Assignment of 19 porcine type I loci by somatic cell hybrid analysis detects new regions of conserved synteny between human and pig

Mammalian Genome

Volumn 7, Issue 4, 1996, Pages 275-279

  Rettenberger, G ^a   Bruch, J ^a   Fries, R ^b   Archibald, A L ^c   Hameister, H ^a  

^a UNIVERSITY OF ULM   (Germany)

^b ETH ZURICH   (Switzerland)

^c UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

SUIDAE; SUS SCROFA;

PRIMER DNA;

ANIMAL; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; GENETICS; HUMAN; HYBRID CELL; MOLECULAR GENETICS; MOUSE; NUCLEOTIDE SEQUENCE; SPECIES DIFFERENCE; SWINE;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CONSERVED SEQUENCE; DNA PRIMERS; HUMANS; HYBRID CELLS; MICE; MOLECULAR SEQUENCE DATA; SPECIES SPECIFICITY; SWINE;

EID: 0030122422     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s003359900082     Document Type: Article

References (37)

1. Andersson, L., Haley, C.S., Ellegren, H., Knott, S.A., Johansson, M., Andersson, K., Andersson-Eklund, L., Edfors-Lilja, I., Fredholm, M., Hansson, I., Håkansson, J., Lundström, K. (1994). Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263, 1771-1774.
2. Archibald, A.L., Brown, J.F., Couperwhite, S., McQueen, H.A., Nicholson, D., Coppieters, W., Van de Weghe, A., Stratil, A., Wintero, A.K., Fredholm, M., Larsen, N.J., Nielsen, V.H., Milan, D., Woloszyn, N., Robic, A., Dalens, M., Riquet, J., Gellin, J., Caritez, J.-C. Burgaud, G., Ollivier, L., Bidanel, J.-P., Vaiman, N., Renard, C., Geldermann, H., Davoli, R., Ruyter, D., Verstege, E.J.M., Groenen, M.A.M., Davies, W., Hoyheim, B., Keiserud, A., Andersson, L., Ellegren, H., Johansson, M., Marklund, L., Miller, J.R., Anderson Dear, D.V., Signer, E., Jeffreys, A.J., Moran, C., Le Tissier, P., Muladno, Rothschild, M.F., Tuggle, C.K., Vaske, D., Helm, J., Liu, H.-C., Rahman, A., Yu, T.-P., Larson, R.G., Schmitz, C.B. (1995). The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm. Genome 6, 157-175.
3. Brown, J.F., Hardge, T., Rettenberger, G., Archibald, A.L. (1994). Four new porcine polymorphic microsatellite loci (SOO32, SOO34, SOO36 & SOO37). Anim. Genet. 25, 365.
4. Chevalet, C., Corpet, F. (1986). Statistical decision rules concerning synteny or independence between markers. Cytogenet. Cell Genet. 43, 132-139.
5. Collins, F.S. (1992). Positional cloning: Let's not call it reverse anymore. Nature Genet. 1, 3-6.
6. Copeland, N.G., Jenkins, N.A., Gilbert, D.J., Eppig, J.T., Maltais, L.J., Miller, J.C., Dietrich, W.F., Weaver, A., Lincoln, S.E., Steen, R.G., Stein, L.D., Nadeau, J.H., Lander, E.S. (1993). A genetic linkage map of the mouse: current applications and future prospects. Science 262, 57-66.
7. Coppieters, W., Van de Weghe, A., Peelman, L., Depicker, A., Van Zeveren, A., Bouquet, Y. (1993). Characterization of porcine polymorphic microsatellite loci. Animal Genet. 24, 163-170.
8. Dietrich, W.F., Miller J.C., Steen, R.G., Merchant, M., Damron, D., Nahf, R., Gross, A., Joyce, D.C., Wessel, M., Dredge, R.D., Marquis, A., Stein, L.D., Goodman, N., Page, D.C., Lander, E.S. (1994). A genetic map of the mouse with 4006 simple sequence length polymorphisms. Nature Genet. 7, 220-245.
9. Dolf, G., Stranzinger, G. (1986). Pig gene mapping. Assignment of the genes for mannose phosphate isomerase (MPI) and nucleoside phosphorylase (NP) to chromosome no. 7. Genet. Sel. Evol. 18, 375-384.
10. Ellegren, H. (1993). Abundant (A)n(T)n mononucleotide repeats in the pig genome: linkage mapping of the porcine APOB, FSA, ACOX12, PEPN and RLN loci. Animal Genet. 24, 367-372.
11. Ellegren, H., Johansson, M., Chowdhary, B.P., Marklund, S., Ruyter, D., Marklund, L., Nielsen, P.B., Edfors-Lilja, I., Gustavsson, I., Juneja, R.K., Andersson, L. (1993). Assignment of 20 microsatellite markers to the porcine linkage map. Genomics 16, 431-439.
12. Fasman, K.H., Cuticchia, A.J., Kingsbury, D.T. (1994). The Human Genome Data Base anno 1994. Nucleic Acids Res. 22, 3462-3469.
13. Fredholm, M., Wintero, A.K., Christensen, K., Kristensen, B., Nielsen, P.B., Davies, W., Archibald, A. (1993). Characterization of 24 porcine (dA-dC)n-(dT-dG)n microsatellites, genotyping of unrelated animals from our breeds and linkage studies. Mamm. Genome 4, 187-192.
14. Haley, C.S., Archibald, A.L. (1992). Porcine genome analysis. In Genome Analysis, Vol. 4: Strategies for Physical Mapping, KE Davies, SM Tilghman, eds. (Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press), pp. 99-129.
