Spectral Analysis of Microtubule Assembly Dynamics

AIChE Journal

Volumn 42, Issue 5, 1996, Pages 1434-1442

  Odde, David J ^a,c   Buettner, Helen M ^a   Cassimeris, Lynne ^b  

^a the State University of New Jersey   (United States)

^b LEHIGH UNIVERSITY   (United States)

^c Michigan Technological University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; CELLS; CHARACTERIZATION; COMPUTER SIMULATION; ERRORS; GROWTH (MATERIALS); MATHEMATICAL MODELS; ONCOLOGY; OSCILLATIONS; SHRINKAGE; SPECTRUM ANALYSIS; STABILITY;

CYTOPLASM; CYTOSKELETON; FUKARYOTIC CELL; MICROTUBULE ASSEMBLY DYNAMICS; MICROTUBULE DYNAMIC INSTABILITY; STOCHASTIC SWITCHING;

BIOPOLYMERS;

EID: 0030145326     PISSN: 00011541     EISSN: None     Source Type: Journal    
DOI: 10.1002/aic.690420524     Document Type: Article

References (47)

1. Alberts, B., D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell, 3rd ed., Garland Publ., New York (1994).
2. Bak, P., and K. Chen, "Self-Organized Criticality," Sci. Amer., 46 (Jan., 1991).
3. Bak, P., C. Tang, and K. Wiesenfeld, "Self-Organized Criticality," Phys. Rev. A, 38, 364 (1988).
4. Bayley, P. M., M. J. Schilstra, and S. R. Martin, "A Simple Formulation of Microtubule Dynamics: Quantitative Implications of the Dynamic Instability of Microtubule Populations in Vivo and in Vitro," J. Cell Sci., 93, 241 (1989).
5. Bayley, P. M., M. J. Schilstra, and S. R. Martin, "Microtubule Dynamic Instability: Numerical Simulation of Microtubule Transition Properties using a Lateral Cap Model," J. Cell Sci., 95, 33 (1990).
6. Caplow, M., "Microtubule Dynamics," Curr. Opin. Cell Biol., 4, 58 (1992).
7. Cassimeris, L., "Regulation of Microtubule Dynamic Instability," Cell Motil. Cytoskel., 26, 275 (1993).
8. Cassimeris, L., N. K. Pryer, and E. D. Salmon, "Real-Time Observations of Microtubule Dynamic Instability in Living Cells," J. Cell Biol, 107, 2223 (1988).
9. Chen, Y., and T. L. Hill, "Use of Monte Carlo Calculations in the Study of Microtubule Subunit Kinetics," Proc. Nat. Acad. Sci. U.S.A., 80, 7520 (1983).
10. Chen, Y., and T. L. Hill, "Monte Carlo Study of the GTP Cap in a Five-Start Helix Model of a Microtubule," Proc. Nat. Acad. Sci. U.S.A., 82, 1131 (1985).
11. Co, T. B., and B. E. Ydstie, "System Identification using Modulating Functions and Fast Fourier Transforms," Comput. Chem. Eng., 14, 1051 (1990).
12. Daniels, M. P., "Colchicine Inhibition of Nerve Fiber Formation in Vitro," J. Cell Biol., 53, 164 (1972).
13. DeFelice, L. J., Introduction to Membrane Noise, Plenum Press, New York (1981).
14. Dogterom, M., and S. Leibler, "Physical Aspects of the Growth and Regulation of Microtubule Structures," Phys. Rev. Lett., 70, 1347 (1993).
15. Drechsel, D. N., A. A. Hyman, M. H. Cobb, and M. W. Kirschner, "Modulation of the Dynamic Instability of Tubulin Assembly by the Microtubule-Associated Protein Tau," Mol. Biol. Cell, 3, 1141 (1992).
16. Dunn, G. A. and A. F. Brown, "A Unified Approach to Analyzing Cell Motility," J. Cell Sci. Suppl., 8, 81 (1987).
17. Erickson, H. P., and E. T. O'Brien, "Microtubule Dynamic Instability and GTP Hydrolysis," Ann. Rev. Biophys. Biomol. Struct., 21, 145 (1992).
18. Gildersleeve, R. F., A. R. Cross, K. E. Cullen, A. P. Fagen, and R. C. Williams, Jr., "Microtubules Grow and Shorten at Intrinsically Variable Rates," J. Biol. Chem., 267, 7995 (1992).
19. Gliksman, N. R., R. V. Skibbens, and E. D. Salmon, "How the Transition Frequencies of Microtubule Dynamic Instability (Nucleation, Catastrophe, and Rescue) Regulate Microtubule Dynamics in Interphase and Mitosis: Analysis using a Monte Carlo Computer Simulation," Mol. Biol. Cell, 4, 1035 (1993).
20. Hill, T. L., "Introductory Analysis of the GTP-Cap Phase Change Kinetics at the End of a Microtubule," Proc. Nat. Acad. Sci. U.S.A., 81, 6728 (1984).
21. Hill, T. L., Linear Aggregation Theory in Cell Biology, Springer-Verlag, New York (1987).
22. Horio, T., and H. Hotani, "Visualization of the Dynamic Instability of Individual Microtubules," Nature, 321, 605 (1986).
