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Volumn 13, Issue 1, 1996, Pages 21-30

Molecular divergence and phylogeny: Rates and patterns of cytochrome b evolution in cranes

Author keywords

crane phylogeny; cytochrome b; evolutionary rates; mitochondrial DNA

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

EID: 0030032991     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025558     Document Type: Article
Times cited : (100)

References (55)
  • 1
    • 0001062704 scopus 로고
    • Crane taxonomy as revealed by the unison call
    • J. C. LEWIS, ed. Oklahoma State University Publishing and Printing Dept. Stillwater
    • ARCHIBALD, G. W. 1976. Crane taxonomy as revealed by the unison call. Pp. 225-251 in J. C. LEWIS, ed. Proceedings of the international crane workshop. Oklahoma State University Publishing and Printing Dept. Stillwater.
    • (1976) Proceedings of the International Crane Workshop , pp. 225-251
    • Archibald, G.W.1
  • 3
    • 0028451358 scopus 로고
    • Why one-kilobase sequences from mitochondrial DNA fail to solve the hoatzin phylogenetic enigma
    • AVISE, J. C., W. S. NELSON, and C. G. SIBLEY. 1994. Why one-kilobase sequences from mitochondrial DNA fail to solve the hoatzin phylogenetic enigma. Mol. Phyl. Evol. 3:175-184.
    • (1994) Mol. Phyl. Evol. , vol.3 , pp. 175-184
    • Avise, J.C.1    Nelson, W.S.2    Sibley, C.G.3
  • 4
    • 0001761899 scopus 로고
    • Evolution and population genetics of organelle genes: Mechanisms and models
    • R. K. SELANDER, A. G. CLARK, and T. S. WHITTAM, eds. Sinauer, Sunderland, Mass.
    • BIRKY, C. W., JR. 1991. Evolution and population genetics of organelle genes: mechanisms and models. Pp. 112-134 in R. K. SELANDER, A. G. CLARK, and T. S. WHITTAM, eds. Evolution at the molecular level. Sinauer, Sunderland, Mass.
    • (1991) Evolution at the Molecular Level , pp. 112-134
    • Birky Jr., C.W.1
  • 5
    • 0022534918 scopus 로고
    • Rates of DNA sequence evolution differ between taxonomic groups
    • BRITTEN, R. J. 1986. Rates of DNA sequence evolution differ between taxonomic groups. Science 231:1393-1398.
    • (1986) Science , vol.231 , pp. 1393-1398
    • Britten, R.J.1
  • 6
    • 0019933524 scopus 로고
    • Novel features of animal mtDNA evolution as shown by sequences of two rat cytochrome oxidase subunit II genes
    • BROWN, G., and M. SIMPSON. 1982. Novel features of animal mtDNA evolution as shown by sequences of two rat cytochrome oxidase subunit II genes. Proc. Natl. Acad. Sci. USA 79:3246-3250.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 3246-3250
    • Brown, G.1    Simpson, M.2
  • 7
    • 0027979994 scopus 로고
    • Phylogeny of Greya (Lepidoptera: Prodoxidae), based on nucleotide sequence variation in mitochondrial cytochrome oxidase I and II: congruence with morphological data
    • BROWN, J. M., O. PELLMYR, J. N. THOMPSON, and R. G. HARRISON. 1994. Phylogeny of Greya (Lepidoptera: Prodoxidae), based on nucleotide sequence variation in mitochondrial cytochrome oxidase I and II: congruence with morphological data. Mol. Biol. Evol. 11:128-141.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 128-141
    • Brown, J.M.1    Pellmyr, O.2    Thompson, J.N.3    Harrison, R.G.4
  • 8
    • 0001947514 scopus 로고
    • Evolution of animal mitochondrial DNA
    • M. NEI and R. K. KOEHN, eds. Sinauer, Sunderland, Mass.
    • BROWN, W. M. 1983. Evolution of animal mitochondrial DNA. Pp. 62-88 in M. NEI and R. K. KOEHN, eds. Evolution of genes and proteins. Sinauer, Sunderland, Mass.
    • (1983) Evolution of Genes and Proteins , pp. 62-88
    • Brown, W.M.1
  • 9
    • 0020328686 scopus 로고
    • Mitochondrial DNA sequences of primates: Tempo and mode of evolution
    • BROWN, W. M., E. M. PRAGER, A. WANG, and A. C. WILSON. 1982. Mitochondrial DNA sequences of primates: tempo and mode of evolution. J. Mol. Evol. 18:225-239.
    • (1982) J. Mol. Evol. , vol.18 , pp. 225-239
    • Brown, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 10
    • 0002685918 scopus 로고
