Arginine-binding RNAs resembling TAR identified by in vitro selection

Biochemistry

Volumn 35, Issue 7, 1996, Pages 2229-2238

  Tao, Jianshi ^a   Frankel, Alan D ^a,b  

^a GLADSTONE INSTITUTE OF VIROLOGY AND IMMUNOLOGY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; MESSENGER RNA; NUCLEOTIDE; TRANSACTIVATOR PROTEIN; TRANSFER RNA; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; BINDING AFFINITY; BINDING SITE; DISSOCIATION CONSTANT; HUMAN IMMUNODEFICIENCY VIRUS; MOLECULAR MODEL; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; RNA STRUCTURE;

ARGININE; BASE SEQUENCE; BINDING SITES; HIV LONG TERMINAL REPEAT; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RIBONUCLEASES; RNA;

EID: 0030025648     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi951844b     Document Type: Article

References (55)

1. Battiste, J. L., Tan, R., Frankel, A. D., & Williamson, J. R. (1994) Biochemistry 33, 2741-2747.
2. Biou, V., Yaremchuk, A., Tukalo, M., & Cusack, S. (1994) Science 263, 1404-1410.
3. Burd, C. G., & Dreyfuss, G. (1994) Science 265, 615-621.
4. Calnan, B. J., Biancalana, S., Hudson, D., & Frankel, A. D. (1991a) Genes Dev. 5, 201-210.
5. Calnan, B. J., Tidor, B., Biancalana, S , Hudson, D., & Frankel, A. D. (1991b) Science 252, 1167-1171.
6. Chen, L., & Frankel, A. D. (1994) Biochemistry 33, 2708-2715.
7. Cheong, C., Varani, G., & Tinoco, I., Jr. (1990) Nature 346, 680-682.
8. Churcher, M. J., Lamont, C., Hamy, F., Dingwall, C., Green, S. M., Lowe, A. D., Butler, J. G., Gait, M. J., & Karn, J. (1993) J. Mol. Biol. 230, 90-110.
9. Colvin, R. A., & Garcia-Blanco, M. A. (1992) J. Virol. 66, 930-935.
10. Connell, G. J., Illangesekare, M., & Yarus, M. (1993) Biochemistry 32, 5497-5502.
11. Connell, G. J., & Yarus, M. (1994) Science 264, 1137-1141.
12. Cruse, W. B., Saludjian, P., Biala, E., Strazewski, P., Prange, T., & Kennard, O. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 4160-4164.
13. Dieckmann, T., & Feigon, J. (1994) Curr. Opin. Struct. Biol. 4, 745-749.
14. Doudna, J. A., Grosshans, C., Gooding, A., & Kundrot, C. E. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 7829-7833.
15. Ellington, A. D., & Szostak, J. W. (1990) Nature 346, 818-822.
16. Famulok, M. (1994) J. Am. Chem. Soc. 116, 1698-1706.
17. Hamy, F., Asseline, U., Grasby, J., Iwai, S., Pritchard, C., Slim, G., Butler, P. J., Karn, J., & Gait, M. J. (1993) J. Mol. Biol. 230, 111-123.
18. Harada, K., & Frankel, A. D. (1995) EMBO J. 14, 5798-5811
19. Heus, H. A., & Pardi, A. (1991) Science 253, 191-194.
20. Holbrook, S R., Cheong, C., Tinoco, I., Jr., & Kim, S. H. (1991) Nature 353, 579-581.
21. Kim, S. H., Suddath, F. L., Quigley, G. J., McPherson, A., Sussman, J. L., Wang, A. H., Seeman, N. C., & Rich, A. (1974) Science 185, 435-440.
22. Lohman, T. M., & Mascotti, D. P. (1992) Methods Enzymol. 212, 400-424.
