Physical and gene maps of the unicellular cyanobacterium Synechococcus sp. strain PCC6301 genome

Plant Molecular Biology

Volumn 31, Issue 1, 1996, Pages 193-201

  Kaneko, Takakazu ^a,b   Matsubayashi, Tohru ^a,b   Sugita, Mamoru ^a   Sugiura, Masahiro ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b KAZUSA DNA RESEARCH INSTITUTE   (Japan)

Author keywords

gene map; genome; physical map; Synechococcus sp. strain PCC 6301

Indexed keywords

BACTERIA (MICROORGANISMS); SYNECHOCOCCUS; SYNECHOCOCCUS SP.; SYNECHOCOCCUS SP. PCC 6301;

EID: 0030130399     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00020621     Document Type: Article

References (59)

1. Bancroft I, Wolk CP, Oren EV: Physical and genetic maps of the genome of the heterocyst-forming cyanobacterium Anabaena sp. strain PCC 7120. J Bact 171: 5940-5948 (1989).
2. Banta AB, Haas ES, Brown JW, Pace NR: Sequence of the ribonuclease P RNA gene from the cyanobacterium Anacystis nidulans. Nucl Acids Res 20: 911 (1992).
3. Borbely G, Simonsits A: 3′-terminal conserved loops of 16S rRNAs from the cyanobacterium Synechococcus AN PCC 6301 and maize chloroplast differ only in two bases. Biochem Biophys Res Comm 101: 846-852 (1981).
4. Broedel SE Jr., Wolf RE Jr.: Genetic tagging, cloning, and sequence of the Synechococcus sp. strain PCC 7942 gene (gnd) encoding 6-phosphogluconate dehydrogenase. J Bact 172: 4023-4031 (1990).
5. Capuano V, Braux AS, Tandeau de Marsac N, Houmard J: The anchor polypeptide of cyanobacterial phycobilisomes. J Biol Chem 266: 7239-7247 (1991).
6. Chen JC, Meng BY, Fukuta M, Sugiura M: Nucleotide sequence of the psbI gene of the cyanobacterium, Anacystis nidulans 6301. Nucl Acids Res 18: 4017 (1990).
7. Chen X, Widger WR: Physical genome map of the unicellular cyanobacterium Synechococcus sp. strain PCC 7002. J Bact 175: 5106-5116 (1993).
8. Churin YN, Shalak IN, Borner T, Shestakov SV: Physical and genetic map of chromosome of the unicellular cyanobacterium Synechocystis sp. strain PCC 6803. J Bact 177: 3337-3343 (1995).
9. Delaney SF, Can NG: Temporal genetic mapping in the blue-green alga Anacystis nidulans using ethylmethane-sulphonate. J Gen Microbiol 88: 259-268 (1975).
10. Ellersiek U, Steinmüller K: Cloning and transcription analysis of the ndh(A-I-G-E) gene cluster and the ndhD gene of the cyanobacterium Synechocystis sp. PCC 6803. Plant Mol Biol 20: 1097-1110 (1992).
11. Fukuda M, Meng BY, Hayashida N, Sugiura M: Nucleotide sequence of the psbK gene of the cyanobacterium, Anacystis nidulans 6301. Nucl Acids Res 17: 7521 (1989).
12. Fukuta M, Wakasugi T, Sugiura M: Nucleotide sequence of a putative sensory kinase gene from the cyanobacterium, Anacystis nidulans 6301. DNA Res 1: 97-98 (1994).
13. Fukuzawa H, Suzuki E, Komukai Y, Miyachi S: A gene homologous to chloroplast carbonic anhydrase (icfA) is essential to photosynthetic carbon dioxide fixation by Synechococcus PCC 7942. Proc Natl Acad Sci USA 89: 4437-4441 (1992).
14. Golden SS, Stearns GW: Nucleotide sequence and transcript analysis of three photosystem II genes from the cyanobacterium Synechococcus sp. PCC7942. Gene 67: 85-96 (1988).
15. Golden SS, Brusslan J, Haselkorn R: Expression of a family of psbA genes encording a photosystem II polypeptide in the cyanobacterium Anacystis nidulans R2. EMBO J 5: 2789-2798 (1986).
16. Golden SS, Nalty MS, Cho DSC: Genetic relationship of two highly studied Synechococcus strain designated Anacystis nidulans. J Bact 171: 24-29 (1989).
17. Hassidim M, Schwarz R, Lieman-Hurwitz J, Marco E, Ronen-Tarazi M, Kaplan A: A cyanobacterial gene encoding peptidyl-prolyl cis-trans isomerase. Plant Physiol 100: 1982-1986 (1992).
18. Headman M, Janvier M, Rippka R, Stanier RY: Genome size of cyanobacteria. J Gen Microbiol 111: 73-85 (1979).