    • Parsimony and phylogenetic inference using DNA sequences: Some methodological strategies
    • M. M. MIYAMOTO and J. CRACRAFT, eds. Oxford University Press, New York, NY
    • CRACRAFT, J., and K. HELM-BYCHOWSKI. 1991. Parsimony and phylogenetic inference using DNA sequences: some methodological strategies. Pp. 184-220 in M. M. MIYAMOTO and J. CRACRAFT, eds. Phylogenetic analysis of DNA sequences. Oxford University Press, New York, NY.
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 184-220
    • Cracraft, J.1    Helm-Bychowski, K.2
  • 11
    • 0025343497 scopus 로고
    • Sequence and gene order of the chicken mitochondrial genome: A novel gene order in higher vetebrates
    • DESJARDINS, P., and R. MORAIS. 1990. Sequence and gene order of the chicken mitochondrial genome: a novel gene order in higher vetebrates. J. Mol. Biol. 212:599-634.
    • (1990) J. Mol. Biol. , vol.212 , pp. 599-634
    • Desjardins, P.1    Morais, R.2
  • 12
    • 0026957847 scopus 로고
    • Allozyme evidence for crane systematics and polymorphisms within populations of Sandhill, Sarus, Siberian, and Whooping cranes
    • DESSAUER, H. C., G. F. GEE, and J. S. ROGERS. 1992. Allozyme evidence for crane systematics and polymorphisms within populations of Sandhill, Sarus, Siberian, and Whooping cranes. Mol. Phyl. Evol. 1:279-288.
    • (1992) Mol. Phyl. Evol. , vol.1 , pp. 279-288
    • Dessauer, H.C.1    Gee, G.F.2    Rogers, J.S.3
  • 13
    • 0026035060 scopus 로고
    • Mitochondrial resolution of a deep branch in the genealogical tree for perching birds
    • EDWARDS, S. V., P. ARCTANDER, and A. C. WILSON. 1991. Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proc. R. Soc. Lond. B. Biol. Sci. 243:99-107.
    • (1991) Proc. R. Soc. Lond. B. Biol. Sci. , vol.243 , pp. 99-107
    • Edwards, S.V.1    Arctander, P.2    Wilson, A.C.3
  • 14
    • 0021581577 scopus 로고
    • Distance methods for inferring phylogenies: A justification
    • FELSENSTEIN, J. 1984. Distance methods for inferring phylogenies: a justification. Evolution 38:16-24.
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 15
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • _. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-526.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-526
  • 16
    • 85035157775 scopus 로고
    • Distributed by the author. Department of Genetics, University of Washington, Seattle
    • _. 1992. PHYLIP (phylogeny inference package) version 3.5. Distributed by the author. Department of Genetics, University of Washington, Seattle.
    • (1992) PHYLIP (Phylogeny Inference Package) Version 3.5
  • 17
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • FITCH, W. M., and E. MARGOLIASH. 1967. Construction of phylogenetic trees. Science 155:279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 18
    • 0020528412 scopus 로고
    • What is a conservative substitution?
    • FRENCH, S., and B. ROBSON. 1983. What is a conservative substitution? J. Mol. Evol. 19:171-175.
    • (1983) J. Mol. Evol. , vol.19 , pp. 171-175
    • French, S.1    Robson, B.2
  • 19
    • 0038091654 scopus 로고
    • 18S rRNA sequences and amniote phylogeny: Reply to Marshall
    • HEDGES, S. B., and L. R. MAXSON. 1992. 18S rRNA sequences and amniote phylogeny: reply to Marshall. Mol. Biol. Evol. 9:374-377.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 374-377
    • Hedges, S.B.1    Maxson, L.R.2
  • 20
    • 0028362880 scopus 로고
    • Application and accuracy of molecular phylogenies
    • HILLIS, D. M., J. P. HULSENBECK, and C. W. CUNNINGHAM. 1994. Application and accuracy of molecular phylogenies. Science 264:671-677.
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Hulsenbeck, J.P.2    Cunningham, C.W.3
  • 21
    • 0020960762 scopus 로고
    • Transitions and transversions in evolutionary descent: An approach to understanding
    • HOLMQUIST, R. 1983. Transitions and transversions in evolutionary descent: an approach to understanding. J. Mol. Evol. 19:134-144.
    • (1983) J. Mol. Evol. , vol.19 , pp. 134-144
