Detection of cytosine methylation and mapping of a gene influencing cytosine methylation in the genome of Citrus

Genome

Volumn 39, Issue 2, 1996, Pages 235-242

  Cai, Qinyin ^a,c   Guy, Charles L ^b   Moore, Gloria A ^b  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c CARLETON UNIVERSITY   (Canada)

Author keywords

Citrus grandis; Polymerase chain reaction; Poncirus trifoliata; RAPD; Restriction endonuclease

Indexed keywords

CITRUS; CITRUS MAXIMA; EUKARYOTA; PONCIRUS TRIFOLIATA;

CYTOSINE; PLANT DNA; PRIMER DNA;

ARTICLE; CHEMISTRY; CITRUS FRUIT; GENETICS; GENOME; METHYLATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING;

BASE SEQUENCE; CITRUS; CYTOSINE; DNA PRIMERS; DNA, PLANT; GENOME, PLANT; METHYLATION; MOLECULAR SEQUENCE DATA; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RESTRICTION MAPPING;

EID: 0030113203     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g96-032     Document Type: Article

References (41)

1. Bochardt, A., Hodal, L., Palmgren, G., Mattsson, O., and Okkels, F.T. 1992. DNA methylation is involved in maintenance of an unusual expression pattern of an introduced gene. Plant Physiol. 99: 409-414.
2. Boyes, J., and Bird, A. 1991. DNA methylation inhibits transcription indirectly via a methyl-CpG binding protein. Cell, 64: 1123-1134.
3. Burdon, R.H., and Adams, R.L.P. 1980. Eukaryotic DNA methylation. Trends Biochem. Sci. 5: 294-297.
4. Cai, Q., Guy, C.L., and Moore, G.A. 1994. Extension of the linkage map in citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold acclimation responsive loci. Theor. Appl. Genet. 89: 606-614.
5. Doerfler, W., Toth, M., Kochanek, S., Achten, S., Freisem-Rabien, U., Behn-Krappa, A., and Orend, G. 1990. Eukayotic DNA methylation: facts and problems. FEBS Lett. 268: 329-333.
6. Durham, R.E., Liou, P.C., Gmitter, F.G., Jr., and Moore, G.A. 1992. Linkage of restriction fragment length polymorphisms and isozymes in Citrus. Theor. Appl. Genet. 84: 39-48.
7. Ehrlich, M., and Wang, R.Y.-H. 1981. 5-Methylcytosine in eukaryotic DNA. Science (Washington, D.C.), 212: 1350-1354.
8. Foss, H.M., Roberts, C.J., Claeys, K.M., and Selker, E.U. 1993. Abnormal chromosome behavior in Neurospora mutants defective in DNA methylation. Science (Washington, D.C.), 262: 1737-1741.
9. Gruenbaum, Y., Naveh-Many, T., Cedar H., and Razin, A. 1981. Sequence specificity of methylation in higher plant DNA. Nature (London), 292: 860-862.
10. Hake, S., and Walbot, V. 1980. The genome of Zea mays, its organization and homology to related grasses. Chromosoma, 79: 251-270.
11. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., and Newburg, L. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1: 174-181.
12. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., Levine, A., Cantoni, G.L., and Razin, A. 1991. Inhibition of promoter activity by methylation: possible involvement of protein mediators. Proc. Natl. Acad. Sci. U.S.A. 88: 6515-6518.
13. Lewis, J., and Bird, A. 1991. DNA methylation and chromatin structure. FEBS Lett. 285: 155-159.
14. Li, E., Beard, C., and Jaenlsch, R. 1993. Role for DNA methylation in genomic imprinting. Nature (London), 366: 362-365.
15. Li, Q., Cai, Q., and Guy, C.L. 1994. A DNA extraction method for RAPD analysis from plants rich in soluble polysaccharides. Plant Mol. Biol. Rep. 12: 218-223.
16. Lincoln, S., Daly, M., and Lander, E. 1992. Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report. 3rd ed. Whitehead Institute, Cambridge, Mass., U.S.A.
17. Linn, F., Heidmann, I., Saedler, H., and Meyer, P. 1990. Epigenetic changes in the expression of the maize A1 gene in Petunia hybrida: role of numbers of integrated gene copies and state of methylation. Mol. Gen. Genet. 222: 329-336.
