A 5′-proximal RNA sequence of murine coronavirus as a potential initiation site for genomic-length mRNA transcription

Journal of Virology

Volumn 70, Issue 2, 1996, Pages 705-711

  Zhang, Xuming ^a   Lai, Michael M C ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CORONAVIRUS; GENOME; MURINE HEPATITIS CORONAVIRUS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA REPLICATION; RNA SEQUENCE; RNA TRANSCRIPTION; SEQUENCE ANALYSIS; TRANSCRIPTION INITIATION;

ANIMALS; BASE SEQUENCE; BINDING SITES; CELL LINE; GENE EXPRESSION REGULATION, VIRAL; GENOME, VIRAL; MICE; MOLECULAR SEQUENCE DATA; MURINE HEPATITIS VIRUS; RNA, MESSENGER; RNA, VIRAL; SEQUENCE DELETION; TRANS-ACTIVATION (GENETICS);

EID: 0030028804     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.2.705-711.1996     Document Type: Article

References (36)

1. Baker, S. C., and M. M. C. Lai. 1990. An in vitro system for the leader-primed transcription of coronavirus mRNAs EMBO J. 9:4173-4179.
2. Budzilowicz, C. J., S. P. Wilczynski, and S. R. Weiss. 1985. Three intergenic regions of coronavirus mouse hepatitis virus strain A59 genome RNA contain a common nucleotide sequence that is homologous to the 3′ end of the viral mRNA leader sequence. J. Virol. 53:834-840
3. Chang, R.-Y., M. A. Hofmann, P. B. Sethna, and D. A. Brian. 1994. A cis-acting function for the coronavirus leader in defective interfering RNA replication. J. Virol. 68:8223-8231
4. Chang, R.-Y., R. Krishnan, and D. A. Brian. 1995. The leader UCUAAAC sequence element on the bovine coronavirus defective-interfering RNA replicon is not required for rapid reversion of a mutated leader, abstr W32-7, p. 181. In Abstracts of the 14th Scientific Meeting of the American Society for Virology 1995. American Society for Virology. Austin, Tex.
5. Fosmire, J. A., K. Hwang, and S. Makino. 1992. Identification and characterization of a coronavirus packaging signal. J Virol. 66:3522-3530
6. Hirano, N., K. Fujiwara, S. Hino, and M. Matsumoto. 1974 Replication and plaque formation of mouse hepatitis virus (MHV-2) in mouse cell line DBT culture. Arch. Gesamte Virusforsch. 44:298-302.
7. Jeong, Y. S., and S. Makino. 1994. Evidence for coronavirus discontinuous transcription J. Virol. 68:2615-2623.
8. Joo, M., and S. Makino. 1992 Mutagenic analysis of the coronavirus intergenic consensus sequence. J. Virol. 66:6330-6337.
9. Joo, M., and S. Makino. 1995. The effect of two closely inserted transcription consensus sequences on coronavirus transcription. J. Virol 69:272-280.
10. Keck, J. G., S. A. Stohlman, L. H. Soe, S. Makino, and M. M. C. Lai. 1987. Multiple recombination sites at the 5′-end of murine coronavirus RNA. Virology 156:331-341
11. Lai, M. M. C. 1990. Coronavirus: organization, replication and expression of genome Annu. Rev. Microbiol. 44:303-333
12. Lai, M. M. C., R. S. Baric, P. R. Brayton, and S. A. Stohlman. 1984. Charaterization of leader RNA on the virion and mRNAs of mouse hepatitis virus, a cytoplasmic RNA virus. Proc. Natl. Acad. Sci. USA 81:3026-3630
13. Lai, M. M. C., P. R. Brayton, R. C. Armen, C. D. Patton, C. Pugh, and S. A. Stohlman. 1981. Mouse hepatitis virus A59: messenger RNA structure and genetic localization of the sequence divergence from the hepatotropic strain MHV3. J. Virol. 39:823-834
14. Lai, M. M. C., S. Makino, L. H. Soe, C.-K. Shieh, J. G. Keck, and J. O. Fleming. 1987 Coronavirus: a jumping RNA transcription. Cold Spring Harbor Symp. Quant. Biol. 52:359-365.
15. Lai, M. M. C. C. D. Patton, R. S. Baric, and S. A. Stohlman. 1983. Presence of leader sequences in the mRNA of mouse hepatitis virus. J Virol. 46:1027-1033
16. Lee, H. J., C. K. Shieh, A. E. Gorbalenya, E. V. Koonin, N. La Monica, J. Tuler, A. Bagdzhadzhyan, and M. M. C. Lai. 1991. The complete sequence (22 kilobases) of murine coronavirus gene 1 encoding the putative proteases and RNA polymerase. Virology 180:567-582.
