The phylogeny of Methanopyrus kandleri

International Journal of Systematic Bacteriology

Volumn 46, Issue 1, 1996, Pages 348-351

  Rivera, Maria C ^a   Lake, James A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; RNA 18S;

ARTICLE; BACTERIAL METABOLISM; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TAXONOMY;

BACTERIA (MICROORGANISMS); CRENARCHAEOTA; EUKARYOTA; HALOBACTERIA; METHANOPYRUS; METHANOPYRUS KANDLERI; POSIBACTERIA; PROKARYOTA;

EID: 0030061375     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-46-1-348     Document Type: Article

References (40)

1. Anderson, L. K., and F. A. Eiserling. 1985. Plasmids of the cyanobacterium Synechocystis 6701. FEMS Microbiol. Lett. 29:193-195.
2. Ann, D. K., I. K. Moutsatsos, T. Nakamura, H. H. Lin, P. L. Mao, M. J. Lee, S. Chin, R. K. H. Liem, and E. Wang. 1991. Isolation and characterization of the rat chromosomal gene for a polypeptide (pS1) antigenically related to statin. J. Biol. Chem. 266:10429-10437.
3. Auer, J., G. Spicker, and A. Bock. 1990. Nucleotide sequence of the gene for elongation factor EF-1 from the extreme thermophilic archaebacterium Thermococcus celer. Nucleic Acids Res. 18:3989.
4. Auer, J., G. Spicker, L. Meyerhofer, G. Puhler, and A. Bock. 1991. Organization and nucleotide sequence of the gene cluster comprising the elongation factor 1α from Sulfolobus acidocaldarius. Syst. Appl. Microbiol. 14:14-20.
5. Bachleitner, M., W. Ludwig, K. O. Stetter, and K. H. Schleifer. 1989. Nucleotide sequence of the gene coding for elongation factor Tu from the extreme thermophilic eubacterium Thermotoga maritima. FEMS Microbiol. Lett. 57:115-120.
6. Baldacci, G., F. Guinet, J. Tillit, G. Zaccai, and A. M. de Recondo. 1990. Functional implications related to the gene structure of the elongation factor EF-Tu from Halobacterium marismortui. Nucleic Acids Res. 18:507-511.
7. Brands, J. H., J. A. Maassen, F. J. van Hemert, R. Amons, and W. Moller. 1986. The primary structure of the subunit of human elongation factor 1: structural aspects of guanine-binding nucleotide-binding sites. Eur. J. Biochem. 155:167-171.
8. Burggraf, S., K. O. Stetter, P. Rouviere, and C. R. Woese. 1991. Methanopyrus kandleri: an archeal methanogen unrelated to all other known methanogens. Syst. Appl. Microbiol. 14:346-351.
9. Clark, B. F. C., M. Kjeldgard, T. F. M. la Cour, S. Thirup, and J. Nyborg. 1990. Structural determination of the functional sites of E. coli elongation factor Tu. Biochim. Biophys. Acta 1050:203-208.
10. Cottrelle, P., D. Thiele, V. L. Price, S. Memet, J. Y. Micoin, C. Marck, J. M. Buhler, A. Sentenac, and P. Fromageot. 1985. Cloning, nucleotide sequence, and expression of one of two genes for yeast elongation factor 1 alpha. J. Biol. Chem. 260:3090-3096.
11. Creti, R., F. Citarella, O. Toboni, A. M. Sanangelantoni, P. Palm, and P. Cammarano. 1991. Nucleotide sequence of a DNA region comprising the gene for elongation factor 1 from the ultrathermophilic archacote Pyrococcus woesei, phylogenetic implications. J. Mol. Evol. 33:332-342.
12. Gogarten, J. P., H. Kibak, P. Dittrich, L. Taiz, B. J. Bowman, M. F. Manolson, R. J. Poole, T. Date, T. Oshima, et al. 1989. Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes. Proc. Natl. Acad. Sci. USA 86:6661-6665.
13. Hashimoto, T., Y. Nakamura, F. Nakamura, T. Shirakura, J. Adachi, N. Goto, K. Okamoto, and M. Hasegawa. 1994. Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia. Mol. Biol. Evol. 11:65-71.
14. Herrmann, B. G., and A. Frischauf. 1987. Isolation of genomic DNA. Methods Enzymol. 152:180-183.
15. Hovemann, B., S. Richter, U. Walldorf, and C. Cziepluch. 1988. Two genes encode related cytoplasmic elongation factors 1 alpha (EF-1 alpha) in Drosophila melanogaster with continuous and stage specific expression. Nucleic Acids Res. 16:3175-3194.
