Unambiguous structure characterization of a DNA-RNA triple helix by 15N- and 13C-filtered NOESY spectroscopy †

Biochemistry

Volumn 35, Issue 6, 1996, Pages 1733-1739

  Van Dongen, Maria J P ^a   Heus, Hans A ^a   Wymenga, Sybren S ^a   Van Der Marel, Gijs A ^b   Van Boom, Jacques H ^b   Hilbers, Cornelis W ^a  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON 13; DNA; NITROGEN 15; OLIGONUCLEOTIDE; PURINE; PYRIMIDINE; RNA;

ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; MOLECULAR INTERACTION; NUCLEAR OVERHAUSER EFFECT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; TRIPLE HELIX;

BASE SEQUENCE; CARBON ISOTOPES; DNA; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NITROGEN ISOTOPES; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; OLIGORIBONUCLEOTIDES; RNA;

EID: 0030043117     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi952002f     Document Type: Article

References (36)

1. Bax, A., & Weiss, M. A. (1986) J. Magn. Reson. 71, 571-575.
2. Burkholder, G. D., Latimer, L. J. P., & Lee, J. S. (1988) Chromosoma 97, 185-192.
3. Burkholder, G. D., Latimer, L. J. P., & Lee, J. S. (1991) Chromosoma 101, 11-18.
4. de los Santos, C., Rosen, M., & Patel, D. J. (1989) Biochemistry 28, 7282-7289.
5. Escudé, C., François, J.-C., Sun, J.-s., Ott, G., Sprinzl, M., Garestier, T., & Hélène, C. (1993) Nucleic Acids Res. 21, 5547-5553.
6. Fesik, S. W., Gampe, R. T., Jr. & Rockway, T. W. (1987) J. Magn. Reson. 74, 366-371.
7. François, J.-C., Saison-Behmoras, T., Thuong, N. T., & Hélène, C. (1989) Biochemistry 28, 9617-9619.
8. Frank-Kamenetskii, M. D., & Mirkin, S. M. (1995) Annu. Rev. Biochem. 64, 65-95.
9. Hampel, K. J., Ashley, C., & Lee, J. S. (1994) Biochemistry 33, 5674-5681.
10. Han, H., & Dervan, P. B. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 3806-3810.
11. Horne, D. A., & Dervan, P. B. (1990) J. Am. Chem. Soc. 112, 2435-2437.
12. Ing, N. H., Beekman, J. M., Kessler, D. J., Murphy, M., Jayaraman, K., Zendegui, J. G. Hogan, M. E., O'Malley, B. W., & Tsaj, M.-J. (1993) Nucleic Acids Res. 21, 2789-2796.
13. Kontaxis, G., Stonehouse, J., Laue, E. D., & Keeler, J. (1994) J. Magn. Reson. A 111, 70-76.
14. Lee, J. S., Latimer, L. J. P., Haug, B. L., Pulleyblank, D. E., Skinner, D. M., & Burkholder, G. D. (1989) Gene 82, 191-199.
15. Macaya, R., Wang, E., Schultze, P., Sklenář, V., & Feigon, J. (1992) J. Mol. Biol. 225, 755-773.
16. Marion, D., & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
17. Milligan, J. F., Groebe, D. R., Witherell, G. W., & Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
18. Mooren, M. M. W., Pulleyblank, D. E., Wijmenga, S. S., Blommers, M. J. J., & Hilbers, C. W. (1990) Nucleic Acids Res. 18, 6523-6529.
19. Nikonowicz, E. P., & Pardi, A. (1993) J. Mol. Biol. 232, 1141-1156.
20. Otting, G., & Wüthrich, K. (1989) J. Magn. Reson. 85, 586-594.
21. Otting, G., Senn, H., Wagner, G , & Wüthrich, K. (1986) J. Magn. Reson. 70, 500-505.
22. Plateau, P., & Guéron, M. (1982) J. Am. Chem, Soc. 104, 7310-7311.
23. Pvosic, T. J., & Dervan, P. B. (1990) J. Am. Chem. Soc. 112, 9428-9430.
24. Radhakrishnan, I., & Patel, D. (1993) Structure 1, 135-152.
25. Radhakrishnan, I., & Patel, D. (1994a) Structure 2, 17-32.
26. Radhakrishnan, I., & Patel, D. (1994b) J. Mol. Biol. 241, 600-619.
27. Rajagopal, P., & Feigon, J. (1989) Nature 339, 637-640.
28. Roberts, R. W., & Crothers, D. M. (1992) Science 258, 1463-1465.
29. Roy, C. (1993) Nucleic Acids Res. 21, 2845-2852.
30. Shaka, A. J., Barker, P., & Freeman, F. (1985) J. Magn. Reson. 64, 547-552.
31. Sklenář, V., & Bax, A. (1987) J. Magn. Reson. 74, 469-479.
32. Sklenář, V., & Feigon, J. (1990) Nature 345, 836-838.
33. Skoog, J. U., & Maher, L. J. (1993) Nucleic Acids Res. 21, 2131-2138.
34. Ulrich, M. J., Gray, W. J., & Ley, T. J. (1992) J. Biol. Chem. 267, 18649-18658.
35. van Boom, J. H., van der Marel, G. A., Westerink, H. P., van Boeckel, C. A. A., Mellema, J. R., Altona, C., Hilbers, S. W., Haasnoot, C. A. G., de Bruin, S. H., & Berendsen, R. G. (1983) Cold Spring Harbor Symp. Quant. Biol. 47, 403-409.
36. Wijmenga, S. S., Heus, H. A., van de Ven, F. J. M., & Hilbers, C. W. (1994) in NMR of Biological Macromolecules (Stassinopoulou, C. I., Ed.) Nato ASI Series, Vol. 87, pp 307-322, Springer, Berlin, Germany.