23. Mattaj, I. W. (1993) Cell 73, 837-840.
24. Milligan, J. F., & Uhlenbeck, O. C. (1989) Methods Enzymol. 180, 51-62.
25. Oubridge, C., Ito, N., Evans, P. R., Teo, C. H., & Nasai, K. (1994) Nature 372, 432-438.
26. Peterson, R. D., Bartel, D. P., Szostak, J. W., Horvath, S. J., & Feigon, J. (1994) Biochemistry 33, 5357-5366.
27. Pley, H. W., Flaherty, K. M., & McKay, D. B. (1994a) Nature 372, 111-113.
28. Pley, H. W., Flaherty, K. M., & McKay, D. B. (1994b) Nature 372, 68-74.
29. Puglisi, J. D., Wyatt, J. R., & Tinoco, I., Jr. (1990a) J. Mol. Biol. 214, 437-453.
30. Puglisi, J. D., Wyatt, J. R., & Tinoco, I., Jr. (1990b) Biochemistry 29, 4215-4226.
31. Puglisi, J. D., Tan, R., Calnan, B. J., Frankel, A. D., & Williamson, J. R. (1992) Science 257, 76-80.
32. Puglisi, J. D., Chen, L., Frankel, A D., & Williamson, J. R. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 3680-3684.
33. Purohit, P., & Stern, S. (1994) Nature 370, 659-662.
34. Quigley, G. J., & Rich, A. (1976) Science 194, 796-806.
35. Robertus, J. D., Ladner, J. E., Finch, J. T., Rhodes, D., Brown, R. S., Clark, B. F., & Klug, A. (1974) Nature 250, 546-551.
36. Rould, M. A., Perona, J. J., Söll, D., & Steitz, T. A. (1989) Science 246, 1135-1142.
37. Ruff, M., Krishnaswamy, S., Boeglin, M., Poterszman, A., Mitschler, A., Podjarny, A., Rees, B., Thierry, J. C., & Moras, D. (1991) Science 252, 1682-1689.
38. SantaLucia, J., Jr., & Turner, D H. (1993) Biochemistry 32, 12612-12623.
39. Scott, W. G., Finch, J. T., & Klug, A. (1995) Cell 81, 991-1002.
40. Sumner-Smith, M., Roy, S., Barnett, R., Reid, L. S., Kuperman, R., Delling, U , & Sonenberg, N. (1991) J. Virol. 65, 5196-5202.
41. Szewczak, A. A., Moore, P. B., Chang, Y. L., & Wool, I. G. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 9581-9585.
42. Tan, R., & Frankel, A. D. (1992) Biochemistry 31, 10288-10294.
43. Tan, R., Chen, L., Buettner, J. A., Hudson, D., & Frankel, A. D. (1993) Cell 73, 1031-1040.
44. Tao, J., & Frankel, A. D. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 2723-2726.
45. Tao, J., & Frankel, A. D. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 1571-1575.
46. Tuerk, C., & Gold, L. (1990) Science 249, 505-510.
47. Valegard, K., Murray, J. B., Stockley, P. G., Stonehouse, N. J., & Liljas, L. (1994) Nature 371, 623-626.
48. Varani, G., Cheong, C., & Tinoco, I., Jr. (1991) Biochemistry 30, 3280-3289
49. Weeks, K. M., & Crothers, D. M. (1991) Cell 66, 577-588.
50. Weeks, K. M., & Crothers, D. M. (1992) Biochemistry 31, 10281-10287.
51. Weeks, K. M., Ampe, C., Schultz, S. C., Steitz, T. A., & Crothers, D. M. (1990) Science 249, 1281-1285.
52. Wimberly, B., Varani, G., & Tinoco, I., Jr. (1993) Biochemistry 32, 1078-1087.
53. Yarus, M. (1988) Science 240, 1751-1758.
54. Yarus, M. (1989) Biochemistry 28, 980-988.
55. Yarus, M., Illangesekare, M., & Christian, E. (1991) J. Mol. Biol. 222, 995-1012.