19. Huckle JW, Morby AP, Turner JS, Robinson NJ: Isolation of a prokaryotic metallothionein locus and analysis of transcriptional control by trace metal ions. Mol Microbiol 7: 177-187 (1993).
20. Katagiri F, Kodaki T, Fujita N, Izui K, Katsuki H: Nucleotide sequence of the phosphoenolpyruvate carboxylase gene of the cyanobacterium Anacystis nidulans. Gene 38: 265-269 (1985).
21. Kiel JAKW, Elgersma HSA, Beldman G, Vossen JPMJ, Venema G: Cloning and expression of the branching enzyme gene (g/gB) from the cyanobacterium Synechococcus sp. PCC 7942 in Escherichia coli. Gene 78: 9-17 (1989).
22. Kotani H, Kaneko T, Matsubayashi T, Sato S, Sugiura M, Tabata S: A physical map of the genome on a unicellular cyanobacterium Synechocystis sp. PCC6803. DNA Res 1: 303-307 (1995).
23. Kumano M, Tomioka N, Sugiura M: The complete nucleotide sequence of a 23 S rRNA gene from a blue-green alga, Anacystis nidulans. Gene 24: 219-225 (1993).
24. 23b. Liu SL, Hessel A, Sanderson KE: Genomic mapping with I-CeuI, an intron-encoded endonuclease specific for genes for ribosomal RNA, in Salmonella spp., Escherichia coli, and other bacteria. Proc Natl Acad Sci USA 90: 6874-6878 (1993).
25. Marco E, Ohad N, Schwarz R, Lieman-Hurwitz J, Gabay C, Kaplan A: High CO2 concentration alleviates the block in photosynthetic electron transport in an ndhAB-inactivated mutant of Synechococcus sp. PCC7942. Plant Physiol 101: 1047-1053 (1993).
26. Marshall P, Lemieux C: Cleavage pattern of the homing endonuclease encoded by the fifth intron in the chloroplast large subunit rRNA-encoding gene of Chlamydomonas eugamentos. Gene 104: 241-245 (1991).
27. 25b. Marshall P, Lemieux C: The I-CeuI endonuclease recognizes a sequence of 19 base pairs and preferentially cleaves the coding strand of the Chlamydomonas moewusii chloroplast large subunit rRNA gene. Nucl Acids Res 20: 6401-6407 (1992).
28. Meng BY, Shinozaki K, Sugiura M: Genes for the ribosomal proteins S12 and S7 and elongation factors EF-G and EF-Tu of the cyanobacterium, Anacystis nidulans: structural homology between 16S and S7 mRNA. Mol Gen Genet 216: 25-30 (1989).
29. Muller EGD, Buchanan BB: Thioredoxin is essential for photosynthetic growth. J Biol Chem 264: 4008-4014 (1989).
30. Nimura K, Yoshikawa H, Takahashi H: Identification of dnaK multigene family in Synechococcus sp. PCC 7942. Biochem Biophys Res Comm 201: 466-471 (1994).
31. Nimura K, Yoshikawa H, Takahashi H: Sequence analysis of the third dnaK homolog gene in Synechococcus sp. PCC7942. Biochem Biophys Res Comm 201: 848-854 (1994).
32. Omata T: Characterization of the downstream region of cmpA: identification of a gene cluster encoding a putative permease of the cyanobacterium Synechococcus PCC 7942. In: Murata N (ed) Research in Photosynthesis, vol. III, pp. 807-810. Kluwer Academic Publishers, Dordrecht (1992).
33. Omata T, Andriesse X, Hirano A: Identification and characterization of a gene cluster involved in nitrate transport in the cyanobacterium Synechococcus sp. PCC7942. Mol Gen Genet 236: 193-202 (1993).
34. Price GD, Howitt SM, Harrison K, Badger MR: Analysis of a genomic DNA region from the cyanobacterium Synechococcus sp. strain PCC 7942 involved in carboxysome assembly and function. J Bact 175: 2871-2879 (1993).
35. Rhiel E, Bryant DA: Nucleotide sequence of the psaE gene of cyanobacterium Synechococcus sp. PCC 6301. Plant Physiol 101: 701-702 (1993).
36. Rippka R, Deruelles J, Waterbury JB, Herdman M, Stainer RY: Genetic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111: 1-61 (1979).
37. Scanlan DJ, Newman J, Sebaihia M, Mann NH, Carr NG: Cloning and sequence analysis of the glucose-6-phosphate dehydrogenase gene from the cyanobacterium Synechococcus PCC 7942. Plant Mol Biol 19: 877-880 (1992).
38. Schwarz R, Lieman-Hurwitz J, Hassidim M, Kaplan A: Phenotypic complementation of high CO2-requiring mutants of the cyanobacterium Synechococcus sp. strain PCC 7942 by inosine 5′-monophosphate. Plant Physiol 100: 1987-1993 (1992).
