Purifbation of single-stranded M13 DNA by cooperative triple-helix-mediated affinity capture

Analytical Biochemistry

Volumn 234, Issue 1, 1996, Pages 83-95

  Johnson, Arthur F ^a,b   Wang, Renfeng ^a,c   Ji, Huamin ^a,d   Chen, Danhua ^a   Guilfoyle, Richard A ^a   Smith, Lloyd M ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

^c PERKINELMER INC   (United States)

^d BECKMAN COULTER INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINITY; DNA; DNA SEQUENCES; FLUORESCENCE; GENE ENCODING; OLIGONUCLEOTIDES; PROTEINS; PURIFICATION;

ALKALINE PH; DNA SEQUENCING; MAGNETIC BEADS; POLYPYRIMIDINE; SOLID-PHASE; STREPTAVIDIN; TRIPLE HELIXES; TRIPLE-HELIX FORMATION;

CLONING;

OLIGONUCLEOTIDE; PURINE; PYRIMIDINE NUCLEOTIDE; SINGLE STRANDED DNA; STREPTAVIDIN;

AGAR GEL ELECTROPHORESIS; ARTICLE; BACTERIOPHAGE; DNA PURIFICATION; DNA SEQUENCE; FLUORESCENCE; NONHUMAN; PRIORITY JOURNAL; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY;

EID: 0030065889     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1006/abio.1996.0053     Document Type: Article

References (42)

1. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning - A Laboratory Manual (Ford, N., Ed.), 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
2. Sephaglas™ PhagePrep Kit Instructions (1991) Pharmacia P-L Biochemicals, Inc.
3. Kolner, D. E., Guilfoyle, R. A., and Smith, L. M. (1994) DNA Seq. J. DNA Seq. Map. 4, 253-257.
4. Boom, R., Sol, C. J. A., Salimans, M. M. M., Jansen, C. L., Wertheim-Van Dillen, P. M. E., and Van Der Noordaa, J. (1990) J. Clin. Microbiol. 28(3), 495-503.
5. Hines, R. N., O'Connor, K. C., Vella, G., and Warren, W. (1992) Biotechniques 12, 430-434.
6. Hawkins, T. (1992) J. DNA Sequencing and Mapping 3, 65-69.
7. Fry, G., Lachenmeier, E., Mayrand, E., Giusti, B., Fisher, J., Johnston-Dow, L., Cathcart, R., Finne, E., and Kilaas, L. (1992) Biotechniques 13, 124-131.
8. Smith, L. M., and Hood, L. E. (1987) Biotechnology 5, 933-939.
9. Guilfoyle, R. A., and Smith, L. M. (1994) Nucleic Acids Res. 22, 100-107.
10. Kool, E. T. (1991) J. Am. Chem. Soc. 113, 6265-6266.
11. Prakesh, G., and Kool, E. T. (1992) J. Am. Chem. Soc. 114, 3523-3527.
12. D'Souza, D. J., and Kool, E. T. (1992) J. Biomol. Struct. Dynam. 10, 141-152.
13. Hausheer, F. H., Chandra Singh, U., Saxe, J. D., Flory, J. P., and Tufto, K B. (1992) J. Am. Chem. Soc. 114, 5356-5362.
14. Ji, H., and Smith, L. M. (1993) Anal. Chem. 65, 1323-1328.
15. Luckey, J. A., Drossman, H., Kostichka, A. J., Mead, D. A., D'Cunha, J., Norris, T. B., and Smith, L. M. (1990) Nucleic Acids Res. 18, 4417-4421.
16. Mead, D. A., McClary, J. A., Luckey, J. A., Kostichka, A. J., Witney, F. R., and Smith, L. M. (1991) Biotechniques 11, 76-87.
17. Brumley, R. L., Jr., and Smith, L. M. (1991) Nucleic Acids Res. 19, 4121-4126.
18. Kostichka, A. J., Marchbanks, M. L., Brumley, R. L., Jr., Drossman, H., and Smith, L. M. (1992) Biotechnology 10, 78-81.
19. Giddings, M. C., Brumley, R. L., Haker, M., and Smith, L. M. (1993) Nucleic Acids Res. 21, 4530-4540.
20. Porschke, D. (1971) Biopolymers 10, 1989-2013.
21. Filimonov, V. V., and Privalov, P. L. (1978) J. Mol. Biol. 122, 465-470.
22. Uhlen, M. (1989) Nature 340, 733-734.
23. Hornes, E., and Korsnes, L. (1990) Genet. Anal. Tech. Appl. 7, 145-150.
24. Felsenfeld, G., Davies, D. R., and Rich, A. (1957) J. Am. Chem. Soc. 79, 2023-2024.
25. Lipsett, M. N. (1964) J. Biol. Chem. 239, 1256-1260.
26. Felsenfeld, G., and Miles, H. T. (1967) Annu. Rev. Biochem. 36, 407-448.
27. Mosher, H. E., and Dervan, P. B. (1987) Science 238, 645-650.
28. Lyamichev, V. I., Mirkin, S. M., Frank-Kamenetskii, M. D., and Cantor, C. R. (1988) Nucleic Acids Res. 16, 2165-2178.
29. Saenger, W. (1988) in Principles of Nucleic Acid Structure, pp. 122-131, Springer-Verlag, New York.
30. Botstein, D., David, R. W., and Roth, J. R. (1980) Advanced Bacterial Genetics: A Manual for Genetic Engineering, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
31. Birnboim, H. C., and Doly, J. (1979) Nucleic Acids Res. 7, 1513-1523.
32. Amasino, R. M. (1986) Anal. Biochem. 152, 304-307.
33. Kohne, D. E., Levison, S. A., and Byers, M. J. (1977) Biochemistry 16, 5329-5341.
34. Xodo, L. E., Manzini, G., Quadrifoglio, F., Marel, G. A., and Boom, J. H. (1991) Nucleic Acids Res. 19, 5625-5631.
35. Ji, H., and Smith, L. M., unpublished work.
36. Ji, H., Smith, L. M., and Guilfoyle, R. A. (1994) Genet. Anal. Tech. Appl. 11, 43-47.
37. Morgan, A. R., and Wells, R. D. (1968) J. Mol. Biol. 37, 63-80.
38. Flavell, R. A., Birfelder, E. J., Sanders, J. P. M., and Bost, P. (1974) Eur. J. Biochem. 47, 535-543.
39. R M-280 (1991) Vol. 6, Dynal, Great Neck, NY.
40. Avidin-Biotin Chemistry: A Handbook, 2nd ed., (1994) Pierce Chemical Company, Rockford, IL.
41. R lacZ Vector Purification, Dynal, Great Neck, NY.
42. Nilsson, M., Malmgren, H., Samiotaki, M., Kwiatkowski, M., Chowdhary, B. P., and Landegren, U. (1994) Science 265, 2085-2088.