Identification of an essential core element and stimulatory sequences in a Kluyveromyces lactis ARS element, KARS101

Molecular Microbiology

Volumn 19, Issue 4, 1996, Pages 757-766

  Fabiani, Lucia ^a   Frontali, Laura ^a   Newlon, Carol S ^b  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b RUTGERS NEW JERSEY MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGODEOXYRIBONUCLEOTIDE;

ARTICLE; COMPARATIVE STUDY; DNA REPLICATION; GENE DELETION; GENETICS; KLUYVEROMYCES; MITOSIS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REPLICON; SACCHAROMYCES CEREVISIAE; SPECIES DIFFERENCE; CONTROLLED STUDY; DELETION MUTANT; DNA SEQUENCE; NONHUMAN; PRIORITY JOURNAL;

BASE SEQUENCE; DNA MUTATIONAL ANALYSIS; DNA REPLICATION; KLUYVEROMYCES; MITOSIS; MOLECULAR SEQUENCE DATA; OLIGODEOXYRIBONUCLEOTIDES; REPLICON; SACCHAROMYCES CEREVISIAE; SEQUENCE DELETION; SPECIES SPECIFICITY;

EID: 0030074510     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1996.401938.x     Document Type: Article

References (40)

1. Becker, D.M., and Guarente, L. (1991) High-efficiency transformation of yeast by electroporation. Meth Enzymol 194: 182-187.
2. Bell, S.P., and Stillman, B. (1992) ATP-dependent recognition of eukaryotic origins of replication by a multiprotein complex. Nature 357: 128-134.
3. Bell, S.P., Kobayashi, R., and Stillman, B. (1993) Yeast origin recognition complex functions in transcription silencing and DNA replication. Science 262: 1844-1870.
4. Bianchi, M.M., Santarelli, R., and Frontali, L. (1991) Plasmid functions involved in the stable propagation of the pKD1 circular plasmid in Kluyveromyces lactis. Curr Genet 19: 155-161.
5. Boyer, H.W., and Roulland-Dussoix, D. (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41: 459-472.
6. Brewer, B.J., and Fangman, W.L. (1987) The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51: 463-471.
7. Caddle, M.S., and Calos, M.P. (1994) Specific initiation at an origin of replication from Schizosaccharomyces pombe. Mol Cell Biol 14: 1796-1805.
8. Campbell, J.L., and Newlon, C.S. (1991) Chromosomal DNA replication. In The Molecular and Cellular Biology of the Yeast Saccharomyces: Genome Dynamics, Protein Synthesis, and Energetics. Broach, J.R., Jones, E.W., and Pringle, J.R. (eds). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp. 41-146.
9. Deshpande, A.M., and Newlon, C.S. (1992) The ACS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae. Mol Cell Biol 12: 4305-4313.
10. Desplan, C., Theis, J.F., and O'Farrell, P.H. (1985) The Drosophila developmental gene, engrailed, encodes a sequence-specific DNA binding activity. Nature 318: 630-635.
11. Dowell, S.J., Romanowski, P., and Diffley, J.F.X. (1994) Interaction of DBF4, the Cdc7 protein kinase regulatory subunit, with yeast replication origins in vivo. Science 265: 1243-1246.
12. Dubey, D.D., Zhu, J., Carlson, D.L., Sharma, K., and Huberman, J.A. (1994) Three ARS elements contribute to the ura4 replication origin region in the fission yeast, Schizosaccharoces pombe. EMBO J 13: 3638-3647.
13. Fabiani, L., Aragona, M., and Frontali, L. (1990) Isolation and sequence analysis of a K. lactis chromosomal element able to autonomously replicate in S. cerevisiae and K. lactis. Yeast 6: 69-76.
14. Foss, M., McNally, F.J., Laurenson, P., and Rine, J. (1993) Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae. Science 262: 1838-1844.
15. Gonçalves, P.M., Maurer, K., Mager, W.H., and Planta, R.J (1992) Kluyveromyces contains a functional ABF1-homologue. Nucl Acids Res 20: 2211-2215.
16. Henikoff, S. (1987) Unidirectional digestion with exonuclease III in DNA sequence analysis. Meth Enzymol 155: 156-165.