17. Leibowitz, J. L., K. C. Wilhemsen, and C. W. Bond. 1981. The virus-specific intracellular RNA species of two murine coronaviruses: MHV-A59 and MHV-JHM. Virology 114:39-51.
18. Liao, C.-L., and M. M. C. Lai. 1994. Requirement of the 5′-end genomic sequence as an upstream cis-acting element for coronavirus subgenomic mRNA transcription. J Virol. 68:4727-4737.
19. Makino, S., N. Fujioka, and K. Fujiwara. 1985. Structure of the intracellular defective viral RNAs of defective interfering particles of mouse hepatitis virus. J Virol 54:329-336.
20. Makino, S., J. G. Keck, S. A. Stohlman, and M. M. C. Lai. 1986. High-frequency RNA recombination of murine coronaviruses. J. Virol. 57:729-737
21. Makino, S., and M. Joo. 1993. Effect of intergenic consensus sequence flanking sequences on coronavirus transcription. J. Virol. 67:3304-3311.
22. Makino, S., and M. M. C. Lai. 1989. Evolution of the 5′-end of genomic RNA of murine coronaviruses during passages in vitro. Virology 169:227-232.
23. Makino, S., and M. M. C. Lai. 1989. High-frequency leader sequence switching during coronavirus defective interfering RNA replication. J. Virol. 63:5285-5292.
24. Makino, S., L. H. Soe, C. K. Shieh, and M. M. C. Lai. 1988. Discontinuous transcription generates heterogeneity at the leader fusion sites of coronavirus mRNAs. J. Virol. 62:3570-3873
25. Makino, S., S. A. Stohlman, and M. M. C. Lai. 1986. Leader sequences of murine coronavirus mRNAs can be freely reasserted: evidence for the role of free leader RNA in transcription. Proc Natl. Acad. Sci. USA 83:4204-4208
26. Makino, S., F. Taguchi, N. Hirano, and K. Fujiwara. 1984 Analysis of genomic and intercellular viral RNAs of small plaque mutants of mouse hepatitis virus, JHM strain. Virology 39:138-151.
27. Manaker, R. A., C. V. Piczak, A. A. Miller, and M. F. Stanton. 1961. A hepatitis virus complicating studies with mouse leukemia. J. Natl. Cancer Inst. 27:29-51.
28. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:463-5467.
29. Shieh, C. K., H. J. Lee, K. Yokomori, N. La Monica, S. Makino, and M. M. C. Lai. 1989. Identification of a new transcriptional initiation site and the corresponding functional gene 2b in the murine coronavirus RNA genome. J Virol. 63:3729-3736.
30. Shieh, C. K., L. H. Soe, S. Makino, M. F. Chang, S. A. Stohlman, and M. M. C. Lai. 1987. The 5′-end sequence of the murine coronavirus genomeimplications for multiple fusion sites in leader-primed transcription. Virology 156:321-330.
31. Spaan, W., H. Delius, M. Skinner, J. Armstrong, P. Rottier, S. Smeekens, B. A. M. van der Zeijst, and S. G. Siddell. 1983. Coronavirus mRNA synthesis involves fusion of non-contiguous sequences. EMBO J. 2:1839-1844.
32. Van der Most, R. G., R. J. de Groot, and W. J. M. Spaan. 1994. Subgenomic RNA synthesis directed by a synthetic defective interfering RNA of mouse hepatitis virus: a study of coronavirus transcription initiation J Virol. 68:3656-3666.
33. Zhang, X. M., and M. M. C. Lai. 1994. Unusual heterogeneity of leader-mRNA fusion in a murine coronavirus: implications for the mechanism of RNA transcription and recombination J Virol. 68:6626-6633.
34. Zhang, X. M., and M. M. C. Lai. 1995. Interactions between the cytoplasmic proteins and the intergenic (promoter) sequence of mouse hepatitis virus RNA: correlation with the amounts of subgenomic mRNA transcribed. J. Virol. 69:1637-1644.
35. Zhang, X. M., and M. M. C. Lai. 1995. Regulation of coronavirus RNA transcription is likely mediated by protein-RNA interactions, p. 515-521. In P. J. Talbot and G. A. Levy (ed.), Corona and related viruses. Plenum Press, New York.
36. Zhang, X. M., C.-L. Liao, and M. M. C. Lai. 1994. Coronavirus leader RNA regulates and initiates subgenomic mRNA transcription both in trans and in cis. J Virol. 68:4738-4746.