Potential RNA binding proteins in Saccharomyces cerevisiae identified as suppressors of temperature-sensitive mutations in NPL3

Genetics

Volumn 142, Issue 1, 1996, Pages 103-115

  Henry, Michael ^a   Borland, Christina Z ^a,b   Bossie, Mark ^a,c   Silver, Pamela A ^a  

^a DANA FARBER CANCER INSTITUTE   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c PFIZER INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL RNA; RNA BINDING PROTEIN;

ALLELE; ARTICLE; FUNGUS MUTATION; GENE EXPRESSION REGULATION; GENE REPRESSION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROCESSING; PROTEIN TRANSPORT; RNA PROCESSING; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; TEMPERATURE SENSITIVE MUTANT;

ALLELES; AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; DNA, FUNGAL; FUNGAL PROTEINS; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEAR PROTEINS; RNA-BINDING PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SUPPRESSION, GENETIC; TEMPERATURE;

FUNGI; SACCHAROMYCES CEREVISIAE; VERTEBRATA;

EID: 0030031664     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (70)

1. ADAM, S. A., T. NAKAGAWA, M. S. SWANSON, T. K. WOODRUFF and G. DREYFUSS, 1986 mRNA polyadenylate-binding protein: gene isolation and identification of a ribonucleoprotein consensus sequence. Mol. Cell. Biol. 6: 2932-2943.
2. ALTSCHUL, S., W. GISH, W. MILLER, E. MYERS and D. LIPMAN, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
3. AMBERG, D. C., A. L. GOLDSTEIN and C. N. COLE, 1992 Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA. Genes Dev. 6: 1173-1189
4. AMERO, S. A., G. RAYCHAUDHURI, C. L. CASS, W.J. VAN VENROOIJ, W. J. HABETS et al., 1992 Independent deposition of heterogeneous nuclear ribonucleoprotein particles at sites of transcription. Proc. Natl. Acad. Sci USA 89: 8409-8413.
5. ANDERSON, J. T., S. M. WILSON, K. V. DATAR and M. S. SWANSON, 1993 NAB2: a yeast nuclear polyadenylated RNA-binding protein essential for cell viability. Mol. Cell. Biol. 13: 2730-2741.
6. BANDZIULIS, R. J., M. S. SWANSON and G. DREYFUSS, 1989 RNA-binding proteins as developmental regulators. Genes Dev. 3: 431-437.
7. BASERGA, S. J., and J. A. STEITZ, 1993 The diverse world of ribonucleoproteins, pp. 359-381 in The RNA World, edited by R. F. GESTELAND, and J. F. ATKINS. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
8. BIAMONTI, G., M. BUVOLI, M. T. BASSI, C. MORANDI, F. COBIANCHI et al., 1989 Isolation of an active gene encoding human hnRNP protein A1: evidence for alternative splicing. J. Mol. Biol. 207: 491-503.
9. BIRNEY, E., S. KUMAR and A. R. KRAINER, 1993 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res. 21: 5803-5816.
10. BOEKE, J. D., R. LACROUTE and G. R. FINK, 1984 A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast; 5-fluoro orotic acid resistance. Mol. Gen. Genet. 197: 345-347.
11. BONNEAUD, N., L. MINVIELLE-SEBASTIA, C. CULLIN and F. LACROUTE, 1994 Cellular localization of RNA14p and RNA15p, two yeast proteins involved in mRNA stability. J. Cell Sci. 107: 913-921.
12. BOSSIE, M. A., C. DEHORATIUS, G. BARCELO and P. SILVER, 1992 A mutant nuclear protein with similarity to RNA binding proteins interferes with nuclear import in yeast. Mol. Biol. Cell 3: 875-893.