15. Human Gene Mapping 11 (1991). Cytogenet. Cell Genet. 58, 1-2200.
16. Johansson, M., Ellegren, H., Andersson, L. (1995). Comparative mapping reveals extensive linkage conservation - but with gene order rearrangements - between the pig and the human genomes. Genomics 25, 682-690.
17. Leong, M., Lin, C.C., Ruth, R. (1983). Assignment of superoxide desmutase (SOD1) gene to chromosome Nr. 9 of domestic pig. Can. J. Genet. Cyto. 25, 233-238.
18. Levan, G., Szpirer, J., Szpirer, C., Klinga, K., Hanson, C., Islam, M.Q. (1991). The gene map of the Norway rat (Rattus norvegicus) and comparative mapping with mouse and man. Genomics 10, 699-718.
19. McKusick, V.A. (1992). Mendelian inheritance in man: the human gene map, 10th ed. (Baltimore: Johns Hopkins University Press).
20. McQueen, H.A., Yerle, M., Archibald, A.L. (1994). Anchorage of an unassigned linkage group to pig chromosome 10 using P1 clones. Mamm. Genome 5, 646-648.
21. Mitelmann, F., Kaneko, J., Trent, J. (1991). Report of the committee on chromosome changes in neoplasia. Cytogenet. Cell Genet 58, 1053-1079.
22. Nadeau, J.H. (1989). Maps of linkage and synteny homologies between mouse and man. Trends Genet. 5, 82-86.
23. O'Brien, S.J., Womack, J.E., Lyons, L.A., Moore, K.J., Jenkins, N.A., Copeland, N.G. (1993). Anchored reference loci for comparative mapping in mammals. Nature Genet. 3, 103-112.
24. Rettenberger, G., Fries, R., Enge, W., Scheit, K.H., Dolf, G., Hameister, H. (1994a). Establishment of a partially informative porcine somatic cell hybrid panel and assignment of the loci for transition protein 2 (TNP2) and protamine 1 (PRM1) to chromosome 3 and polyubiquitin (UBC) to chromosome 14. Genomics 21, 558-566.
25. Rettenberger, G., Burkhardt, E., Adham, I.M., Engel, W., Fries, R., Klett, C., Hameister, H. (1994b). Assignment of the Leydig-insulin like hormone to porcine chromosome 2q12-q13 by somatic cell hybrid analysis and fluorescence in situ hybridization. Mamm. Genome 5, 307-309.
26. Rettenberger, G., Fredholm, M., Fries, R. (1994c) Chromosomal assignment of porcine microsatellites by use of a somatic cell hybrid mapping panel. Anim. Genet. 25, 343-345.
27. Rettenberger, G., Klett, Ch., Zechner, U., Kunz, J., Vogel, W., Hameister, H. (1995). Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics 26, 372-378.
28. Rettenberger, G., Klett, Ch., Zechner, U., Bruch, J., Just, W., Vogel, W., Hameister, H. (1996). ZOO-FISH analysis: the cat and also the human karyotypes closely resemble the putative ancestral mammalian karyotype. Submitted.
29. Roth, H.R., Dolf, G., Stranzinger, G. (1987). Gene assignment by means of somatic cell hybrids, a new method for the analysis of data. Theor. Appl. Genet. 74, 42-48.
30. Scherthan, H., Cremer, T., Arnason, U., Weier, H.-U., Lima-de-Faria, A., Frönicke, L. (1994). Comparative chromosome painting discloses homologous segments in distantly related mammals. Nature Genet. 6, 342-347.
31. Searle, A.C., Peters, J., Lyon, M.F., Hall, J.G., Evans, E.P., Edwards, J.H., Buckle, V.J. (1989). Chromosome maps of man and mouse. IV. Ann. Hum. Genet. 53, 89-140.
32. Solinas-Toldo, S., Lengauer, C., Fries, R. (1995). Comparative genome map of human and cattle. Genomics 27, 489-496.
33. Threadgill, D.W., Womack, J.E. (1990). Syntenic conservation between humans and cattle. I. Human chromosome 9. Genomics 8, 22-28.
34. Wienberg, J., Stanyon, R., Jauch, A., Cremer, T. (1992). Homologies in human and Macaca fuscata chromosomes revealed by in situ suppression hybridization with human chromosome specific DNA libraries. Chromosoma 101, 265-270.
35. Yeldandi, A.V., Patel, Y.D., Liao, M., Kao, F.T., Rao, M.S., Reddy, J.K., Le Beau, M.M. (1992). Localization of the human urate oxidase gene (UOX) to 1p22. Cytogenet. Cell Genet. 61, 121-122.
36. Yerle, M., Lahbib-Mansais, Y., Mellink, C., Goureau, A., Pinton, P., Echard, G., Gellin, J., Zijlstra, C., De Haan, N., Bosma, A.A., Chowdhary, B.P., Gu, F., Gustavsson, I., Thomsen, P.D., Christensen, K., Rettenberger, G., Hameister, H., Schmitz, A., Chaput, B., Frelat, G. (1995). The PiGMaP consortium cytogenetic map of the domestic pig (Sus scrofa domestica). Mamm. Genome 6, 176-186.
37. Yunis, J.J., Prakash, O. (1982). The origin of man: a chromosomal pictorial legacy. Science 215, 1525-1530.