Genetic variation inferred from RAPD fingerprinting in three species of tilapia

Aquaculture International

Volumn 4, Issue 1, 1996, Pages 19-30

  Dinesh, K R ^a   Lim, T M ^a   Chan, W K ^a   Phang, V P E ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Genetic variation; RAPD fingerprinting; Species differentiation; Tilapia (Oreochromis aureus, O. mossambicus, O. niloticus)

Indexed keywords

OREOCHROMIS SPP.;

EID: 0030026421     PISSN: 09676120     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00175218     Document Type: Article

References (33)

1. Bardakci, F. and Skibinski, D.O.F. (1994) Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity 73, 117-123.
2. Baruffi, L., Damiani, G., Guglielmino, C.R., Bandi, C., Malacrida, A.R. and Gasperi, G. (1995) Polymorphism within and between populations of Ceratitis capitata: comparisons between RAPD and multilocus enzyme electrophoresis data. Heredity 74, 425-437.
3. Bidochka, M.J., McDonald, M.A., St Leger, R.J. and Roberts, D.W. (1994) Differentiation of species and strains of entomopathogenic fungi by random amplification of polymorphic DNA (RAPD). Current Genetics 25, 107-113.
4. Bielawski, J.P., Noack, K. and Pumo, D.E. (1995) Reproducible amplification of RAPD markers from vertebrate DNA. BioTechniques 18, 856-860.
5. Caetano-Anollés, G., Bassam, B.J. and Gresshoff, P.M. (1991) DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Bio/Technology 9, 553-557.
6. Carvalho, G.R. (1993) Evolutionary aspects of fish distribution: genetic variability and adaptation. Journal of Fish Biology 43 (Supplement A), 53-73.
7. Clark, A.G. and Lanigan, C.M.S. (1993) Prospects for estimating nucleotide divergence with RAPDs. Molecular Biology and Evolution 10, 1096-1111.
8. Dawson, I.K., Simons, A.J., Waugh, R. and Powell, W. (1995) Diversity and genetic differentiation among subpopulations of Gliricidia sepium revealed by PCR-based assays. Heredity 74, 10-18.
9. Dinesh, K.R., Chua, K.L., Phang, V.P.E., Lim, T.M. and Tan, T.W. (1993a) DNA polymorphisms in colour mutants of tiger barb, Barbus tetrazona, by arbitrarily primed polymerase chain reaction. In: Proceedings of the International Workshop on Genetics in Aquaculture and Fishery Management (eds D. Penman, N. Roongratri and B. McAndrew) Stirling, UK, pp. 125-127.
10. Dinesh, K.R., Lim, T.M., Chua, K.L., Chan, W.K. and Phang, V.P.E. (1993b) RAPD analysis: an efficient method of DNA fingerprinting in fishes. Zoological Science 10, 849-854.
11. Dinesh, K.R., Chan, W.K., Lin, T.M. and Phang, V.P.E. (1995) RAPD markers in fishes: an evaluation of resolution and reproducibility. Asia-Pacific Journal of Molecular Biology and Biotechnology 3, 112-118.
12. Foo, C.L., Dinesh, K.R., Lim, T.M., Chan, W.K. and Phang, V.P.E. (1995) Inheritance of RAPD markers in the guppy fish, Poecilia reticulata. Zoological Science 12, 535-541.
13. Franck, J.P.C., Kornfield, I. and Wright, J.M. (1994) The utility of SATA satellite DNA sequences for inferring phylogenetic relationships among the three major genera of tilapine cichlid fishes. Molecular Phylogenetics and Evolution 3, 10-16.
14. Hallerman, E.M. and Beckmann, J.S. (1988) DNA-level polymorphism as a tool in fisheries science. Canadian Journal of Fisheries and Aquatic Sciences 45, 1075-1087.
15. Heun, M., Murphy, J.P. and Phillips, T.D. (1994) A comparison of RAPD and isozyme analysis for determination of genetic relationships among Avena sterilis L. accessions. Theoretical and Applied Genetics 87, 689-696.
16. Johnson, S.L., Africa, D., Horne, S. and Postlethwait, J.H. (1995) Half-tetrad analysis in zebrafish: mapping the ros mutations and the centromere on linkage group I. Genetics 139, 1727-1735.
17. Kappe, A.L., Van De Zande, L., Vedder, E.L., Bijlsma, R. and Van Delden, W. (1995) Genetic variation in Phoca vitulina (the harbour seal) revealed by DNA fingerprinting and RAPDs. Heredity 74, 647-653.
18. Link, W., Dixkens, C., Singh, M., Schwall, M. and Melchinger, A.E. (1995) Genetic diversity in European and Mediterranean faba bean germ plasm revealed by RAPD markers. Theoretical and Applied Genetics 90, 27-32.
19. McAndrew, B.J. and Majumdar, K.C. (1983) Tilapia stock indentification using electrophoretic markers. Aquaculture 30, 249-261.
20. Mailer, R.J., Scarth, R. and Fristensky, B. (1994) Discrimination among cultivars of rapeseed (Brassica napus L.) using DNA polymorphisms amplified from arbitrary primers. Theoretical and Applied Genetics 87, 697-704.
21. Meunier, J.-R. and Grimont, P.A.D. (1993) Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Research in Microbiology 144, 373-379.
22. Micheli, M.R., Bova, R., Pascale, E. and D'Ambrosio, E. (1994) Reproducible DNA fingerprinting with the random amplified polymorphic DNA (RAPD) method. Nucleic Acids Research 22, 1921-1922.
23. Nei, M. and Li, W.H. (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, U.S.A. 76, 5269-5273.
24. Penner, G.A., Bush, A., Wise, R., Kim, W., Domier, L., Kasha, K., Laroche, A., Scoles, G., Molnar, S.J. and Fedak, G. (1993) Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods and Applications 2, 341-345.
25. Postlethwait, J.H., Johnson, S.L., Midson, C.N., Talbot, W.S., Gates, M., Ballinger, E.W., Africa, D., Andrews, R., Carl, T., Eisen, J.S., Horne, S., Kimmel, C.B., Hutchinson, M., Johnson, M. and Rodriguez, A. (1994) A genetic linkage map for the zebrafish. Science 264, 699-703.
26. Sodsuk, P. and McAndrew, B.J. (1991) Molecular systematics of three tilapine genera Tilapia, Sarotherodon and Oreochromis using allozyme data. Journal of Fish Biology 39, 301-308.
27. Thorgaard, G.H. (1992) Applications of genetic technologies to rainbow trout. Aquaculture 100, 85-97.
28. Turner, G.F., Pitcher, T.J. and Grimm, A.S. (1989) Identification of Lake Malawi Oreochromis (Nyasalapia) spp. using multivariate morphometric technique. Journal of Fish Biology 35, 799-812.
29. Wada, H., Naruse, K., Shimada, A. and Shima, A. (1995) Genetic linkage map of a fish, the Japanese medaka Oryzias latipes. Molecular Marine Biology and Biotechnology 269-275.
30. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18, 6531-6535.
31. Wright, J.M. (1993) DNA fingerprinting of fishes. In: Biochemistry and Molecular Biology of Fishes, Vol. 2 (eds P.W. Hochachka and T.P. Mommsen) Elsevier Science Publishers B.V.: Amsterdam, pp. 57-91.
32. Yu, Y. and Pauls, K.P. (1992) Optimization of the PCR program for RAPD analysis. Nucleic Acids Research 20, 2606.
33. Yu, L.-X. and Nuygen, H.T. (1994) Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.). Theoretical and Applied Genetics 85, 668-672.