    • Holmquist, R.1
  • 22
    • 0024318517 scopus 로고
    • Evolutionary conservation of protein regions in the protonmotive cytochrome b and their possible roles in redox catalysis
    • HOWELL, N. 1989. Evolutionary conservation of protein regions in the protonmotive cytochrome b and their possible roles in redox catalysis. J. Mol. Evol. 29:157-169.
    • (1989) J. Mol. Evol. , vol.29 , pp. 157-169
    • Howell, N.1
  • 23
    • 0023776004 scopus 로고
    • Mutational analysis of the mouse mitochondrial cytochrome b gene
    • HOWELL, N., and K. GILBERT. 1988. Mutational analysis of the mouse mitochondrial cytochrome b gene. J. Mol. Biol. 203: 607-617.
    • (1988) J. Mol. Biol. , vol.203 , pp. 607-617
    • Howell, N.1    Gilbert, K.2
  • 24
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene of mammals
    • IRWIN, D. M., T. D. KOCHER, and A. C. WILSON. 1991. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32:128-144.
    • (1991) J. Mol. Evol. , vol.32 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 25
    • 0028223964 scopus 로고
    • The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: Sequence divergence in Hymenoptera may be associated with nucleotide content
    • JERMIIN, L. S., and R. H. CROZIER. 1994. The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content. J. Mol. Evol. 38:282-294.
    • (1994) J. Mol. Evol. , vol.38 , pp. 282-294
    • Jermiin, L.S.1    Crozier, R.H.2
  • 26
    • 0023516968 scopus 로고
    • Transitions, transversions, and the molecular clock
    • JUKES, T. H. 1987. Transitions, transversions, and the molecular clock. J. Mol. Evol. 26:87-98.
    • (1987) J. Mol. Evol. , vol.26 , pp. 87-98
    • Jukes, T.H.1
  • 27
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. MUNRO, ed. Academic Press, NY
    • JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. N. MUNRO, ed. Mammalian protein metabolism. Academic Press, NY.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 28
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitution through comparative study of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative study of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 29
    • 0003132888 scopus 로고
    • The neutral theory of molecular evolution
    • M. NEI and R. K. KOEHN, eds. Sinauer, Sunderland, Mass.
    • _. 1983. The neutral theory of molecular evolution. Pp. 208-233 in M. NEI and R. K. KOEHN, eds. Evolution of genes and proteins. Sinauer, Sunderland, Mass.
    • (1983) Evolution of Genes and Proteins , pp. 208-233
  • 31
    • 0014831951 scopus 로고
    • Evolution of higher-organism DNA
    • KOHNE, D. E. 1970. Evolution of higher-organism DNA. Q. Rev. Biophys. 33:327-375.
    • (1970) Q. Rev. Biophys. , vol.33 , pp. 327-375
    • Kohne, D.E.1
  • 32
    • 0027489634 scopus 로고
    • Pathways of lysozyme evolution inferred from the sequences of cytochrome b in birds
    • KORNEGAY, J. R., T. D. KOCHER, L. A. WILLIAMS, and A. C. WILSON. 1993. Pathways of lysozyme evolution inferred from the sequences of cytochrome b in birds. J. Mol. Evol. 37:367-379.
    • (1993) J. Mol. Evol. , vol.37 , pp. 367-379
    • Kornegay, J.R.1    Kocher, T.D.2    Williams, L.A.3    Wilson, A.C.4
  • 33
    • 0000295431 scopus 로고
    • Phylogenetic relationships among cranes (Gruiformes: Gruidae) based on DNA hybridization
    • KRAJEWSKI, C. 1989. Phylogenetic relationships among cranes (Gruiformes: Gruidae) based on DNA hybridization. Auk 106:603-618.
    • (1989) Auk , vol.106 , pp. 603-618
    • Krajewski, C.1
  • 34
    • 0025139899 scopus 로고
    • Relative rates of single-copy DNA evolution in cranes
    • _. 1990. Relative rates of single-copy DNA evolution in cranes. Mol. Biol. Evol. 7:65-73.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 65-73
  • 35
    • 0028155393 scopus 로고
    • Phylogeny of cranes (Gruiformes: Gruidae) based on cytochrome-b DNA sequences
    • KRAJEWSKI, C., and J. W. FETZNER, JR. 1994. Phylogeny of cranes (Gruiformes: Gruidae) based on cytochrome-b DNA sequences. Auk 111:351-365.
