A common mechanism for the enhancement of mRNA 3′ processing by U3 sequences in two distantly related lentiviruses

Journal of Virology

Volumn 70, Issue 3, 1996, Pages 1612-1617

  Graveley, Brenton R ^a   Gilmartin, Gregory M ^a  

^a UNIVERSITY OF VERMONT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA PRECURSOR; POLYADENYLATED RNA; VIRUS MESSENGER RNA;

ARTICLE; ENHANCER REGION; EQUINE INFECTIOUS ANEMIA VIRUS; GENETIC CONSERVATION; HUMAN IMMUNODEFICIENCY VIRUS 1; LENTIVIRINAE; NONHUMAN; POLYADENYLATION; PRIORITY JOURNAL; RETROVIRUS; RNA BINDING; RNA PROCESSING; RNA SEQUENCE; RNA STRUCTURE;

ANIMALS; BASE SEQUENCE; DNA, VIRAL; EQUIDAE; HELA CELLS; HIV-1; HUMANS; INFECTIOUS ANEMIA VIRUS, EQUINE; MOLECULAR SEQUENCE DATA; MRNA CLEAVAGE AND POLYADENYLATION FACTORS; POLY A; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, MESSENGER; RNA, VIRAL; RNA-BINDING PROTEINS;

EID: 0030067697     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.3.1612-1617.1996     Document Type: Article

References (34)