13. BURD, C. G., and G. DREYFUSS, 1994 RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13: 1197-1204.
14. BURD, C. G., M. S. SWANSON, M. GORLACH and G. DREYFUSS, 1989 Primary structures of the heterogeneous nuclear ribonucleoprotein A2, B1, and C2 proteins: a diversity of RNA binding proteins is generated by small peptide inserts. Proc. Natl. Acad. Sci. USA 86: 9788-9792.
15. BUVOLI, M., G. BIAMONTI, P. TSOULFAS, M. T. BASSI, A. GHETTI et al., 1988 cDNA cloning of human hnRNF A1 reveals the existance of multiple mRNA isoforms. Nucleic Acids Res. 16: 3751-3770.
16. CAIZERGUES-FERRER, M., P. MARIOTTINI, C. CURIE, B. LAPEYRE, F. GAS et al., 1989 Nucleolin from Xenopus laevis: cDNA cloning and expression during development. Genes Dev. 3: 324-333.
17. CHOI, Y. D., and G. DREYFUSS, 1984 Isolation of the heterogeneous nuclear RNA-ribonucleoprotein complex (hnRNP): a unique supramolecular assembly. Proc. Natl. Acad. Sci. USA 81; 7471-7475.
18. CHUNG, S. Y., and J. WOOLEY, 1980 Set of novel, conserved proteins fold pre-messenger RNA into ribonucleosomes. Proteins 1: 195-210
19. COBIANCHI, F., D. N. SENGUPTA, B. Z. ZMUDZKA and S. H. WILSON, 1986 Structure of rodent helix-destabilizing protein revealed by cDNA cloning. J. Biol Chem 261: 3536-3543.
20. DREYFUSS, G., 1986 Structure and function of nuclear and cytoplasmic ribonucleoprotein particles. Annu. Rev. Cell Biol. 2: 459-498.
21. DREYFUSS, G., M. J. MATUNIS, S. PIÑOL-ROMA and C. G. BURD, 1993 hnRNP Proteins and the biogenesis of mRNA. Annu. Rev. Biochem. 62: 289-321.
22. ELLIS, E. M., and G. A. REID, 1993 The Saccharomyces cerevisiae MTS1 gene encodes a putative RNA-binding protein involved in mitochondrial protein targeting. Gene 132: 175-183.
23. ENGEBRECHT, J., K. VOELKEL-MEIMAN and G. S. ROEDER, 1991 Meiosis-specific RNA splicing in yeast. Cell 66: 1257-1268.
24. ETZERODT, M., R. VIGNALI, G. CILIBERTO, D. SCHERLY, W. MATTAJ et al., 1988 Structure and expression of a Xenopus gene encoding the snRNP protein (U1 70K). EMBO J. 7: 4311-4321.
25. EVAN, G. I., G. K. LEWIS, G. RAMSAY and J. M. BISHOP, 1985 Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product. Mol. Cell. Biol. 5: 3610-3616.
26. FLACH, J., M. BOSSIE, J. VOGEL, A. CORBETT, T. JINKS et al., 1994 A yeast RNA binding protein shuttles between the nucleus and the cytoplasm. Mol. Cell. Biol. 14: 8399-8407.
27. GE, H., and J. L. MANLEY, 1990 A protein factor, ASF, controls cell specific alternate splicing of SV40 early pre-mRNA in vitro. Cell 62: 25-34.
28. GIETZ, D., A. ST. JEAN, R. A. WOODS and R. H. SCHIESTL, 1992 Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20: 1425.
29. GRANGE, T , C MARTINS DE SA, J. ODDOS and R. PICTET, 1987 Human MRNA polyadenylate binding protein: evolutionary conservation of a nucleic acid binding motif. Nucleic Acids Res. 15: 4711-4787.
30. GUTHRIE, C., 1991 Messenger RNA splicing in yeast, clues to why the spliceosome is a ribonucleoprotein. Science 253: 157-163.
31. HABETS, W. J., P. T. G. SILLEKENS, M. H. HOET, J. A. SCHALKEN, A. J. M. ROEBROEK et al., 1987 Analysis of a cDNA clone expressing a human autoimmune antigen: full-length sequence of the U2 small nuclear RNA-associated B antigen. Proc. Natl. Acad Sci. USA 84: 2421-2425.
