Hindered diffusion in agarose gels: Test of effective medium model

Biophysical Journal

Volumn 70, Issue 2 I, 1996, Pages 1017-1023

  Johnson, Erin M ^a   Berk, David A ^b   Jain, Rakesh K ^b   Deen, William M ^a  

^a USA   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE;

ARTICLE; BLEACHING; CELL MEMBRANE PERMEABILITY; DIFFUSION; FLUORESCENCE; HYDRODYNAMICS; MACROMOLECULE;

BOVINAE;

EID: 0030047580     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(96)79645-5     Document Type: Article

References (33)

1. Berk, D. A., F. Yuan, M. Leunig, and R. K. Jain. 1993. Fluorescence photobleaching with spatial Fourier analysis: measurement of diffusion in light-scattering media. Biophys. J. 65:2428-2436.
2. Boyer, P. M., and J. T. Hsu. 1992. Experimental studies of restricted protein diffusion in an agarose matrix. AICHE J. 38:259-272.
3. Brady, J. 1994. Hindered diffusion. In Extended Abstracts, AICHE Annual Meeting, San Francisco, CA. p.320.
4. Brinkman, H. C. 1947. A calculation of the viscous force exerted by a flowing fluid in a dense swarm of particles. Appl. Sci. Res. A. 1:27-34.
5. Cameron, R. E., M. A. Jalil, and A. M. Donald. 1994. Diffusion of bovine serum albumin in amylopectin gels measured using Fourier transform infrared microspectroscopy. Macromolecules. 27:2708-2713.
6. De Belder, A. N , and K. Granath. 1973. Preparation and properties of fluorescein-labelled dextrans. Carbohydr. Res. 30:375-378.
7. Deen, W. M. 1987. Hindered transport of large molecules in liquid-filled pores. AICHE J. 33:1409-1425.
8. Djabourov, M., A H. Clark, D. W. Rowlands, and S. B. Ross-Murphy. 1989. Small-angle x-ray scattering characterization of agarose sols and gels. Macromol Rev. 22:180-188.
9. Dubra, P, L., and J. M. Principi. 1989. Optimization of size-exclusion separation of proteins on a Superose column. J. Chromatogr. 479: 159-164.
10. Gibbs, S. J., E. N. Lightfoot, and T. W. Root. 1992. Protein diffusion in porous gel filtration chromatography media studied by pulsed field gradient NMR sepctroscopy. J. Phys. Chem. 96:7458-7462.
11. Hou, L., F. Lanni, and K. Luby-Phelps. 1990. Tracer diffusion in F-actin and ficoll mixtures: toward a model for cytoplasm. Biophys. J. 58: 31-43.
12. Jackson, G. W., and D. G. James. 1986. The permeability of fibrous porous media. Can. J. Chem. Eng. 64:362-374.
13. Jain, R. K., R. J. Stock, S. R. Chary, and M. Rueter. 1990. Convection and diffusion measurements using fluorescence recovery after photobleaching and video image analysis: in vitro calibration and assessment. Microvasc. Res. 39:77-93.
14. Johansson, L., and J.-E. Lofroth. 1993. Diffusion and interaction in gels and solutions, 4. Hard sphere Brownian dynamics simulations. J. Chem. Phys 98 7471-7479.
15. Johnson, E. M., and W. M. Deen. 1995. Hydraulic permeability of agarose gels. AICHE J. In press.
16. Johnson, E. M., D. A. Berk, R. K. Jain, and W. M. Deen. 1995. Diffusion and partitioning of proteins in charged agarose gels Biophys. J. 68: 1561-1568.
17. Koch, D. L., and J. F. Brady. 1986. The effective diffusivity of fibrous media. AICHE J. 32:575-591.
18. Kosar, T. F., and R. J. Phillips. 1995. Measurement of protein diffusion in dextran solutions by holographic interferometry. AICHE J. 41:701-711.
19. Laurent, T. C. 1967. Determination of the structure of agarose gels by gel chromatography. Biochim. Biophys. Acta. 136:199-205.
20. Laurent, T. C., and J. Killander. 1964. A theory of gel filtration and its experimental verification. J. Chromalogr. 14:317-330.
21. Leloup, V. M., P. Colonna, and S. G. Ring. 1990. Studies on probe diffusion and accessiblity in amylose gels. Macromolecules. 23: 862-866.
22. Mackie, W., D. B. Sellen, and J. Sutcliffe. 1978. Spectral broadening of light scattered from polysaccharide gels. Polymer. 19:9-16.
23. Moussaoui, M , M. Benlyas, and P Wahl. 1992. Diffusion of proteins in Sepharose CI-B gels. J. Chromatogr. 591:115-120.
24. Ogston, A. G. 1958. The spaces in a uniform random suspension of fibers. Faraday Soc. Trans. 54:1754-1757.
25. Ogston, A. G., B. N. Preston, and J. D. Wells. 1973. On the transport of compact particles through solutions of chain polymers. Proc. R. Soc. Lond. A. 333:297-316.
26. Oliver, J. D., S. Anderson, J. L. Troy, B. M. Brenner, and W. M. Deen. 1992. Determination of glomerular size-selectivity in the normal rat with ficoll. J. Am. Soc. Nephrol. 3:214-228.
27. Perrins, W. T., D. R. McKenzie, and R. C. McPhedran. 1979. Transport properties of regular arrays of cylinders. Proc. R. Soc. Lond. A. 369: 207-225.
28. Phillips, R. J., W. M. Deen, and J. F. Brady. 1989. Hindered transport of spherical macromolecules in fibrous membranes and gels. AICHE J. 35:1761-1769.
29. Phillips, R. J., W. M. Deen, and J. F. Brady. 1990. Hindered transport in fibrous membranes and gels: effect of solute size and fiber configuration. J. Colloid Interface Sci. 139:363-373.
30. Saltzman, W. M., M. L. Radomsky, K. J. Whaley, and R. A. Cone. 1994. Antibody diffusion in human cervical mucus. Biophys. J. 66:508-515.
31. Tanaka, T., L. O. Hocker, and G. B. Benedek. 1973. Spectrum of light scattered from a viscoelastic gel. J. Chem. Phys. 59:5151-5159.
32. Tomadakis, M. M., and S. V. Sotirchos. 1993. Transport properties of random arrays of freely overlapping cylinders with various orientation distributions. J. Chem. Phys. 98:616-626.
33. Wattenbarger, M. R , V. A. Bloomfield, Z. Bu, and P. S. Russo. 1992. Tracer diffusion of proteins in DNA solutions. Macromolecules. 25: 5263-5265.