Effects of circular permutation on the cis-cleavage reaction of a hepatitis delta virus ribozyme: Application to trans-acting ribozyme design

Biochemistry

Volumn 35, Issue 1, 1996, Pages 124-131

  Lai, Yen Chein ^a,b   Lee, Jing Yu ^a   Liu, Huey Juan ^a   Lin, Jung Yaw ^b   Wu, Huey Nan ^a  

^a INSTITUTE OF MOLECULAR BIOLOGY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME;

AMINO ACID SEQUENCE; ARTICLE; AUTOLYSIS; BINDING SITE; CIRCULAR DICHROISM; ENZYME INACTIVATION; ENZYME MECHANISM; ENZYME SUBSTRATE; HEPATITIS DELTA VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE; TRANSACTIVATION;

BASE SEQUENCE; DNA PRIMERS; HEPATITIS DELTA VIRUS; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; POLYMERASE CHAIN REACTION; RNA, CATALYTIC; RNA, VIRAL; TEMPLATES, GENETIC; TIME FACTORS;

DELTA VIRUS; HEPATITIS DELTA VIRUS;

EID: 0030032613     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi951856x     Document Type: Article

References (29)

1. Been, M., Perrotta, A. T., & Rosenstein, S. P. (1992) Biochemistry 31, 11843-44852.
2. Branch, A. D., & Robertson, H. D. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 10163-10167.
3. Cheong, C., Varani, G., & Tinoco, I., Jr. (1990) Nature (London) 346, 680-682.
4. Fedor, M. J., & Uhlenbeck, O. C. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 1668-1672.
5. Gott, J. M., Pan, T., LeCuyer, K. A., & Uhlenbeck, O. C. (1993) Biochemistry 32, 13399-13404.
6. Herschlag, D., & Cech, T. R. (1990) Biochemistry 29, 10159-10171.
7. Kawakami, J., Kummar, P. K. R., Suh, Y. A., Nishikawa, F., Kawakami, K., Taira, K., Ohtsuka, E., & Nishikawa, S. (1993) Eur. J. Biochem. 217, 29-36.
8. Kummar, P. K. R., Suh, Y. A., Miyashiro, H., Nishikawa, F., Kawakami, J., Taira, K., & Nishikawa, S. (1992) Nucleic Acids Res. 20, 3919-3924.
9. Kummar, P. K. R., Taira, K., & Nishikawa, S. (1994) Biochemistry 33, 583-592.
10. Nelson, J. R., & Tinoco, I., Jr. (1982) Biochemistry 21, 5289-5295.
11. Pan, T., & Uhlenbeck, O. C. (1993) Gene 125, 111-114.
12. Pan, T., & Zhong, K. (1994) Biochemistry 33, 14207-14212.
13. Pan, T., Gutell, R. R., & Uhlenbeck, O. C. (1991) Science 254, 1361-1364.
14. Perrotta, A. T., & Been, M. (1990) Nucleic Acids Res. 23, 6821-6827.
15. Perrotta, A. T., & Been, M. (1991) Nature (London) 350, 434-436.
16. Perrotta, A. T., & Been, M. (1992) Biochemistry 31, 16-21.
17. Perrotta, A. T., & Been, M. (1993) Nucleic Acids Res. 21, 3959-3963.
18. Puttaraju, M., Perrotta, A. T., & Been, M. D. (1993) Nucleic Acids Res. 21, 4253-4258
19. Sanger, F., Nicklen, S., & Coulson, A. R. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 1074-1078.
20. Sharmeen, L., Kuo, M. Y. P., Dinter-Gottlieb, G., & Taylor, J. (1988) J. Virol. 62, 2674-2679.
21. Suh, Y. A., Kumar, P. K. R., Taira, K., & Nishikawa, S. (1993) Nucleic Acids Res. 21, 3277-3280.
22. Tanner, N. K., Schaff, S., Thill, G., Petit-Koskas, E., Crain-Denoyelle, A.-M., & Westhof, E. (1994) Current Biol. 4, 488-498.
23. Thill, G., Vasseur, M., & Tanner, N. K. (1993) Biochemistry 32, 4254-4262.
24. Walker, A. E., Turner, D. H., Kim, J., Lyttle, M. H., Muller, P., Mathews, D. H., & Zuker, M. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 9218-9222.
25. Wu, H. N., & Lai, M. M. C (1990) Mol. Cell. Biol. 10, 5575-5579.
26. Wu, H. N., & Huang, Z. S. (1992) Nucleic Acids Res. 20, 5937-5941.
27. Wu, H. N., Lin, Y. J., Lin, F. P., Makino, S., Chang, M. F., & Lai, M. M. C. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 1831-1835.
28. Wu, H. N., Wang, Y. J., Hung, C. F., Lee, H. J., & Lai, M. M. C. (1992) J. Mol. Biol. 223, 233-245.
29. Wu, H. N., Lee, J. Y., Huang, H. W., Huang, Y. S., & Hsueh, T. G. (1993) Nucleic Acids Res. 21, 4193-4199.