The impact of a bistrand abasic lesion on DMA duplex properties

Biopolymers

Volumn 38, Issue 4, 1996, Pages 439-445

  Gelfand, Craig A ^a   Eric Plum, G ^a   Grollman, Arthur P ^b   Johnson, Francis ^b   Breslauer, Kenneth J ^a  

^a RUTGERS UNIVERSITY   (United States)

^b STONY BROOK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIFFERENTIAL SCANNING CALORIMETRY; DNA; MELTING; MOLECULAR STRUCTURE; SPECTROSCOPY; THERMAL EFFECTS; THERMODYNAMIC STABILITY;

BISTRAND ABASIC DNA LESIONS; DUPLEX MELTING PROCESS;

BIOPOLYMERS;

DNA B; DNA BASE; DNA POLYMERASE; DOUBLE STRANDED DNA; OLIGONUCLEOTIDE; RNA POLYMERASE;

ARTICLE; DNA BASE COMPOSITION; DNA CONFORMATION; DNA DAMAGE; DNA REPAIR; DNA SYNTHESIS; GENE LOCUS; GENE MUTATION; THERMODYNAMICS;

BASE SEQUENCE; DNA; DNA DAMAGE; DNA REPAIR; MOLECULAR SEQUENCE DATA; THERMODYNAMICS;

EID: 0030069418     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-0282(199604)38:4<439::aid-bip1>3.0.co;2-u     Document Type: Article

References (42)

1. Lindahl, T. & Nyberg, B. (1972) Biochemistry 11, 3610-3617.
2. Lindahl, T. (1982)Ann. Rev. Biochem. 51, 61-87.
3. Loeb, L. A. & Preston, B. D. (1986) Ann. Rev. Genet. 20, 201-230.
4. Weiss, B. &Grossman, L. (1981)Adv. Enzymol. 60, 1-34.
5. Wallace, S. S. (1988) Environ. Mol. Mutagen. 12, 431-477.
6. Demple, B. and Harrison, L. (1994)Ann. Rev. Biochem. 63, 915-948.
7. Takeshita, M, Chang, C.-N., Johnson, F, Will, S. & Grollman, A. P. (1987) J. Biol. Chem. 262, 10171-10179.
8. Takeshita, M. & Eisenberg, W. (1994 ) Nucleic Acids Res. 22, 1897-1902.
9. Grollman, A. P. & Takeshita, M. (1995) in Radiation Damage in DNA: Structure/Function Relationships at Early Times, Fuciarelli, A. F. & Zimbrick, J. D., Eds., Battelle Press, Columbus, OH, pp. 293-304.
10. Zhou, W. & Doetsch, P. W. (1993) Proc. Natl. Acad. Sci. USA 90, 6601-6605.
11. Cai, H., Bloom, L. B., Eritja, R. & Goodman, M. F. (1993) J. Biol. Chem. 268, 23567-23572.
12. Randall, S. K., Eritja, R., Kaplan, B. E., Petruska, J. & Goodman, M. F. (1987) J. Biol. Chem. 262, 6864-6870.
13. Takeshita, M. & Grollman, A. P. (1992) J. Cell. Biochem. Suppl. 16B, 88.
14. Steighner, R. J. & Povirk, L. F. (1990) Mutat. Res. 240, 93-100.
15. Goldberg, I. H. (1991) Accts. Chem. Res. 24, 191198.
16. Dedon, P. C. & Goldberg, I. H. (1992) Chem. Res. Toxicol. 5, 311-333.
17. Wilson, D. M., III, Takeshita, M., Grollman, A. P. & Demple, B. (1995) J. Biol. Chem. 270, 16002-16007.
18. Takeuchi, M., Lillis, R., Demple, B. & Takeshita, M. (1994) J. Biol. Chem. 269, 21907-21914.
19. Kalnik, M. W., Chang, C.-N., Grollman, A. P. & Patel, D. J. (1988 ) Biochemistry 27, 924-931.
20. Kalnik, M. W., Chang, C.-N., Johnson, F., Grollman, A. P. & Patel, D. J. (1989) Biochemistry 28, 3373-3383.
21. Kouchakdjian, M., Eisenberg, M., Johnson, F., Grollman, A. P. & Patel, D. J. (1991 ) Biochemistry 30, 3262-3270.
22. Withka, J. M., Wilde, J. A. & Bolton, P. H. (1991) Biochemistry 30, 9931-9940.
23. Goljer, I., Withka, J. M., Kao, J. Y. & Bolton, P. H. (1992) Biochemistry 31, 11614-11619.
24. Cuniasse, P., Sowers, L. C., Eritja, R., Kaplan, B., Goodman, M. F., Cognet, J. A. H., Le Bret, M., Guschlbauer, W. & Fazakerley, G. V. (1989) Biochemistry 28, 2018-2026.
25. Cunaisse, Ph., Fazakerley, G. V., Guschlbauer, W., Kaplan, B. E. & Sowers, L. C. (1990) J. Mol. Biol 213,303-314.
26. Singh, M. P., Hill, G. C., Peoc'h, D., Rayner, B., Imbach, J.-L. & Lown, J. W. (1994) Biochemistry 33, 10271-10285.
27. Vesnaver, G., Chang, C.-N., Eisenberg, M., Grollman, A. P. & Breslauer, K. J. (1989) Proc. Natl Acad. Sci, USA 86, 3614-3618.
28. Shida, T., Arakawa, M. & Sekiguchi, J. (1994) Nucleos. Nucleot. 13, 1319-1326.
29. Pilch, D. S., Plum, G. E. & Breslauer, K. J. (1995) Curr. Opin. Struct. Biol. 5, 334-342.
30. Hamilton HPLC Applications Handbook (1993) Hamilton Co., Reno, Nevada.
31. Plum, G. E., Grollman, A. P., Johnson, F. & Breslauer, K. J. (1995) Biochemistry 34, 16148-16160.
32. Snell, F. D. & Snell, C. T. (1949) Colorimetric Methods of Analysis, Vol. 2, 3rd ed., Van Nostrand, New York, p. 671.
33. Griswold, B. L., Humoller, F. L. & McIntyre, A. R. (1951)Anal. Chem. 23, 192-194.
34. Job, P. (1928) Ann. Chim. (Paris) 9, 113-134.
35. Felsenfeld, G. & Rich, A. (1957) Biochim. Biophys. Ada 26,457-468.
36. Marky, L. & Breslauer, K. J. (1987) Biopolymers 26, 1601-1620.
37. Breslauer, K. J. (1994) Methods Moi Biol. 26, 347-372.
38. Breslauer, K. J., Frank, R., Blöcker, H. & Marky, L. A. (1986) Proc. Natl. Acad Sci. USA 83, 3746-3750.
39. Breslauer, K. J. (1995) Methods Enzymol. 259, 221-242.
40. Gray, D. M., Ratliff, R. L. & Vaughn, M. R. (1992) Methods Enzymol. 211, 389-406.
41. Breslauer, K. J., Freire, E. & Straume, M. (1992) Methods Enzymol. 211, 533-567.
42. Chalikian, T. V., Sarvazyan, A. P. & Breslauer, K. J. (1994) Biophys. Chem. 51, 89-109.