Microbiology mapping of a replication origin within the promoter region of two unlinked, abundantly transcribed actin genes of Physarum polycephalum

Molecular and Cellular Biology

Volumn 16, Issue 3, 1996, Pages 968-976

  Bénard, Marianne ^a   Lagnel, Claire ^b   Pallotta, Dominick ^b   Pierron, Gérard ^a,c  

^a Institute de Recherche sur le Cancer   (France)

^b UNIVERSITÉ LAVAL   (Canada)

^c IRC   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CHONDROMYCES; MYXOGASTRIA; PHYSARUM POLYCEPHALUM;

ACTIN;

ARTICLE; DNA SEQUENCE; GENE MAPPING; GENE REPLICATION; GENETIC TRANSCRIPTION; NONHUMAN; PHYSARUM POLYCEPHALUM; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; REPLICON;

ACTINS; AMINO ACID SEQUENCE; ANIMALS; MOLECULAR SEQUENCE DATA; PHYSARUM POLYCEPHALUM; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PROMOTER REGIONS (GENETICS); REPLICATION ORIGIN; REPLICON;

EID: 0030058141     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/mcb.16.3.968     Document Type: Article

References (44)

1. Adam, L., A. Laroche, A. Barden, G. Lemieux, and D. Pallotta. 1991. An unusual actin-encoding gene in Physarum polycephalum. Gene 106:79-86.
2. Bénard, M., C. Lagnel, and G. Pierron. 1995. Site specific initiation of DNA replication within the non transcribed spacer of Physarum rDNA. Nucleic Acids Res. 23:1447-1453.
3. Bénard, M., and G. Pierron. 1990. Physical relationship between a gene and its origin of replication in Physarum polycephalum Exp. Cell Res. 186:299-305.
4. Bénard, M., and G. Pierron. 1992. Mapping of a Physarum chromosomal origin of replication tightly linked to a developmentally-regulated profilin gene. Nucleic Acids Res. 20:3309-3315.
5. Bergemann, A., and E. M. Johnson. 1992. The HeLa Pur factor binds single-stranded DNA at a specific element conserved in gene flanking regions and origins of DNA replication Mol. Cell. Biol. 12:1257-1265.
6. Binette, F., M. Bénard, A. Laroche, G. Pierron, G. Lemieux, and D. Pallotta. 1990 Cell-specific expression of a profilin gene family. DNA Cell Biol 9:323-334.
7. Braun, R., C. Mittermayer, and H. P. Rusch. 1965. Sequential temporal replication of DNA in Physarum polycephalum. Proc. Natl. Acad. Sci USA 53:924-927
8. Brewer, B. J. 1988. When polymerases collide replication and the transcriptional organization of the E. coli chromosome Cell 53:679-686.
9. Brewer, B. J., and W. L. Fangman, 1987. The localisation of replication origins in ARS plasmids in S. cerevisiae. Cell 51:463-471.
10. Brewer, B. J., and W. L. Fangman. 1988 A replication fork barrier at the 3′ end of yeast ribosomal RNA genes. Cell 55:637-643.
11. Burland, T. G., J. Bailey, L. Adam, M. J. Mukhopadhyay, W. F. Dove, and D. Pallotta. 1992. Transient expression in Physarum of a chloramphenicol acetyltransferase gene under the control of actin gene promoters. Curr. Genet. 21:393-398.
12. Burland, T. G., J. Bailey, D. Pallotta, and W. F. Dove. 1993. Stable, selectable, integrative DNA transformation in Physarum. Gene 132:207-212
13. Burland, T. G., and D. Pallotta. 1995 Homologous gene replacement in Physarum Genetics 139:147-158.
14. Carrino, J. J., V. Kueng, R. Braun, and T. G. Laffler. 1987. Distinct replication-independent and -dependent phases of histone gene expression during the Physarum cell cycle. Mol Cell Biol 7:1933-1937.
15. Cech, T. R., and S. L. Brehm. 1981. Replication of the extrachromosomal ribosomal RNA genes of Tetrahymena thermophila. Nucleic Acids Res. 9:3531-3543.
16. Delidakis, C., and F. C. Kafatos. 1989. Amplification enhancers and replication origins in the autosomal chorion gene cluster of Drosophila. EMBO J. 8:891-901.
17. Dershowitz, A., and C. S. Newlon. 1993. The effect on chromosome stability of deleting replication origins. Mol. Cell Biol. 13:391-398
18. Diller, J., and H. W. Sauer. 1993. Two early replicated, developmentally controlled genes of Physarum display different patterns of DNA replication by two-dimensional agarose gel electrophoresis Chromosoma 102:563-574.
19. Dobbs, D. L., W. L. Shaiu, and R. M. Benbow. 1994. Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA. Nucleic Acids Res 22:2479-2489
20. Ferris, P. J. 1985. Nucleotide sequence of the central non transcribed spacer region of Physarum polycephalum rDNA. Gene 39:203-211.
