NMR structural studies of DNA decamer duplex containing the Dewar photoproduct of thymidylyl(3′→5′)thymidine: Conformational changes of the oligonucleotide duplex by photoconversion of a (6-4) adduct to its Dewar valence isomer

European Journal of Biochemistry

Volumn 235, Issue 1-2, 1996, Pages 359-365

  Hwang, Geum Sook ^a   Kim, Jong Ki ^b   Choi, Byong Seok ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b Catholic University of Daegu   (South Korea)

Author keywords

(6 4) adduct; Dewar valence isomer; NMR; Photochemically modified oligomer; Photoisomerization

Indexed keywords

ARTICLE; DNA STRUCTURE; NUCLEAR MAGNETIC RESONANCE; PHOTOCHEMISTRY; PRIORITY JOURNAL;

BASE COMPOSITION; BASE SEQUENCE; DNA; HYDROGEN BONDING; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; PHOTOCHEMISTRY; PROTONS; PYRIMIDINE DIMERS; ULTRAVIOLET RAYS;

EID: 0030050520     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1996.00359.x     Document Type: Article

References (28)

1. Wang, S. Y. (ed.) (1976) Photochemistry and photobiology of nu-cleic acids, vol. I and II, Academic Press, New York.
2. Cadet, J. & Vigny, P. (1990) in Binorganic photochemistry (Marri-son, H., ed.) vol. I, pp. 1-272, John Wiley & Sons, New York.
3. Mitchell, D. L. (1988) Photochem. Photobiol 48, 51-57.
4. Brash, D. E. (1988) Photochem. Photobiol. 48, 59-66.
5. Franklin, W. A. & Haseltine, W. A. (1986) Mutat. Res. 165, 1-7.
6. Hutchinson, F. (1987) Photochem. Photobiol. 45, 897-903.
7. Taylor, J.-S. & Cohrs, M. P. (1987) J. Am. Chem. Soc. 109, 2834-2835.
8. Taylor, J.-S., Lu, H.-F. & Kotyk, J. J. (1990) Photochem. Photobiol. 51, 161-167.
9. Zhao, X. & Taylor, J.-S. (1994) J. Am. Chem. Soc. 116, 8870-8876.
10. LeClerc, J. E., Borden, A. & Lawrence, C. W. (1991) Proc. Natl Acad. Sci. USA 88, 9685-9689.
11. Svoboda, D. L., Smith, C. A., Taylor, J.-S. & Sancar, A. (1993) J. Biol. Chem. 268, 10694-10700.
12. Reardon, J. T., Nichols, A. F., Keeney, S., Smith, C. A., Taylor, J.-S., Linn, S. & Sancar, A. (1993) J. Biol. Chem. 268, 21301-21 308.
13. Taylor, J.-S. (1995) Pure & Appl. Chem. 67, 183-190.
14. Taylor, J.-S., Garrett, D. S. & Cohrs, M. P. (1988) Biochemistry 27, 7206-7215.
15. Kan, L.-S., Voituriez, L. & Cadet. J. (1992) J. Photochem. Photobiol. B:Biol. 12, 339-357.
16. Kim, J.-K. & Choi, B.-S. (1995) Eur J. Biochem. 228, 849-854.
17. Kim, J.-K., Patel, D. & Choi, B.-S. (1995) Photochem. Photobiol. 62, 44-50.
18. Kemmink, J., Boelens, R., Koning, T. M. G., Kaptein, R., van der Marel, G. A. & van Boom, J. H. (1987) Eur. J. Biochem. 162, 37-43.
19. Taylor, J.-S., Garrett, D. S., Brockie, I. R., Svohoda, D. L. & Telser, J. (1990) Biochemists 29, 8858-8866.
20. Rao, S. N. & Kollman, P. (1985) Photochem. Photobiol. 42, 465-475.
21. Plateau, P. & Guéron, M. (1982) J. Am. Chem. Soc. 104, 7310-7311.
22. Marion, D. & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun, 113, 967-974.
23. Rance, M., Sorenson, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R. & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 117, 479-485.
24. Rycyna, R. E. & Alderfer, J. L. (1985) Nucleic Acid Res. 13, 5949-5963.
25. Kan, L.-S., Voituriez, L. & Cadet, J. (1988) Biochemistry 27, 5796-5803.
26. Taylor, J.-S., Garrett, D. S., Brockie, I. R., Svohoda, D. L. & Telser, J. (1990) Biochemistry 29, 8858-8866.
27. Audcar, J. G. & Crothers, D. (1989) Proc. Natl Acad. Sci. USA 86, 2622-2626.
28. Wüthrich, K. (ed.) (1986) NMR of protein and nucleic acids, pp. 246-249, John Wiley & Sons, New York.