    • (1994) Auk , vol.111 , pp. 351-365
    • Krajewski, C.1    Fetzner Jr., J.W.2
  • 36
    • 0028800524 scopus 로고
    • Mitochondrial DNA relationships within the Sarus Crane species group (Gruiformes: Gruidae)
    • in press
    • KRAJEWSKI, C., and T. C. WOOD. 1995. Mitochondrial DNA relationships within the Sarus Crane species group (Gruiformes: Gruidae). Emu. (in press).
    • (1995) Emu.
    • Krajewski, C.1    Wood, T.C.2
  • 39
    • 0027483517 scopus 로고
    • Structure and evolution of opossum, guinea pig, and porcupine cytochrome b genes
    • MA, D.-P., A. ZHARKIKH, D. GRAUR, J. L. VANDEBERG, and W.-H. LI. 1993. Structure and evolution of opossum, guinea pig, and porcupine cytochrome b genes. J. Mol. Evol. 36: 327-334.
    • (1993) J. Mol. Evol. , vol.36 , pp. 327-334
    • Ma, D.-P.1    Zharkikh, A.2    Graur, D.3    Vandeberg, J.L.4    Li, W.-H.5
  • 40
    • 0028156627 scopus 로고
    • Shortcomings of the cytochrome b gene as a molecular marker
    • MEYER, A. 1994. Shortcomings of the cytochrome b gene as a molecular marker. Trends Ecol. Evol. 9:278-280.
    • (1994) Trends Ecol. Evol. , vol.9 , pp. 278-280
    • Meyer, A.1
  • 41
    • 0023480940 scopus 로고
    • Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
    • MORITZ, C., T. E. DOWLING, and W. M. BROWN. 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18: 269-292.
    • (1987) Annu. Rev. Ecol. Syst. , vol.18 , pp. 269-292
    • Moritz, C.1    Dowling, T.E.2    Brown, W.M.3
  • 43
    • 0001884732 scopus 로고
    • Relative efficiencies of different tree-making methods for molecular data
    • M. M. MIYAMOTO and J. CRACRAFT, eds. Oxford University Press, New York, NY
    • _. 1991. Relative efficiencies of different tree-making methods for molecular data. Pp. 90-128 in M. M. MIYAMOTO and J. CRACRAFT, eds. Phylogenetic analysis of DNA sequences. Oxford University Press, New York, NY.
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 90-128
  • 44
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • NEI, M., and T. GOJOBORI. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 45
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 47
    • 0024724926 scopus 로고
    • DNA hybridization in animal taxonomy: A critique from first principles
    • SPRINGER, M., and C. KRAJEWSKI. 1989. DNA hybridization in animal taxonomy: a critique from first principles. Q. Rev. Biol. 64:291-318.
    • (1989) Q. Rev. Biol. , vol.64 , pp. 291-318
    • Springer, M.1    Krajewski, C.2
  • 49
    • 0001140522 scopus 로고
    • Phylogeny reconstruction
    • D. M. HILLIS and C. MORITZ, eds. Sinauer, Sunderland, Mass.
    • SWOFFORD, D. L., and G. J. OLSEN. 1990. Phylogeny reconstruction. Pp. 411-501 in D. M. HILLIS and C. MORITZ, eds. Molecular systematics. Sinauer, Sunderland, Mass.
    • (1990) Molecular Systematics , pp. 411-501
    • Swofford, D.L.1    Olsen, G.J.2
  • 50
    • 0011256943 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • TAMURA, K., and M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 6: 447-459.
    • (1993) Mol. Biol. Evol. , vol.6 , pp. 447-459
    • Tamura, K.1    Nei, M.2
  • 51
    • 0028028683 scopus 로고
    • The largemouth bass cytochrome b gene
    • WHITMORE, D. H., T. H. THAI, and C. M. CRAFT. 1994. The largemouth bass cytochrome b gene. J. Fish Biol. 44:637-645.
    • (1994) J. Fish Biol. , vol.44 , pp. 637-645
    • Whitmore, D.H.1    Thai, T.H.2    Craft, C.M.3
  • 54
    • 0040546341 scopus 로고
    • Phenetic relationships within the family Gruidae
    • WOOD, D. S. 1979. Phenetic relationships within the family Gruidae. Wilson Bull. 91:384-399.
    • (1979) Wilson Bull. , vol.91 , pp. 384-399
    • Wood, D.S.1
  • 55
    • 0000378875 scopus 로고
    • Evidence for higher rates of nucleotide substitution in rodents than in man
    • WU, C.-I, and W.-H. LI. 1985. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA 82:1741-1745.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 1741-1745
    • Wu, C.-I.A.1    Li, W.-H.2


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