Sequence-selective carbohydrate-DNA interaction: Dimeric and monomeric forms of the calicheamicin oligosaccharide interfere with transcription factor function

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 2, 1996, Pages 940-944

  Liu, Chen ^a   Smith, Brian M ^a   Ajito, Keiichi ^a   Komatsu, Hironori ^a   Gomez Paloma, Luigi ^a   Li, Tianhu ^a   Theodorakis, Emmanuel A ^a   Nicolaou, K C ^a   Vogt, Peter K ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

minor groove binder; transcription

Indexed keywords

CALICHEAMICIN; DNA;

ARTICLE; BINDING AFFINITY; CONFORMATIONAL TRANSITION; DNA BINDING; DNA CONFORMATION; DNA SEQUENCE; HUMAN; PRIORITY JOURNAL; TRANSCRIPTION REGULATION;

AMINOGLYCOSIDES; ANTI-BACTERIAL AGENTS; BASE SEQUENCE; CARBOHYDRATE SEQUENCE; DNA; DNA POLYMERASE II; DNA-BINDING PROTEINS; ENEDIYNES; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; OLIGODEOXYRIBONUCLEOTIDES; OLIGOSACCHARIDES; PROTEIN BINDING; STAT3 TRANSCRIPTION FACTOR; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0030034725     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.2.940     Document Type: Article

References (34)

1. Lee, M. D., Dunne, T. S., Siegel, M. M., Chang, C. C., Morton, G. O. & Borders, D. B. (1987) J. Am. Chem. Soc. 104, 3464-3466.
2. Nicolaou, K. C., Tsay, S. C., Suzuki, T. & Joyce, G. F. (1992) J. Am. Chem. Soc. 114, 7555-7557.
3. Zein, N., Sinha, A. M., McGahren, W. J. & Ellestad, G. A. (1988) Science 240, 1198-1201.
4. Nicolaou, K. C. & Dai, W. M. (1991) Angew. Chem. 30, 1387-1416.
5. De Voss, J. J., Townsend, C. A., Ding, W. D., Morton, G. O., Ellestad, G. A., Zein, N., Tabor, A. B. & Schreiber, S. L. (1990) J. Am. Chem. Soc. 112, 9669-9670.
6. Hangeland, J. J., De Voss, J. J., Health, J. A., Townsend, C. A., Ding, W. D., Ashcroft, J. S. & Ellestad, G. A. (1992) J. Am. Chem. Soc. 114, 9200-9202.
7. Aiyer, J., Danishefsky, S. J. & Crothers, D. M. (1992) J. Am. Chem. Soc. 114, 7552-7554.
8. Walker, S., Valentine, K. G. & Kahne, D. (1990) J. Am. Chem. Soc. 116, 6428-6429.
9. Walker, S., Gange, D., Gupta, V. & Kahne, D. (1994) J. Am. Chem. Soc. 116, 3197-3206.
10. Gomez-Paloma, L., Smith, J. A., Chazin, W. J. & Nicolaou, K. C. (1994) J. Am. Chem. Soc. 116, 3697-3708.
11. Uesngi, M. & Sugiura, Y. (1993) Biochemistry 32, 4622-4627.
12. Groneberg, R. D., Miyazaki, T., Stylianides, N. A., Schulze, T. J., Stahl, W., Schreiner, E. P., Suzuki, T., Iwabuchi, Y., Smith, A. L. & Nicolaou, K. C. (1993) J. Am. Chem. Soc. 115, 7593-7611.
13. Halcomb, R. L., Boyer, S. H. & Danishefsky, S. J. (1992) Angew. Chem. Int. Ed. Engl. 31, 338-340.
14. Kim, S. H., Augeri, D., Yang, D. & Kahne, D. (1994) J. Am. Chem. Soc. 116, 1766-1775.
15. Li, T., Zeng, Z., Estevez, V. A., Baldenius, K. U., Nicolaou, K. C. & Joyce, G. F. (1994) J. Am. Chem. Soc. 116, 3709-3715.
16. Ho, S. N., Boyer, S. H., Schreiber, S. L., Danishefsky, S. J. & Crabtree, G. R. (1994) Proc. Natl. Acad. Sci. USA 91, 9203-9207.
17. Nicolaou, K. C., Hummel, C. W., Nakada, M., Shibayama, K., Pitsinos, E. N., Saimoto, H., Mizuno, Y., Baldenius, K. U. & Smith, A. L. (1993) J. Am. Chem. Soc. 115, 7625-7635.
18. Nicolaou, K. C., Ajito, K., Komatsu, H., Smith, B. M., Li, T., Egan, M. G. & Gomez-Paloma, L. (1995) Angew. Chem. Int. Ed. Engl. 34, 576-578.
19. Borgmeyer, U., Nowock, J. & Sippel, A. E. (1984) Nucleic Acids Res. 12, 4295-4311.
20. Tsuchiya, Y., Hattor, M., Hayashida, K., Ishibashi, H., Okubo, H. & Sakaki, Y. (1987) Gene 57, 73-80.
21. Fowlkes, D. M., Mullis, N. T., Lomeau, C. M. & Crabtree, G. R. (1984) Proc. Natl. Acad. Sci. USA 81, 2313-2316.
22. Huber, P., Laurent, M. & Dalmon, J. (1990) J. Biol. Chem. 265, 5695-5701.
23. Zhong, Z., Wen, Z. & Darnell, J. E., Jr. (1994) Proc. Natl. Acad. Sci. USA 91, 4806-4810.
24. Wegenka, U. M., Buschmann, J., Lutticken, C. & Heinrich, P. C. (1993) Mol. Cell. Biol. 13, 276-288.
25. Hocke, G. M., Barry, D. & Fey, G. H. (1992) Mol. Cell. Biol. 12, 2282-2294.
26. Celada, A., Shiga, M., Imagava, M. & Maki, K. J. R. A. (1988) J. Immunol. 140, 3995-4002.
27. Klemsz, M. J., McKercher, S. R., Celada, A., Van Beveren, C. & Maki, R. A. (1990) Cell 61, 113-124.
28. Liu, C., Mason, W. S. & Burch, J. B. (1994) J. Virol. 68, 2286-2296.
29. Hecht, A. (1990) Ph.D. thesis (Univ. of Heidelberg, Heidelberg, Germany).
30. Zhong, Z., Wen, Z. & Darnell, J. E., Jr. (1994) Science 264, 95-98.
31. Dignam, J., Lebovitz, R. & Boeder, R. (1983) Nucleic Acids Res. 11, 1475-1489.
32. Kedzierski, W. & Porter, J. (1991) BioTechniques 10, 210-214.
33. Chiang, S.-Y., Welch, J., Rauscher, F. J., III, & Beerman, T. A. (1994) Biochemistry 33, 7033-7040.
34. Dorn, A., Affolter, M., Muller, M., Gehring, W. J. & Leupin, W. (1992) EMBO J. 11, 279-286.