21. Funderud, S., R., Andreassen, and F. Haugli. 1978. DNA replication in Physarum polycephalum: bidirectional replication of DNA within replicons. Nucleic Acids Res. 5:713-721.
22. Funderud, S., R. Andreassen, and F. Haugli. 1979. DNA replication in Physarum polycephalum: electron microscopic and autoradiographic analysis of replicating DNA from defined stages of the S period. Nucleic Acids Res. 6:1417-1427.
23. Giacca, M., L. Zentilin, P. Norio, S. Diviacco, D. Dimitrova, G. Contreas, G. Biamonti, G. Perini, F. Weighardt, S. Riva, and A. Falaschi. 1994. Fine mapping of a replication origin of human DNA. Proc. Natl. Acad. Sci. USA 91:7119-7124.
24. Hamelin, M., L. Adam, G. Lemieux, and D. Pallotta. 1988. Expression of the three unlinked isocoding actin genes of Physarum polycephalum. DNA 7:317-328.
25. Heck, M. S., and A. C. Spradling. 1990. Multiple replication origins are used during Drosophila chorion gene amplification. J Cell Biol. 110:903-914.
26. Hernandez, P., L. Martin-Parras, M. L. Martinez-Robles, and J. B. Schartzman. 1993. Conserved features in the mode of replication of eukaryotic ribosomal RNA genes. EMBO J. 12:1475-1485.
27. Kessler, D. 1967. Nucleic acid synthesis during and after mitosis in the slime mold Physarum polycephalum. Exp. Cell Res. 45:676-680.
28. Kitsberg, D., S. Selig, I. Keshet, and H. Cedar. 1993. Replication structure of the human β-globin gene domain. Nature (London) 366:588-590.
29. Liang, C., J. D. Spitzer, H. S. Smith, and S. A. Gerbi. 1993. Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A. Genes Dev. 7:1072-1084.
30. Linskens, M. H., and J. A. Huberman. 1988. Organization of replication of ribosomal DNA in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:4927-4935.
31. Little, R. D., T. H. Platt, and C. L. Schildkraut. 1993. Initiation and termination of DNA replication in human rRNA genes. Mol. Cell. Biol 13:6600-6613.
32. Natale, D. A., A. E. Schubert, and D. Kowalski. 1992. DNA helical stability accounts for mutational defects in a yeast replication origin. Proc. Natl. Acad. Sci. USA 89:2654-2658.
33. Natale, D. A., R. M. Umek, and D. Kowalski. 1993. Ease of DNA unwinding is a conserved property of yeast replication origins. Nucleic Acids Res 21:555-560.
34. Newlon, C. S., L. R. Lipchitz, I. Collins, A. Deshpande, R. J. Devenish, R. P. Green, H. L. Klein, T. G. Palzkill, R. Ren, S. Synn, and S. T. Woody. 1991. Analysis of a circular derivative of Saccharomyces cerevisiae chromosome HL a physical map and identification and location of ARS elements. Genetics 129:343-357.
35. Pallotta, D., A. Laroche, A. Tessier, T. Schinnick, and G. Lemieux. 1986. Molecular cloning of stage specific mRNAs from amoeba and plasmodia of Physarum polycephalum. Biochem. Cell Biol. 64:1294-1302.
36. Pierron, G., and M. Bénard. In M. L. DePamphilis (ed.), DNA replication in eukaryotic cells, in press. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
37. Pierron, G., D. Durica, and H. W. Sauer. 1984. Invariant temporal order of replication of four actin gene loci during the naturally synchronous mitotic cycle of Physarum polycephalum. Proc. Natl. Acad. Sci. USA 81:6393-6397
38. Pierron, G., H. W. Sauer, B. Toublan, and R. Jalouzot. 1982. Physical relationship between replicons and transcription units in Physarum polycephalum. Eur. J. Cell Biol. 29:104-113.
39. Schedl, T., and W. F. Dove. 1982. Mendelian analysis of the organization of actin sequences in Physarum polycephalum. J. Mol. Biol. 160:41-57.
40. Shinomiya, T., and S. Ina. 1991. Analysis of chromosomal replicons in early embryos of Drosophila melanogaster by two-dimensional gel electrophoresis Nucleic Acids Res. 19:3935-3941.
41. Vandekerckhove, J., and K. Weber. 1978. The amino acid sequence of Physarum actin. Nature (London) 276:720-721.
42. Vogt, V. M., and R. Braun. 1977. The replication of ribosomal DNA in Physarum polycephalum. Eur. J. Biochem. 80:557-566.
43. Wanka, F. 1991. Control of eukaryotic DNA replication at the chromosomal level Bioessays 13:613-618.
44. Wiesendanger, B., R. Lucchini, T. Koller, and J. M. Sogo. 1994. Replication fork barriers in the Xenopus rDNA. Nucleic Acids Res. 22:5038-5046.