32. HIGGINS, D. G., and P. M. SHARP, 1988 CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73: 237-244.
33. HILL, J. E., A. M. MYERS, T. J. KOERNER and A. TZAGOLOFF, 1986 Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2: 163-167.
34. ITO, H., Y. FUKADO, K. MURATA and A. KIMURA, 1983 Transformation of yeast cells with alkali cations. J. Bacteriol. 153: 163-168.
35. KADOWAKI, T., S. CHEN, M. HITOMI, E. JACOBS, C. KUMAGAI et al., 1994 Isolation and characterization of Saccharomyces cerevisiae mRNA transport-defective (mtr) mutants. J. Cell Biol. 126: 649-659.
36. KASSIR, Y., and G. SIMCHEN, 1991 Monitoring meiosis and sporulation in Saccharomyces cerevisiae, pp. 94-110 in Methods in Enzymology, edited by J. N. ABELSON, and M. I. SIMON. Academic Press, San Diego, CA.
37. KAY, B. K., R. K. SAWHNEY and S. H. WILSON, 1990 Potential for two isoforms of the A1 ribonucleoprotein in Xenopus laevis. Proc. Natl. Acad. Sci. USA 87: 1367-1371.
38. KLYCE, H. R., and C. S. MCLAUGHLIN, 1973 Characterization of temperature-sensitive mutants by photomicrographic procedure. Exp. Cell Res. 82: 47-56.
39. KRAINER, A. R., G. C. CONWAY and D. KOZAK, 1990 The essential pre-mRNA splicing factor SF2 influences 5′ splice site selection by activating proximal sites. Cell 62: 35-42.
40. KUO, C.-L., and J. L. CAMPBELL, 1983 Cloning of the Saccharomyces cerevisiae DNA replication genes: isolation of the CDC8 gene and two genes that compensate for the cdc8-1 mutation. Mol. Cell. Biol. 3: 1730-1737.
41. LAEMMLI, U. K., 1970 Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
42. LANGFORD, C. J., F. J. KLINZ, C. DONATH and D. GALLWITZ, 1984 Point mutations identify the conserved, intron-contained TAC-TAAC box as an essential sequence in yeast. Cell 36: 645-653.
43. LAPEYRE, B., H. BOURBON and F. AMALRIC, 1987 Nucleolin, the major nucleolar protein of growing eukaryotic cells: an unusual protein structure revealed by the nucleotidc sequence. Proc. Natl. Acad. Sci. USA 84: 1472-1476.
44. MATUNIS, E. L., M. J. MATUNIS and G. DREYFUSS, 1992 Characterization of the major hnRNP proteins from Drosophilia melanogaster. J. Cell Biol. 116: 257-269.
45. MATUNIS, E. L., M. J. MATUNIS and G. DREYFUSS, 1993 Association of individual hnRNP proteins and snRNPs with nascent transcripts. J. Cell Biol. 121: 219-228.
46. MAYEDA, A., and A. R. KRAINER, 1992 Regulation of alternate pre-mRNA splicing by hnRNP A1 and splicing factor SF2. Cell 68: 365-375.
47. MINVIELLE-SEBASTIA, L., P. J. PREKER and W. KELLER, 1994 RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3′-end processing factor. Science 266: 1702-1705.
48. MINVIELLE-SEBASTIA, L., B. WINSOR, N. BONNEAUD and F. LACROUTE, 1991 Mutations in the yeast RNA14 and RNA15 genes result in a abnormal mRNA decay rate: sequence analysis reveals an RNA-binding domain in the RNA15 protein. Mol. Cell. Biol. 11: 3075-3087.
49. OLSON, M. V., J. E. DUTCHIK, M. Y. GRAHAM, G. M. BRODEUR, C. HELMS et al., 1986 Random-clone strategy for genomic restriction mapping in yeast. Proc. Natl. Acad. Sci. USA 83: 7826-7830.