39. Shestakov SV, Khyen NT: Evidence for genetic transformation in blue-green alga Anacystis nidulans. Mol Gen Genet 107: 372-375 (1970).
40. Shinozaki K, Yamada C, Takahata N, Sugiura M: Molecular cloning and sequence analysis of the cyanobacterial gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Proc Natl Acad Sci USA 80: 4050-4054 (1983).
41. Shinozaki K, Sugiura M: The gene for the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is located close to the gene for the large subunit in the cyanobacterium Anacystis nidulans 6301. Nucl Acids Res 20: 6957-6964 (1983).
42. Steinmüller K: Nucleotide sequence and expression of the ndbH gene of the cyanobacterium Synechocystis sp. PCC6803. Plant Mol Biol 18: 135-137 (1992).
43. Steinmüller K, Ley AC, Steinmetz AA, Sayer RT, Bogorad L: Characterization of the ndhC-psbG-ORF157/159 operon of maize plastid DNA and of the cyaobacterium Synechocystis sp. PCC6803. Mol Gen Genet 216: 60-69 (1989).
44. Steven SE Jr.: Cell stability and storage. Meth Enzymol 167: 122-125 (1988).
45. Leu and subunit L of NADH dehydrogenase from the cyanobacterium Synechococcus PCC 6301. DNA Res 2: 71-76 (1995).
46. Sugita M, Sugiura M: The existence of eukaryotic ribonucleoprotein consensus sequence-type RNA-binding proteins in a prokaryote, Synechococcus 6301. Nucl Acids Res 22: 25-31 (1994).
47. Sugita M, Sugita C, Sugiura M: Structure and expression of the gene encording ribosomal protein S1 from the cyanobacterium Synechococcus sp. strain PCC 6301: striking sequence similarity to the chloroplast ribosomal protein CS1. Mol Gen Genet 246: 142-147 (1995).
48. Sugiura M: The chloroplast genome. Plant Mol Biol 19: 149-168 (1992).
49. Szekeres M, Droux M, Buchanan BB: The ferredoxin-thioredoxin reductase variable subunit gene from Anacystis nidulans. J Bact 173: 1821-1823 (1991).
50. Tanaka K, Masuda S, Takahashi H: Multiple rpoO-related genes of cyanobacteria. Biosci Biotech Biochem 56: 1113-1117 (1992).
51. Tomioka N, Sugiura M: Nucleotide sequence of the 16S-23S spacer region in the rrnA operon from a blue green alga, Anacystis nidulans. Mol Gen Gent 193: 427-430 (1984).
52. Tomioka N, Sugiura M: The complete nucleotide sequence of a 16S ribosomal RNA gene from a blue-green alga, Anacystis nidulans. Mol Gen Genet 191: 46-50 (1983).
53. Tomioka N, Shinozaki K, Sugiura M: Molecular cloning and characterization of ribosomal RNA genes from a blue-green alga, Anacystis nidulans. Mol Gen Genet 184: 359-363 (1981).
54. Tsinoremas NF, Castets AM, Harrison MA, Allen JF, Tandeau de Marsac N: Photosynthetic electron transport controls nitrogen assimilation in cyanobacteria by means of posttranslational modification of the glnB gene product. Proc Natl Acad Sci USA 88: 4565-4569 (1991).
55. Tsinoremas NF, Kutach AK, Strayer CA, Golden SS: Efficient gene transfer in Synechococcus sp. strain PCC 7942 and PCC6301 by interspecies conjugation and chromosomal recombination. J Bact 176: 6764-6768 (1994).
56. Vermaas WF, Williams JG, Arntzen CJ: Sequencing and modification of psbB, the gene encoding the CP-47 protein of photosystem II, in the cyanobacterium Synechocystis 6803. Plant Mol Biol 8: 317-326 (1987).
57. Webb R, Reddy KJ, Sherman LA: Regulation and sequence of the Synechococcus sp. strain PCC 7942 groESL operon, encoding a cyanobacterial chaperonin. J Bact 172: 5079-5088 (1990).
58. Webb R, Troyan T, Sherman D, Sherman LA: MapA, an iron-regulated, cytoplasmic membrane protein in the cyanobacterium Synechococcus sp. strain PCC 7942. J Bact 176: 4906-4913 (1994).
59. Yasui A, Takao M, Oikawa A, Walsh CT, Eker APM: Cloning and characterization of a photolyase gene from the cyanobacterium Anacystis nidulans. Nucl Acids Res 16: 4447-4463 (1988).