Molecular analysis of a RAPD marker (B20) reveals two microsatellites and differential mRNA expression in Penaeus vannamei

Molecular Marine Biology and Biotechnology

Volumn 5, Issue 1, 1996, Pages 71-83

  Garcia, Denise K ^a   Dhar, Arun K ^a   Alcivar Warren, Acacia ^a  

^a TUFTS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICROSATELLITE DNA;

ANIMAL; ARTICLE; BIOSYNTHESIS; CHEMISTRY; CROSS BREEDING; DNA SEQUENCE; FEMALE; GENE EXPRESSION REGULATION; GENETIC MARKER; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; MUSCLE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PENAEIDAE; PRENATAL DEVELOPMENT; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE ALIGNMENT; TAIL;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CROSSES, GENETIC; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENETIC MARKERS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; MUSCLES; OPEN READING FRAMES; PENAEIDAE; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TAIL;

ANIMALIA; CRUSTACEA; LITOPENAEUS VANNAMEI; PENAEUS;

EID: 0030111365     PISSN: 10536426     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. Alcivar, A.A., Hake, L.E., Millette, C.F., Trasler, J.M., and Hecht, N.B. (1989). Mitochondrial gene expression in male germ cells of the mouse. Dev Biol 135:263-271.
2. Alcivar-Warren, A.A., Garcia, D.K., Faggart, M.A., and Rich, C. (1994a). Evaluation of genetic diversity in Penaeus vannamei shrimp using molecular genetic techniques. USMSFP 10th Anniversary Review. GCRL Special Publication No. 1, pp. 27-34.
3. Alcivar-Warren, A.A., Faggart, M.A., Nevin, P.A., Rich, C., Wyban, J.A., Ebert, K.M., and Sweeney, J.N. (1994b). Mitochondrial DNA as a marker for genetic diversity of Penaeid shrimp: polymorphisms in the cytochrome oxidase I gene of SPF P. Vannamei shrimp. Proceedings of the World Aquaculture Society Meeting, Book of Abstracts. p.28. Jan. 14-18, New Orleans, LA, U.S.A.
4. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (1993). Current Protocols in Molecular Biology. Waltham, MA: John Wiley & Sons, Inc.
5. Carr, W.H., Sweeney, J.N., and Swingle, J. (1994). The Oceanic Institute's SPF shrimp breeding program: preparations and infrastructure. USMSFP 10th Anniversary Review, GCRL Special Publication No. 1, pp. 47-54.
6. Charlesworth, B., Snegowski, P., and Stephan, W. (1994). The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-220.
7. Dill, J., McIlwain, T., Rowland, W.C., and Pruder, G. (1994). The Gulf Coast research laboratory consortium's U.S. marine shrimp farming program. USMSFP 10th Anniversary Review. GCRL Special Publication No. 1, pp. 7-24.
8. Fickett, J.W. (1982). Recognition of protein coding regions in DNA sequences. Nucleic Acids Res 10:5303-5318.
9. Fries, R., and Ruddle, F.H. (1986). Gene mapping in domestic animals. In: St. John, J. (ed.), 10th Beltsville Symposium in Agriculture Research: Biotechnology for Solving Agricultural Problems, U.S. Department of Agriculture, Beltsville, MD, Vol. 10, pp. 19-37.
10. Fukuda, M., Wakasugi, S., Tsuzuki, T. Nomiyama, H., Shimada, K., and Muyata, T. (1985). Mitochondrial DNA-like sequences in the human nuclear genome. Characterization and implications in the evolution of mitochondrial DNA. J Mol Biol 186:257-266.
11. Garcia, D.K., Faggart, M.A., Rhoades, L., Wyban, J.A., Carr, W.H., Ebert, K.M., Sweeney, J.N., and Alcivar-Warren, A. (1994). Genetic diversity of cultured Penaeus vannamei shrimp using three molecular genetic techniques. Mol Mar Biol Biotechnol 3:270-280.
12. Gjedrem, T., and Fimland, E. (1995). Potential benefits from high health and genetically improved shrimp stocks. In: Browdy, C.L., and Hopkins, J.S. (eds.). Swimming Through Troubled Waters. Proceedings of the special session on shrimp farming, Aquaculture '95. Baton Rouge, LA: World Aquaculture Society, pp. 60-65.
13. Kan, J.L.C., and Moran, R.G. (1995). Analysis of a mouse gene encoding three steps of purine synthesis reveals use of an intronic polyadenylation signal without alternative exon usage. J Biol Chem 270:1823-1832.
