Nitrobacter winogradskyi cytochrome c oxidase genes are organized in a repeated gene cluster

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 69, Issue 4, 1996, Pages 305-315

  Berben, Gilbert ^a  

^a WALLOON AGRICULTURAL RESEARCH CENTRE   (Belgium)

Author keywords

aa3 type cytochrome c oxidase; Heme biosynthesis; Heme O synthase; Nitrification; Nitrobacter winogradskyi; Proton pumping

Indexed keywords

BACTERIAL DNA; BACTERIAL ENZYME; CYTOCHROME C OXIDASE; FERROCHELATASE;

ARTICLE; BACTERIAL GENE; DNA SEQUENCE; ENZYME SUBUNIT; GENE CLUSTER; GENE ISOLATION; GENE LIBRARY; GENE NUMBER; NITROBACTER; NONHUMAN; PRIORITY JOURNAL; RHIZOBIACEAE; SEQUENCE HOMOLOGY;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NITROBACTER WINOGRADSKYI; PROTEOBACTERIA; RHIZOBIACEAE;

EID: 0030036468     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/bf00399619     Document Type: Article

References (50)

1. 3) in the cyanobacteriumSynechocystis PCC 6803. Biochem. Biophys. Res. Commun. 191: 9-17
2. Alge D, Schmetterer G & Peschek GA (1994) The gene encoding cytochrome-c oxidase subunit I from Synechocystis PCC6803. Gene 138: 127-132
3. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA & Struhl K (1995) Current protocols in molecular biology. John Wiley & Sons, New York
4. Bergmann DJ, Arciero DM & Hooper AB (1994) Organization of the hao gene cluster of Nitrosomonas europaea: genes for two tetraheme c cytochromes. J. Bacteriol. 176: 3148-3153
5. Bock E & Koops H-P (1992) The genus Nitrobacter and related genera. In: Balows A, Trüper HG, Dworkin M, Harder W & Schleifer K-H (Ed) The prokaryotes, 2nd ed. (pp 2302-2309). Springer-Verlag, New York
6. Bock E, Koops H-P, Ahlers B & Harms H (1992) Oxidation of inorganic compounds as energy source. In: Balows A, Trüper HG, Dworkin M, Harder W & Schleifer K-H (Ed) The prokaryotes, 2nd ed. (pp 414-430). Springer-Verlag, New York
7. 3 branch of the Bradyrhizobium japonicum respiratory chain. Mol. Microbiol. 4: 2147-2157
8. Boyer HW & Roulland-Dussoix D (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J. Mol. Biol. 41: 459-472
9. Calhoun MW, Thomas JW & Gennis RB (1994) The cytochrome oxidase superfamily of redox-driven proton pumps. Trends Biochem. Sci. 19: 325-330
10. 3 of Rhodobacter sphaeroides as a model for mitochondrial cytochrome c oxidase. J. Biol. Chem. 267: 24273-24278
11. Cao J, Shapleigh J, Gennis R, Revzin A & Ferguson-Miller S (1991) The gene encoding cytochrome c oxidase subunit II from Rhodobacter sphaeroides; comparison of the deduced amino acid sequence with sequences of corresponding peptides from other species. Gene 101: 133-137
12. Castresana J, Lübben M, Saraste M & Higgins DG (1994) Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. EMBO J. 13: 2516-2525
13. Chaudhry GR, Suzuki I & Lees H (1980) Cytochrome oxidase of Nitrobacter agilis: isolation by hydrophobic interaction chromatography. Can. J. Microbiol. 26: 1270-1274
14. Chepuri V & Gennis RB (1990) The use of gene fusions to determine the topology of all of the subunits of the cytochrome o terminal oxidase complex of Escherichia coli. J. Biol. Chem. 265: 12978-12986
15. 3-type family of cytochrome c oxidases. J. Biol. Chem. 265: 11185-11192
16. 3 gene regulation in members of the family Rhizobiaceae: comparison of copper and oxygen effects in Bradyrhizobium japonicum and Rhizobium tropici. Appl. Environ. Microbiol. 60: 141-148
17. 3 of Bradyrhizobium japonicum. Nucl. Acids Res. 18: 6143
18. Garcia-Horsman JA, Barquera B, Rumbley J, Ma J & Gennis RB (1994) The superfamily of heme-copper respiratory oxidases. J. Bacteriol. 176: 5587-5600
19. Hooper AB (1989) Biochemistry of the nitrifying lithoautotrophic bacteria. In: Schlegel HG & Bowien B (Ed) Autotrophic bacteria, (pp 239-265). Science Tech Publishers, Madison, Wisconsin
20. Ishizuka M, Machida K, Shimada S, Mogi A, Tsuchiya T, Ohmori T, Souma Y, Gonda M & Sone N (1990) Nucleotide sequence of the gene coding for four subunits of cytochrome c oxidase from the thermophilic bacterium PS3. J. Biochem. 108: 866-873
21. Kahn D, Batut J, Daveran ML & Fourment J (1993) Structure and regulation of the fixNOQP operon from Rhizobium meliloti. In: Palacios R, Mora J, Newton WE (Ed) New horizons in nitrogen fixation, (p. 474). Kluwer Academic Publishers, Dordrecht, The Netherlands
