New chemistry for the study of multiprotein complexes: The six- histidine tag as a receptor for a protein crosslinking reagent

Chemistry and Biology

Volumn 3, Issue 7, 1996, Pages 551-559

  Fancy, David A ^a   Melcher, Karsten ^b   Johnston, Stephen Albert ^b   Kodadek, Thomas ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

crosslinking; multiprotein complex; protein engineering; transcription

Indexed keywords

EID: 0030198874     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(96)90146-5     Document Type: Article

References (30)

1. Dervan, P.B. (1986). Design of sequence-specific DNA-binding molecules. Science 232, 464-471.
2. Oakley, M.G. & Dervan, P.B. (1990). Structural motif of the GCN4 DNA binding domain characterized by affinity cleaving. Science 248, 847-850.
3. Chen, L., et al., & Verdine, G.L. (1995). Only one of the two DNA-bound orientations of AP-1 found in solution cooperates with NFATp. Curr. Biol. 5, 882-889.
4. Ermacora, M.R., Delfino, J.M., Cuenoud, B., Schepartz, A. & Fox, R.O. (1992). Conformation-dependent cleavage of staphylococcal nuclease with a disulfide-linked iron chelate. Proc. Natl. Acad. Sci. USA 89, 6383-6387.
5. Mazzarelli, J.M., Ermacora, M.R., Fox, R.O. & Grindley, N.D.F. (1993). Mapping interactions between the catalytic domain of resolvase and its DNA substrate using cysteine-coupled EDTA-iron. Biochemistry 32, 2979-2986.
6. Rudnick, D.A., Rocque, W.J., McWherter, C.A., Toth, M.V., Jackson-Machelski, E. & Gordon, J.I. (1993). Use of photoactivatable peptide substrates of Saccharomyces cerevisiae myristoyl-CoA:protein N-myristoyltransferase (Nmt1 p) to characterize a myristoyl-CoA-Nmt1 p-peptide ternary complex and to provide evidence for an ordered reaction mechanism. Proc. Natl. Acad. Sci. USA 90, 1087-1091.
7. Ghaim, J.B., Greiner, D.P., Meares, C.F. & Gennis, R.B. (1995). Proximity mapping the surface of a membrane protein using an artificial protease: demonstration that the quinone-binding domain of subunit I is near the N-terminal region of subunit II in cytochrome bd. Biochemistry 34, 11311-11317.
8. Chen, Y., Ebright, Y.W. & Ebright, R.H. (1994). Identification of the target of a transcription activator protein by protein-protein photocrosslinking. Science 265, 90-92.
9. Kim, Y.-L., Bjorklund, S., Li, Y., Sayre, M. H. & Kornberg, R. D. (1994). A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77, 599-608.
10. Koleske, A.J. & Young, R.A. (1994). An RNA polymerase II holoenzyme responsive to activators. Nature 368, 466-469.
11. Brown, K.C., Yang, S.-H. & Kodadek, T. (1995). Highly specific oxidative crosslinking of proteins mediated by a nickel-peptide complex. Biochemistry 34, 4733-4739.
12. Mack, D.P., Iverson, B.L. & Dervan, P.B. (1988). Design and chemical synthesis of a sequence-specific DNA-cleaving protein. J. Am. Chem. Soc. 110, 7572-7574.
13. Cuenoud, B., Tarasow, T.M. & Schepartz, A. (1992). A new strategy for directed protein cleavage. Tetrahedron Lett. 33, 895-898.
14. Nagaoka, M., Hagihara, M., Kuwahara, J. & Sugiura, Y. (1994). A novel zinc-finger-based DNA cutter: biosynthetic design and highly selective DNA cleavage. J. Am. Chem. Soc. 116, 4085-4086.
15. Kodadek, T., Gan, D.C. & Stemke-Hale, K. (1989). The phage T4 uvsY recombination protein stabilizes presynaptic filaments. J. Biol. Chem. 264, 16451-16457.
16. Shinohara, A., Ogawa, H. & Ogawa, T. (1992). Rad51 protein involved in repair and recombination in S. cerevisiae is a RecA-like protein. Cell 69, 457-470.
17. Ogawa, T., Yu, X., Shinohara, A. & Egelman, E.H. (1993). Similarity of the yeast RAD51 filament to the bacterial RecA filament. Science 259, 1896-1899.
18. McKnight, S.L. (1996). Transcription revisited: a commentary on the 1995 Cold Spring Harbor Laboratory meeting, 'Mechanisms of Eukaryotic Transcription' Genes Dev. 10, 367-381.
19. Johnston, M. (1987). A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae. Microbiol. Rev. 51, 458-476.
20. Melcher, K. & Johnston, S. (1995). GAL4 interacts with TBP and coactivators. Mol. Cell. Biol. 15, 2839-2848.
21. Kerr, L.D., et al., & Verma, I.M. (1993). Association between protooncoprotein Rel and TATA-binding protein mediates transcriptional activation by NF-κB. Nature 365, 412-419.
22. Truant, R., Xiao, H., Ingles, C.J. & Greenblatt, J. (1993). Direct interaction between the transcriptional activation domain of human p53 and the TATA box-binding protein. J. Biol. Chem. 268, 2284-2287.
23. Stringer, K.F., Ingles, C.J. & Greenblatt, J. (1990). Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFID. Nature 345, 783-786.
24. Parks, T.D., Leuther, K.K., Howard, E.D., Johnston, S.A. & Dougherty, W.G. (1994). Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase. Anal. Biochem. 216, 413-417.
25. Lim, K., Ho, J.X., Keeling, K., Gilliland, G.L., Ruker, F. & Carter, D.C. (1994). Three-dimensional structure of Schistosoma japonium GST fused with a six amino acid conserved neutralizing epitope of gp41 from HIV. Protein Sci. 3, 2233-2244.
26. Triezenberg, S.T., Kingsbury, R.C. & McKnight, S.L. (1988). Functional dissection of VP16, the transactivator of herpes simplex virus immediate early gene expression. Genes Dev. 2, 718-729.
27. Taggert, A.K.P. & Pugh, B.F. (1996). Dimerization of TFIID when not bound to DNA. Science 272, 1331-1333.
28. Coleman, R.A., Taggart, A.K.P., Benjamin, L.R. & Pugh, B.F. (1995). Dimerization of the TATA-binding protein. J. Biol. Chem. 270, 13842-13849.
29. Hoopes, B.C., LeBlanc, J.F. & Hawley, D. (1992). Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J. Biol. Chem. 267, 11539-11547.
30. Schagger, H. & von Jagow, G. (1987). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166, 368-379.