. Chromatogr. 481, 201-210.
36. Sawai, H. (1981) J. Mol. Evol. 17, 48-51.
37. Bush, C. A. & Brahms, J. (1973) in Physico-Chemical Properties of Nucleic Acids, Duchesne, J., Ed., Academic Press, New York, pp. 147-186.
38. Osthoorn, C. S. M., Bostelaer, L. J., de Rooij, J. F. M., van Boom, J. H. & Altona, C. (1981) Eur. J. Biochem. 115, 309-321.
39. Stein, A. & Crothers, D. M. (1976) Biochemistry 15, 157-160.
40. Bina-Steun, M. & Stein, A. (1976) Biochemistry 15, 3912-3917.
41. Danchin, A. & Gueron, M. (1970) Eur. J. Biochem. 16, 532-536.
42. Schreier, A. A. & Schimmel, P. R. (1974) J. Mol. Biol. 86, 601-620.
43. Saenger, W. (1984) in Principles of Nucleic Acid Structure, Springer-Verlag, New York, pp. 201-219.
44. Sawai, H. & Shinomiya, T. (1982) J. Biochem. 92, 1723-1730.
45. Johnston, M. I., Imai, J., Lesiak, K., Jacobsen, H., Sawai, H. & Torrence, P. F. (1985) Biochemistry 24, 4710-4718.
46. Gilbert, W. (1986) Nature 319, 618.
47. Joyce, G. F. & Orgel, L. E. (1993) in The RNA World, Gesteland, R. F. & Atkins, J. F., Eds., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 1-25.
48. Been, M. D. & Czech, T. R. (1988) Science 239, 1412-1416.
49. Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N. & Altman, S. (1983) Cell 35, 849-857.