17. Huang, R., and Kowalski, D. (1993) A DNA unwinding element and an ARS consensus comprise a replication origin within a yeast chromosome. EMBO J 12: 4521-4531.
18. Huberman, J.A., Spotila, L.D., Nawotka, K.A., El-Assouli, S.M., and Davis, R.L. (1987) The in vivo replication origin of the yeast 2 μm plasmid. Cell 51: 473-481.
19. Inouye, S., and Inouye, M. (1987) Oligonucleotide-directed-site-specific mutagenesis using double-stranded plasmid DNA. In Synthesis and Application of DNA and RNA. Narang, S.A. (ed.). New York: Academic Press, pp. 181-206.
20. Li, J.J., and Herskowitz, I. (1993) Isolation of ORC6, a component of the yeast origin recognition complex by a one-hybrid system. Science 262: 1870-1874.
21. Marahrens, Y. and Stillman, B. (1992) A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science 255: 817-823.
22. Marahrens, Y., and Stillman, B. (1994) Replicator dominance in a eukaryotic chromosome. EMBO J 13: 3395-3400.
23. Maundrell, K., Hutchinson, A., and Shall, S. (1988) Sequence analysis of ARS elements in fission yeast. EMBO J 7: 2203-2209.
24. Messing, J., and Vieira, J. (1982) A new pair of M13 vectors for selecting either DNA strand of double-digested restriction fragments. Gene 19: 269-276.
25. Miller, C.A., and Kowalski, D. (1993) Cis-acting components in the replicative origin from ribosomal DNA of Saccharomyces cerevisiae. Mol Cell Biol 13: 5360-5369.
26. Natale, D.A., Umek, R.M., and Kowalski, D. (1993) Ease of DNA unwinding is a conserved property of yeast replication origins. Nucl Acids Res 21: 555-560.
27. Newlon, C.S. (1988) Yeast chromosome replication and segregation. Microbiol Rev 52: 568-601.
28. Newlon, C.S., and Theis, J.F. (1993) The structure and function of yeast ARS elements. Curr Opin Genet Devel 3: 752-758.
29. Newlon, C.S., Collins, I., Dershowitz, A., Deshpande, A.M., Greenfeder, S.A., Ong, L.Y., and Theis, J.F. (1993) Analysis of replication origin function of chromosome III. Cold Spring Harb Symp Quant Biol 48: 415-423.
30. Rao, H., and Stillman, B. (1995) The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. Proc Natl Acad Sci USA 92: 2224-2228.
31. Rao, H., Marahrens, Y., and Stillman, B. (1994) Functional conservation of multiple elements in yeast chromosomal replicator. Mol Cell Biol 14: 7643-7651.
32. Rivier, D.H., and Rine, J. (1992) An origin of DNA replication and a transcription silencer require a common element. Science 256: 659-663.
33. Rowley, A., Cocker, J.H., Harwood, J., and Diffley, J.F.X. (1995) Initiation complex assembly at budding yeast replication origins begins with recognition of a bipartite sequence by limiting amounts of the initiator, ORC. EMBO J 14: 2631-2641.
34. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
35. Sikorski, R.S., and Hieter, P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
36. Struhl, K., Stinchcomb, D.T., Scherer, S., and Davis, R.W. (1979) High frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc Natl Acad Sci USA 76: 1035-1039.
37. Theis, J.F., and Newlon, C.S. (1994) Domain B of ARS307 contains two functional elements and contributes to chromosomal replication origin function. Mol Cell Biol 14: 7652-7659.
38. Umek, R.M., and Kowalski, D. (1988) The ease of DNA unwinding as a determinant of initiation of yeast replication origins. Cell 52: 559-567.
39. Walker, S.S., Malik, A.K., and Eisenberg, S. (1991) Analysis of the interaction of functional domains of a nuclear origin of replication from Saccharomyces cerevisiae. Nucl Acids Res 22: 6255-6262.
40. Zhu, J., Carlson, D.L., Dubey, D.D., Sharma, K., and Huberman, J.A. (1994) Comparison of the two major ARS elements of the ura4 replication origin region with other ARS elements in the fission yeast Schizosaccharomyces pombe. Chromosoma 103: 414-422.