23. Kauffman, S. A., The Origins of Order, Oxford Univ. Press, New York (1993).
24. Letourneau, P. C., and A. H. Ressler, "Inhibition of Neurite Initiation and Growth by Taxol," J. Cell Biol., 98, 1355 (1984).
25. Martin, S. R., M. J. Schilstra, and P. M. Bayley, "Dynamic Instability of Microtubules: Monte Carlo Simulation and Application to Different Types of Microtubule Lattice," Biophys. J., 65, 578 (1993).
26. Mitchison, T. J., and M. W. Kirschner, "Dynamic Instability of Microtubule Growth," Nature, 312, 237 (1984).
27. Mitchison, T. J., and M. W. Kirschner, "Some Thoughts on the Partitioning of Tubulin Between Monomer and Polymer under Conditions of Dynamic Instability," Cell Biophys., 11, 35 (1987).
28. Odde, D. J., and H. M. Buettner, "Time Series Characterization of Simulated Microtubule Dynamics in the Nerve Growth Cone," Ann. Biomed. Eng., 23, 268 (1995).
29. Odde, D. J., L. Cassimeris, and H. M. Buettner, "Kinetics of Microtubule Catastrophe Assessed by Probabilistic Analysis," Biophys. J., 69, 796 (1995).
30. Partin, A. W., J. S. Schoeniger, J. L. Mohler, and D. S. Coffey, "Fourier Analysis of Cell Motility: Correlation of Motility with Metastatic Potential,"Proc. Nat. Acad. Sci. U.S.A., 86, 1254 (1989).
31. Press, W. H., S. A. Teukolsky, W. T. Vetterling, and B. P. Flannery, Numerical Recipes in Fortran, 2nd ed., Press Syndicate of the Univ. of Cambridge, New York (1992).
32. Pryer, N. K., R. A. Walker, V. P. Skeen, B. D. Bourns, M. F. Sobeiro, and E. D. Salmon, "Brain Microtubule-Associated Proteins Modulate Microtubule Dynamic Instability in Vitro," J. Cell Sci., 103, 965 (1992).
33. Sage, A. P., and J. C. Melsa, System Identification, Academic Press, San Diego (1971).
34. Salmon, T., R. A. Walker, and N. K. Pryer, "Video-Enhanced Differential Interference Contrast Light Microscopy," BioTechniques, 7, 624 (1989).
35. Sammak, P. J., and G. G. Borisy, "Direct Observation of Microtubule Dynamics in Living Cells," Nature, 332, 724 (1988).
36. Schnapp, B. J., "Viewing Single Microtubules by Video Light Microscopy," Meth. Enzymol., 134, 561 (1986).
37. Schulze, E., and M. Kirschner, "New Features of Microtubule Behaviour Observed in Vivo," Nature, 334, 356 (1988).
38. Shelden, E., and P. Wadsworth, "Observation and Quantification of Individual Microtubule Behavior in Vivo: Microtubule Dynamics are Cell-Type Specific," J. Cell Biol., 120, 935 (1993).
39. Tanaka, E., T. Ho, and M. W. Kirschner, "The Role of Microtubule Dynamics in Growth Cone Motility and Axonal Growth," J. Cell Biol., 128, 139 (1995).
40. Tanaka, E. M., and M. W. Kirschner, "Microtubule Behavior in the Growth Cones of Living Neurons During Axon Elongation," J. Cell Biol., 115, 345 (1991).
41. Toso, R. J., M. A. Jordan, K. W. Farrell, B. Matsumoto, and L. Wilson, "Kinetic Stabilization of Microtubule Dynamic Instability in Vitro by Vinblastine," Biochemistry, 32, 1285 (1993).
42. Tran, P. T., and E. D. Salmon, "Microtubule Dynamic Instability is a Three-State Process," Mol. Biol. Cell, 4, 165a (1993).
43. Vasquez, R. J., D. L. Gard, and L. Cassimeris, "XMAP from Xenopus Eggs Promotes Rapid Plus End Assembly of Microtubules and Rapid Microtubule Polymer Turnover," J. Cell Biol., 127, 985 (1994).
44. Verde, F., M. Dogterom, E. Stelzer, E. Karsenti, and S. Leibler, "Control of Microtubule Dynamics and Length by Cyclin A- and Cyclin B-Dependent Kinases in Xenopus Egg Extracts," J. Cell Biol., 118, 1097 (1992).
45. Walker, R. A., S. Inoue, and E. D. Salmon, "Asymmetric Behavior of Severed Microtubule Ends after Ultraviolet-Microbeam Irradiation of Individual Microtubules in Vitro," J. Cell Biol., 108, 931 (1989).
46. Walker, R. A., E. T. O'Brien, N. K. Pryer, M. F. Soboeiro, W. A. Voter, H. P. Erickson, and E. D. Salmon, "Dynamic Instability of Individual Microtubules Analyzed by Video Light Microscopy: Rate Constants and Transition Frequencies," J. Cell Biol., 107, 1437 (1988).
47. Yamada, K. M., B. S. Spooner, and N. K. Wessells, "Axon Growth: Roles of Microfilaments and Microtubules," Proc. Nat. Acad. Sci. U.S.A., 66, 1206 (1970).