22. Kelly M, Lappalainen P, Talbo G, Haltia T, van der Oost J & Saraste M (1993) Two cysteines, two histidines and one methionine are ligands of a binuclear purple copper center. J. Biol. Chem. 268: 16781-16787
23. Kirstein K & Bock E (1993) Close genetic relationship between Nitrobacter hamburgensis nitrite oxidoreductase and Escherichia coli nitrate reductases. Arch. Microbiol. 160: 447-453
24. A domain: identification of substrate-binding residues in cytochrome c oxidase. Biochemistry 34: 5824-5830
25. Meincke M, Bock E, Kastrau D & Kroneck PMH (1992) Nitrite oxidoreductase from Nitrobacter hamburgensis: redox centers and their catalytic role. Arch. Microbiol. 158: 127-131
26. Mogi T, Saiki K & Anraku Y (1994) Biosynthesis and functional role of haem O and haem A. Mol. Microbiol. 14: 391-398
27. Navarro E, Simonet P, Normand P & Bardin R (1992) Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer. Arch. Microbiol. 157: 107-115
28. Nobrega MP, Nobrega FG & Tzagoloff A (1990) COX10 codes for a protein homologous to the ORF1 product of Paracoccus denitrificans and is required for the synthesis of yeast cytochrome oxidase. J. Biol. Chem. 265: 14220-14226
29. 3 in Nitrobacter winogradskyi. J. Bacteriol. 175: 4400-4404
30. Orso S, Gouy M, Navarro E & Normand P (1994) Molecular phylogenetic analysis of Nitrobacter spp. Int. J. Syst. Bacteriol. 44: 83-86
31. 3 oxidase it encodes. J. Biol. Chem. 268: 678-685
32. Raitio JM, Pispa JM, Metso T & Saraste M (1990) Are there isozymes of cytochrome c oxidase in Paracoccus denitrificans? FEBS Lett. 261: 431-435
33. Raitio M, Jalli T & Saraste M (1987) Isolation and analysis of the genes for cytochrome c oxidase in Paracoccus denitrificans. EMBO J. 6: 2825-2833
34. Robison K, Gilbert W & Church GM (1994) Large scale bacterial gene discovery by similarity search. Nature Genet. 7: 205-214
35. Saiki K, Mogi T, Hori H, Tsubaki M & Anraku Y (1993a) Identification of the functional domains in heme O synthase. J. Biol. Chem. 268: 26927-26934
36. Saiki K, Mogi T, Ogura K & Anraku Y (1993b) In vitro heme O synthesis by the cyoE gene product from Escherichia coli. J. Biol. Chem. 268: 26041-26044
37. Sambrook J, Fritsch EF & Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
38. Saraste M, Metso T, Nakari T, Jalli T, Lauraeus M & van der Oost J (1991) The Bacillus subtilis cytochrome-c oxidase. Eur. J. Biochem. 195: 517-525
39. Seewaldt E, Schleifer K-H, Bock E & Stackebrandt E (1982) The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris. Arch. Microbiol. 131: 287-290
40. Steinmüller W & Bock E (1976) Growth of Nitrobacter in the presence of inorganic matter. I. Mixotrophic growth. Arch. Microbiol. 108: 299-304
41. Steinrücke P, Steffens GCM, Panskus G, Buse G & Ludwig B (1987) Subunit II of cytochrome c oxidase from Paracoccus denitrificans. Eur. J. Biochem. 167: 431-439
42. Tano H, Ishizuka M & Sone N (1991) The cytochrome c oxidase genes in blue-green algae and characteristics of the deduced protein sequence for subunit II of the thermophilic cyanobacterium Synechococcus vulcanus. Biochem. Biophys. Res. Commun. 181: 437-442
43. Teske A, Alm E, Regan JM, Toze S, Rittmann BE & Stahl DA (1994) Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J. Bacteriol. 176: 6623-6630
44. Thöny-Meyer L, Loferer H, Ritz D & Hennecke H (1994) Bacterial genes and proteins involved in the biogenesis of c-type cytochromes and terminal oxidases. Biochim. Biophys. Acta 1187: 260-263
45. Tzagoloff A, Capitanio N, Nobrega MP & Gatti D (1990) Cytochrome oxidase assembly in yeast requires the product of COX11, a homolog of the P. denitrificans protein encoded by ORF3. EMBO J. 9: 2759-2764
46. von Heijne G (1983) Patterns of amino acids near signal-sequence cleavage sites. Eur. J. Biochem. 133: 17-21
47. Yamanaka T, Fujii K & Kamita Y (1979) Subunits of cytochrome a-type terminal oxidases derived from Thiobacillus novellus and Nitrobacter agilis. J. Biochem. 86: 821-824
48. Yamanaka T & Fukumori Y (1988) The nitrite oxidizing system of Nitrobacter winogradskyi. FEMS Microbiol. Rev. 54: 259-270
49. 3 and c. Origins of Life 14: 739-746
50. 3"-type terminal oxidase derived from Nitrobacter agilis. J. Biochem. 89: 265-273