Estimating biodegradative gene numbers at a JP-5 contaminated site using PCR

Applied Biochemistry and Biotechnology - Part A Enzyme Engineering and Biotechnology

Volumn 57-58, Issue , 1996, Pages 971-982

  Chandler, Darrell P ^a   Brockman, Fred J ^a  

^a BATTELLE MEMORIAL INSTITUTE   (United States)

Author keywords

Bioremediation; Community DNA; Jet fuel; JP 5; PCR

Indexed keywords

BACTERIAL DNA; FOSSIL FUEL;

ARTICLE; BACTERIAL GENE; BIOREMEDIATION; CHROMOSOME MAP; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; OXYGEN CONSUMPTION; POLYMERASE CHAIN REACTION; PROBABILITY; SOIL POLLUTANT;

BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; CHROMOSOME MAPPING; DNA, BACTERIAL; FOSSIL FUELS; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXYGEN CONSUMPTION; POLYMERASE CHAIN REACTION; PROBABILITY; SOIL POLLUTANTS;

EID: 0030095816     PISSN: 02732289     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02941777     Document Type: Article

References (36)

1. Atlas, R. M., Sayler, G., Burlage, R. S., and Bej, A. K. (1992), BioTechniques 12, 706-717.
2. Sayler, G. S. and Layton, A. C. (1990), Annu. Rev. Microbiol. 44, 625-648.
3. Steffan, R. J. and Atlas, R. M. (1991), Annu. Rev. Microbiol 45, 137-161.
4. Liesack, W. and Stackebrandt, E. (1992), Biodiversity and Conservation 1, 250-262.
5. Ward, D. M., Bateson, M. M., Weller, R., and Ruff-Roberts, A. L. (1992), Adv. Microb. Ecology 12, 219-286.
6. Brockman, F. J., Li, S. W., Fredrickson, J. K., Ringelberg, D. B., Kieft, T. L., Spadoni, C. M., McKinley, J. P., and White, D. C. (1995), Appl. Environ. Microbiol. Submitted.
7. Brockman, F. J., Kieft, T. L., Fredrickson, J. K., Bjornstad, B. N., Li, S. W., Spangenburg, W., and Long, P. E. (1992), Microb. Ecology 23, 279-301.
8. Haldeman, D. L., Amy, P. S., White, D. C., and Ringelberg, D. B. (1994), Appl. Environ. Microbiol. 60, 2697-2703.
9. Walia, S., Khan, A., and Rosenthal, N. (1990), Appl. Environ. Microbiol. 56, 254-259.
10. Erb, R. W. and Wagner-Döbler, I. (1993), Appl. Environ. Microbiol. 59, 4065-4073.
11. Fleming, J. T., Sanseverino, J., and Sayler, G. S. (1993), Environ. Sci. Technol. 27, 1068-1074.
12. Ka, J. O., Holben, W. E., and Tiedje, J. M. (1994), Appl. Environ. Microbiol. 60, 1116-1120.
13. Ogunseitan, O. A. (1994), in Process Engineering for Pollution and Control and Waste Minimization, Wise, D. L. and Trantolo, D. A., eds., Marcel Dekker, NY, pp. 171-192.
14. National Research Council (1993), In Situ Bioremediation, When Does It Work? National Academy Press, Washington, DC.
15. Kittel, J. A. (1995), Personal communication.
16. Kittel, J. A., Hinchee, R. E., Hoeppel, R., and Miller, R. (1994), in Proceedings of the 1994 Petroleum Hydrocarbons and Organic Chemicals in Groundwater: Prevention, Detection, and Remediation, Groundwater Publishing, Dublin.
17. Miller, R. N., Vogel, C. C., and Hinchee, R. E. (1991), in In Situ Bioreclamation: Applications and Investigations for Hydrocarbon and Contaminated Site Remediation, Hinchee, R. E. and Olfenbuttel, R. F., eds., Butterworth-Heinemann, Boston, pp. 283-302.
18. US Environmental Protection Agency (1986), Vol. v. 1B, method 5030, Office of Solid Waste and Emergency Response, Washington, DC.
19. Ogram, A., Sun, W., Brockman, F. J., and Fredrickson, J. K. (1995), Appl. Environ. Microbiol. 61, 763-768.
20. More, M. I., Herrick, J. B., Silva, M. C., Ghiorse, W. C., and Madsen, E. L (1994), Appl. Environ. Microbiol. 60, 1572-1580.
21. Xia, X., Bollinger, J., and Ogram, A. (1995), Mol. Ecology 4, 17-28.
22. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989), Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
23. Brock, T. D. and Madigan, M. T. (1991), Biology of Microorganisms, Prentice-Hall, Englewood Cliffs, NJ.
24. Kok, M., Oldenhuis, R., van der Linden, M. P. G., Raatjes, P., Kingma, J., van Lelyveld, P. H., and Witholt, B. (1989), J. Biol Chem. 264, 5435-5441.
25. Eggink, G., Lageveen, R. G., Altenburg, B., and Witholt, B. (1987), J. Biol. Chem. 262, 17,712-17,718.
26. Winstanley, C., Morgan, J. A. W., Pickup, R. W., Jones, J. G., and Saunders, J. R. (1989), Appl. Environ. Microbiol. 55, 771-777.
27. Herrick, J. B., Madsen, E. L., Batt, C. A., and Ghiorse, W. C. (1993), Appl. Environ. Microbiol. 59, 687-694.
28. Denome, S. A., Stanley, D. C., Olson, E. S., and Young, K. D. (1993), J. Bacteriology 175, 6890-6901.
29. Takizawa, N., Kaida, N., Torigoe, S., Moritani, T., Sawada, T., Satoh, S., and Kiyohara, H. (1994), J. Bacteriology 176, 2444-2449.
30. Recorbet, G., Picard, C., Normand, P., and Simonet, P. (1993), Appl. Environ. Microbiol. 59, 4289-4294.
31. Picard, C., Ponsonnet, C., Paget, E., Nesme, X., and Simonet, P. (1992), Appl. Environ. Microbiol. 58, 2717-2722.
32. Tebbe, C. C., and Vahjen, W. (1993), Appl. Environ. Microbiol. 59, 2657-2665.
33. Brockman, F. J. (1995), Mol. Ecology 4, 567-578.
34. Steffan, R. J., Goksoyr, J., Bej, A. K., and Atlas, R. M. (1988), Appl. Environ. Microbiol. 54, 2908-2915.
35. Kieft, T. L., Amy, P. S., Brockman, F. J., Fredrickson, J. K., Bjornstad, B. N., and Rosacker, L. L. (1993), Microb. Ecology 26, 59-78.
36. Colwell, F. S. (1989), Appl. Environ. Microbiol. 55, 2420-2423.