18. Lyons, S.M., and Schendel, P.F. 1984. Kinetics of methylation in Echerichia coli K-12. J. Bacteriol. 159: 421-423.
19. Matzke, M.A., Primig, M., Trnovsky, J., and Matzke, A.J.M. 1989. Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants. EMBO J. 8: 643-649.
20. McClelland, M., and Nelson, M. 1988. The effect of site-specific DNA methylation on restriction endonucleases and DNA modification methyltransferases - a review. Gene (Amst.), 74: 291-304.
21. McGhee, J.D., and Ginder, G.D. 1979. Specific DNA methylation sites in the vicinity of the chicken b globin genes. Nature (London), 280: 419-420.
22. Messeguer, R., Ganal, M.W., Steffens, J.C., and Tanksley, S.D. 1991. Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA. Plant Mol. Biol. 16: 753-770.
23. Nelson, M., and McClelland, M. 1989. Effect of site-specific methylation on DNA modification methyltransferases and restriction endonucleases. Nucleic Acids Res. (Suppl.) 17: 389-415.
24. Nelson, M., and McClelland, M. 1991. Site-specific methylation: effect on DNA modification methyltransferases and restriction endonucleases. Nucleic Acids Res. (Suppl.) 19: 2045-2071.
25. Otto, S.P., and Walbot, V. 1990. DNA methylation in eukaryotes: kinetics of demethylation and de novo methylation during the life cycle. Genetics, 124: 429-437.
26. Poulsen, G.B., Kahl, G., and Weising, K. 1993. Abundance and polymorphism of simple repetitive DNA sequences in Brassica napus L. Theor. Appl. Genet. 85: 994-1000.
27. Razin, A., and Cedar, H. 1991. DNA methylation and gene expression. Microbiol. Rev. 55: 451-458.
28. Razin, A., and Szyf, M. 1984. DNA methylation patterns: formation and function. Biochim. Biophys. Acta, 782: 331-342.
29. Razin, A., Cedar, H., and Riggs, A.D. 1984. Introduction and general overview. In DNA methylation, biochemistry and biological significance. Edited by A. Razin, H. Cedar, and A.D. Riggs. Springer-Verlag, New York. pp. 1-10.
30. Reich, N.O., Olsen, C., Osti, F., and Murphy, J. 1992. In vitro specificity of EcoRI DNA methyltransferase, J. Biol. Chem. 267: 15 802-15 807.
31. Renckens, S., Greve, H.D., Montagu, M.V., and Hernalsteens, J.P. 1992. Petunia plants escape from negative selection against a transgene by silencing the foreign DNA via methylation. Mol. Gen. Genet. 233: 53-64.
32. Russell, P.J., Rodland, K.D., Rachlin, E.M., and McCloskey, J.A. 1987. Differential DNA methylation during the vegetative life of Neurospora crassa. J. Bacteriol. 169: 2902-2905.
33. Selig, S., Ariel, M., Goitein, R., Marcus, M., and Cedar, H. 1988 Regulation of mouse satellite DNA replication time. EMBO J. 7: 419-426.
34. Silva, A.J., and White, R. 1988. Inheritance of allelic blueprints for methylation patterns. Cell, 54: 145-152.
35. Starratt, A.N. 1988. Methylation of DNA of maize and wheat grains during fumigation with methyl bromide, J. Agric. Food Chem. 36: 1035-1039.
36. Stöger, R., Kubicka, P., Liu, C.-G., Kafri, T., Razin, A., Cedar, H., and Barlow, D.P. 1993. Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal. Cell, 73: 61-71.
37. van der Ploeg, L.H.T., and Flavell, R.A. 1980 DNA methylation in the human gdb globin locus in erythroid and nonerythroid tissues. Cell, 19: 947-958.
38. Vongs, A., Kakutani, T., Martienssen, R.A., and Richards, E.J. 1993. Arabidopsis thaliana DNA methylation mutants. Science (Washington, D.C.), 260: 1926-1929.
39. Waalwijk, C., and Flavell, R.A. 1978. MspI, an isoschizomer of HpaII which cleaves both unmethylated and methylated HpaII sites. Nucleic Acids Res. 5: 3231-3236.
40. Welsh, J., and McClelland, M. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18: 7213-7218.
41. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., and Tingey, S.V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.