16. Huber, R., M. Kurr, H. W. Jannasch, and K. O. Stetter. 1989. A novel group of abyssal methanogenic archaebacteria (Methanopyrus) growing at 110°C. Nature (London) 342:833-834.
17. Iwabe, N., K. Kuma, M. Hasegawa, S. Osawa, and T. Miyata. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
18. Jones, J. J., D. P. Nagle, and W. B. Whitman. 1987. Methanogens and the diversity of archaebacteria. Microbiol. Rev. 51:135-177.
19. Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Munro (ed.), Mammalian protein metabolism. Academic Press, New York.
20. Jurnak, F., S. Heffron, B. Schick, and K. Delaria. 1990. Three-dimensional models of the GDP and GTP forms of the guanine nucleotide domain of Escherichia coli elongation factor Tu. Biochim. Biophys. Acta 1050:209-214.
21. Kimura, M. 1983. The natural theory. Cambridge University Press, London.
22. Kraus, M., M. Gotz, and W. Loffelhardt. 1990. The cyanelle str operon from Cyanophora paradoxa: sequence analysis and phylogenetic implications. Plant Mol. Biol. 15:561-565.
23. Kurasawa, Y., O. Numata, M. Katoh, H. Hirano, J. Chiba, and Y. Watanabe. 1992. Identification of Tetrahymena 14-nm filament-associated protein as elongation factor 1 alpha. Exp. Cell Res. 203:251-258.
24. Lake, J. A. 1988. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature (London) 331:184-186.
25. Lake, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
26. Lechner, K., and A. Bock. 1987. Cloning and nucleotide sequence of the gene for an archaebacterial protein synthesis elongation factor Tu. Mol. Gen. Genet. 208:523-528.
27. Lockhart, P. J., M. A. Steel, M. D. Hendy, and D. Penny. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
28. Moldave, K. 1985. Eukaryotic protein synthesis. Annu. Rev. Biochem. 54: 1109-1125.
29. Pokalsky, A. R., W. R. Hiatt, N. Ridge, R. Rasmussen, et al. 1989. Structure and expression of elongation factor-1-alpha in tomato. Nucleic Acids Res. 17:4661-4673.
30. Reeve, J. N. 1992. Molecular biology of methanogens. Annu. Rev. Microbiol. 46:165-191.
31. Riis, B., S. I. S. Rattan, B. F. C. Clark, and W. C. Merrick. 1990. Eukaryotic protein elongation factors. Trends Biol. Sci. 15:420-423.
32. Rivera, M. C., and J. A. Lake. 1992. Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science 257:74-76.
33. Runnegar, B. 1993. Proterozoic eukaryotes: evidence from biology and geology, p. 287-297. In S. Bengtson (ed.), Early life on earth. Cambridge University Press, Cambridge.
34. Saiki, R. K., D. H. Gelfand, S. Stoffer, S. J. Scharf, R. Higuchi, G. T. Horn, K. B. Mullis, and H. A. Erlich. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
35. Slesarev, A. I., K. O. Stetter, J. A. Lake, M. Gellert, R. Krah, and S. A. Kozyavkin. 1993. DNA topoisomerase V is a relative of eukaryotic topoisomerase I from a hyperthermophilic prokaryote. Nature (London) 364:735-737.
36. Stetter, K. O. 1988. Archaeoglobus fulgidus gen. nov., sp. nov.: a new taxon of extremely thermophilic archaebacteria. Syst. Appl. Microbiol. 10:172-173.
37. Stetter, K. O., G. Fiala, G. Huber, R. Huber, and A. Segerer. 1990. Hyperthermophilic microorganisms. FEMS Microbiol. Rev. 75:117-124.
38. Stetter, K. O., H. Konig, and E. Stackebrandt. 1983. Pyrodictium gen. nov., a new genus of submarine disc-shaped sulfur reducing archaebacteria growing optimally at 105°C. Syst. Appl. Microbiol. 4:535-551.
39. Tesch, A., and F. Klink. 1990. Cloning and sequencing of the gene coding for the elongation factor 1-alpha from the archaebacterium Thermoplasma acidophilum. FEMS Microbiol. Lett. 71:293-297.
40. Walsby, A. E., J. Van Rijn, and Y. Cohen. 1983. The biology of new gasvacuolate cyanobacterium, Dactylococcopsis salina sp. nov., in Solar Lake. Proc. R. Soc. Lond. B Biol. Sci. 217:417-447.