50. ORR-WEAVER, T. L., and J. W. SZOSTAK, 1983 Yeast recombination: the association between double-stranded gap repair and crossing-over. Proc. Natl. Acad. Sci. USA 80: 4417-4421.
51. PIÑOL-ROMA, S., and G. DREYFUSS, 1992 Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm. Nature 355: 730-732.
52. PIÑOL-ROMA, S., M. S. SWANSON, J. G. GALL and G. DREYFUSS, 1989 A novel heterogeneous nuclear RNP protein with a unique distribution on nascent transcripts. J. Cell Biol. 109: 2575-2587.
53. ROSE, M. D., P. NOVICK, J. H. THOMAS, D BOTSTEIN and G. R. FINK, 1987 A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector. Gene 60: 237-247.
54. ROSE, M. D., F. WINSTON and P. HIETER, 1990 Methods in Yeast Genetics: A Laboratory Course Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
55. ROTH, M. B., A. M. ZAHLER and J. A. STOLK, 1991 A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription. J. Cell Biol. 115: 587-596.
56. RUBY, S. W., and J. ABELSON, 1991 Pre-mRNA splicing in yeast. Trends Genet 7: 79-85.
57. RUSSEL, I., and D. TOLLERVY, 1995 Yeast Nop3p has structural and functional similarities to mammalian pre-mRNA binding proteins. Eur. J. Cell Biol. 66: 293-301.
58. RUSSEL, I. D., and D. TOLLERVEY, 1992 NOP3 is an essential yeast protein which is required for pre-rRNA processing. J. Cell Biol. 119: 737-747.
59. SACHS, A. B., M. W. BOND and R. D. KORNBERG, 1986 A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: domain structure and expression. Cell 45: 827-835.
60. SADLER, I., A. CHIANG, T. KURIHARA, J. ROTHBLATT, J. WAY et al., 1989 A yeast gene important for assembly into the endoplasmic reticulum and the nucleus has homology to DnaJ, an E. coli heat shock protein. J. Cell Biol. 109: 2665-2675.
61. SAMBROOK, J., E. F. FRITSCH and T. MANIATIS, 1989 Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
62. SANGER, F., S. NICKLEN and A. R. COULSON, 1977 DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
63. SIKORSKI, R. S., and P. HIETER, 1989 A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
64. SINGLETON, D. R., S. CHEN, M. HITOMI, C. KUMAGAI and A. M. TARTAKOFF, 1995 A yeast protein that bidirectionally affects nucleocytoplasmic transport. J. Cell Sci. 108: 265-272.
65. SPANN, P., M. FEINERMAN, J. SPERLING and R. SPERLING, 1989 Isolation and visualization of large compact ribonucleoprotein particles of specific nuclear RNAs. Proc. Natl. Acad. Sci. USA 86: 466-470
66. SPERLING, R., J. SPERLING, A. D. LEVINE, P. SPANN, G. R. STARK et al., 1985 Abundant nuclear ribonucleoprotein form of CAD RNA. Mol. Cell. Biol. 5: 569-575.
67. STRUHL, K., D. T. STINCHCOMB, S. SCHERER and R. W. DAVIS, 1979 High frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc. Natl Acad. Sci. USA 76: 1035-1039.
68. SWANSON, M. S., 1994 Functions of nuclear pre-mRNA binding proteins, pp. 17-33 in Pre-mRNA Processing, edited by A. I. LAMOND. Springer-Verlag, NY.
69. WILSON, S. M., K. V. DATAR, M. R. PADDY, J. R. SWEDLOW and M. S. SWANSON, 1994 Characterization of nuclear polyadenylated RNA-binding proteins in Saccharomyces cerevisiae. J. Cell Biol. 127: 1173-84.
70. YOUNG, R. A., 1991 RNA polymerase II. Annu. Rev. Biochem. 60: 689-715.