14. Kato, S., Anderson, R.A., and Camerini-Otero, R.D. (1986). Foreign DNA introduced by calcium phosphate is integrated into repetitive DNA elements of the mouse L. cell genome. Mol Cell Biol 6:1787-1795.
15. Krishna, S., Cowan, G., Meade, J.C., Wells, R.A., Stringer, J.R., and Robson, K.J. (1993). A family of cation ATPase-like molecules from Plasmodium falciparum. J Cell Biol 120:385-398.
16. Lande, R., and Thompson, R. (1990). Efficiency of marker assisted selection in the improvement of quantitative traits. Genetics 124:743-756.
17. Levinson, G., and Gutman, G.A. (1987). Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221.
18. Lotz, J.M., Browdy, C.L., Carr, W.H., Frelier, P.P., and Lightner, D.V. (1995). USMSFP suggested procedures and guidelines for assuring the specific pathogen status of shrimp broodstocks and seed. In: Browdy, C.L., and Hopkins, J.S. (eds.). Swimming Through Troubled Waters. Proceedings of the special session on shrimp farming, Feb. 1-4, San Diego, CA. Baton Rouge, LA: World Aquaculture Society, pp. 66-75.
19. Moore, S.S., Barendse, W., Berger, K.T., Armitage, S.M., and Hetzel, D.J.S. (1992). Bovine and ovine DNA microsatellites from the EMBL and GENBANK databases. Anim Genet 23:463-467.
20. Ossorio, P.N., Sibley, L.D., and Boothroyd, J.C. (1991). Mitochondrial-like DNA sequences flanked by direct and inverted repeats in the nuclear genome of Toxoplasma gondii. J Mol Biol 222:525-536.
21. Pearson, W.R., and Lipman, D.J. (1988). Improved tools for biological sequence analysis. Proc Natl Acad Sci USA 85:2444-2448.
22. Pruder, G.D., Brown, C.L., Sweeney, J.N., and Carr, W.H. (1995). High health shrimp systems: seed supply - theory and practice. In: Browdy, C.L. and Hopkins, J.S. (eds.). Swimming Through Troubled Waters, Proceedings of the special session on shrimp farming, Aquaculture '95. Baton Rouge, LA: World Aquaculture Society.
23. Schlotterer, C., and Tautz, D. (1992). Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211-215.
24. Shay, J.W., and Werbin, H. (1992). New evidence for the insertion of mitochondrial DNA into the human genome: significance for cancer and aging. Mutat Res 275:227-235.
25. Shewmaker, C.K., Ridge, N.P., Pokalsky, A.R., Rose, R.E., and Hiatt, W.R. (1990). Nucleotide sequence of an EF-1α genomic clone from tomato. Nucleic Acids Res 18:4276.
26. Silberman, J.D., and Walsh, P.J. (1992). Species identification of spiny lobster phyllosome larvae via ribosomal DNA analysis. Mol Mar Biol Biotechnol 1:195-205.
27. Slettan, A., Olsaker, I., and Lie, Ø. (1993). Isolation and characterization of variable (GT)n repetitive sequences from Atlantic salmon, Salmo salar L. Anim Genet 24:195-197.
28. Stephan, W., and Cho, S. (1994). Possible role of natural selection in the formation of tandem-repetitive noncoding DNA. Genetics 136:333-341.
29. Sunden, S.L.F., and Davis, S.K. (1991). Evaluation of genetic variation in a domestic population of Penaeus vannamei (Boone): a comparison with three natural populations. Aquaculture 97:131-142.
30. Tian, G.L., Michel, F., Macadre, C., and Lazowska, J. (1993). Sequence of the mitochondrial gene encoding subunit I of cytochrome oxidase in Saccharomyces douglassi. Gene 124:153-163.
31. Valverde, J.R., Batuecas, B., Moratilla, C., Marco, R., and Garesse, R. (1994). The complete mitochondrial DNA sequence of the crustacean Artemia fransiscana. J Mol Evol 39: 400-408.
32. Westneat, D.F., Noon, W.A., Reeve, H.K., and Aquadro, C.F. (1988). Improved hybridization conditions for DNA '-fingerprints' probed with M13. Nucleic Acids Res 16:4161.
33. Wolff, G., Plante, I., Lang, B.F., Kuck, V., and Burger, G. (1994). Complete sequence of the mitochondrial DNA of the chlorophyte algae Prototheca wickerhamii. J Mol Biol 237: 75-86.
34. Wyban, J.A., Swingle, J.S., Sweeney, J.N., and Pruder, G.D. (1993). Specific pathogen-free Penaeus vannamei. World Aquacult 24:39-45.
35. Zullo, S., Sieu, L.C., Slightom, J.L., Hadler, H.I., and Eisenstadt, J.M. (1991). Mitochondrial D-loop sequences are integrated in the rat nuclear genome. J Mol Biol 221: 1223-1235.