1. Ahmed, Y. F., G. M. Gilmartin, S. M. Hanly, J. R. Nevins, and W. C. Greene. 1991. The HTLV-1 Rex response element mediates a novel form of mRNA polyadenylation Cell 64:727-737.
2. Brown, P. H., L. S. Tiley, and B. R. Cullen. 1991. Efficient polyadenylation within the human immunodeficiency virus type 1 long terminal repeat requires flanking U3-specific sequences. J. Virol. 65:3340-3343.
3. Carpenter, S., S. A. Nadin-Davis, Y. Wannemuehler, and J. A. Roth. 1993. Identification of transactivation-response sequences in the long terminal repeat of bovine immunodeficiency-like virus J. Virol 67:4399-4403.
4. Carswell, S., and J. C. Alwine. 1989. Efficiency of utilization of the simian virus 40 late polyadenylation site: effects of upstream sequences. Mol. Cell. Biol. 9:4248-4258
5. Carvalho, M., and D. Derse. 1991 Mutational analysis of the equine infectious anemia virus Tat-responsive element. J. Virol. 65:3468-3474.
6. Chakrabarti, L., M. Guyader, M. Alizon, M. D. Daniel, R. C. Desrosiers, P. Tiollais, and P. Sonigo. 1987. Sequence of simian immunodeficiency virus from macaque and its relationship to other human and simian retroviruses. Nature (London) 328:543-547.
7. Cherrington, J., and D. Ganem. 1992. Regulation of polyadenylation in human immunodeficiency virus (HIV): contributions of promoter proximity and upstream sequences. EMBO J. 11:1513-1524.
8. Cherrington, J., R. Russnak, and D. Ganem. 1992. Upstream sequences and cap proximity in the regulation of polyadenylation in ground squirrel hepatitis virus. J. Virol. 66:7589-7596.
9. Day, I. N. M. 1992. Analysis of the 5′-AAUAAA motif and its flanking sequence in human RNA: relevance to cDNA: library sorting. Gene 110:245-249.
10. DeZazzo, J. D., E. Falck-Pedersen, and M. J. Imperiale. 1991. Sequences regulating temporal poly(A) site switching in the adenovirus major late transcription unit. Mol. Cell. Biol. 11:5977-5984.
11. DeZazzo, J. D., and M. J. Imperiale. 1989. Sequences upstream of AAU AAA influence poly(A) site selection in a complex transcription unit Mol Cell. Biol. 9:4951-4961.
12. DeZazzo, J. D., J. E. Kilpatrick, and M. J. Imperiale. 1991. Involvement of long terminal repeat U3 sequences overlapping the transcription control region in human immunodeficiency virus type 1 mRNA 3′ end formation. Mol. Cell. Biol. 11:1624-1630
13. Donehower, L. A., A. L. Huang, and G. L. Hager. 1980. Regulatory and coding potential of the mouse mammary tumor virus long terminal redundancy J Virol. 37:226-238.
14. Feng, S., and E. C. Holland. 1988 HIV-1 tat trans-activation requires the loop sequence within tar. Nature (London) 334:165-167.
15. Franchini, G., C. Gurgo, H.-G. Guo, R. C. Gallo, E. Collalti, K. A. Fargnoli, L. F. Hall, F. Wong-Staal, and M. S. Reitz, Jr. 1987. Sequence of simian immunodeficiency virus and its relationship to the human immunodeficiency viruses. Nature (London) 328:539-543.
16. Gilmartin, G. M., E. S. Fleming, and J. Oetjen. 1992 Activation of HIV-1 pre-mRNA 3′ processing in vitro requires both an upstream element and TAR. EMBO J 11:4419-4428.
17. Gilmartin, G. M., E. S. Fleming, J. Oetjen, and B. R. Graveley. 1995. CPSF recognition of an HIV-1 mRNA 3′ processing enhancer: multiple sequence contacts involved in poly(A) site definition. Genes Dev. 9:72-83.
18. Gilmartin, G. M., and J. R. Nevins. 1989. An ordered pathway of assembly of components required for polyadenylation site recognition and processing. Genes Dev. 3:2180-2189.
19. Graveley, B. R., E. S. Fleming, and G. M. Gilmartin. Unpublished data 19a. Graveley, B. R., and G. M. Gilmartin. Unpublished data.
20. Graveley, B. R., E. S. Fleming, and G. M. Gilmartin. Unpublished data 19a. Graveley, B. R., and G. M. Gilmartin. Unpublished data.
21. Guyader, M., M. merman, P. Sonigo, F. Clavel, L. Montagnier, and M. Alizon. 1987. Genome organization and transactivation of the human immunodeficiency virus type 2 Nature (London) 326:662-669.
22. Iwasaki, K., and H. M. Temin. 1990. The efficiency of RNA 3′-end formation is determined by the distance between the cap site and the poly(A) site in spleen necrosis virus Genes Dev. 4:2299-2307.
23. Kawakami, T., L. Sherman, J. Dahlberg, A. Gazit, A. Yaniv, S. R. Tronick, and S. A. Aaronson. 1987 Nucleotide sequence analysis of equine infectious anemia virus proviral DNA Virology 158:300-312.
24. Keller, W. 1995. No end yet to messenger RNA 3′ processing! Cell 81:829-832
25. Lutz, C. S., and J. C. Alwine. 1994. Direct interaction of the U1 snRNP-A protein with the upstream efficiency element of the SV40 late polyadenylation signal. Genes Dev. 8:576-586.
26. Moreira, A., M. Wollerton, J. Monks, and N. J. Proudfoot. 1995. Upstream sequence elements enhance poly(A) site efficiency of the C2 complement gene and are phylogenetically conserved. EMBO J. 14:3809-3819.
27. Prescott, J., and E. Falck-Pedersen. 1994. Sequence elements upstream of the 3′ cleavage site confer substrate strength to the adenovirus L1 and L3 polyadenylation sites. Mol. Cell. Biol. 14:4692-4693.
28. Rüegsegger, U., K. Beyer, and W. Keller. Submitted for publication.
29. Russnak, R., and D. Ganem. 1990. Sequences 5′ to the polyadenylation signal mediate differential poly(A) site use in hepatitis B viruses Genes Dev. 4:764-776.
30. Sittler, A., H. Gallinaro, and M. Jacob. 1994. Upstream and downstream cis-acting elements for cleavage at the L4 polyadenylation site of adenovirus-2. Nucleic Acids Res. 22:222-231.
31. Swanstrom, R., W. J. De Lorbe, J. M. Bishop, and H. E. Vormus. 1981. Nucleotide sequence of cloned unintegrated avian sarcoma virus DNA: viral DNA contains direct and inverted repeats similar to those in transposable elements Proc. Natl. Acad. Sci. USA 78:124-128
32. Valsamakis, A., N. Schek, and J. C. Alwine. 1992. Elements upstream of the AAUAAA within the human immunodeficiency virus polyadenylation signal are required for efficient polyadenylation in vitro. Mol Cell. Biol 12:3699-3705
33. Valsamakis, A., S. Zeichner, S. Carswell, and J. C. Alwine. 1991. The human immunodeficiency virus type 1 polyadenylation signal: a 3′ long terminal repeat element upstream of the AAUAAA necessary for efficient polyadenylylation Proc Natl. Acad. Sci. USA 88:2108-2112.
34. Weichs an der Glon, C., J. Monks, and N. J. Proudfoot. 1991. Occlusion of the HIV poly(A) site. Genes Dev. 5:244-253.