Hepatitis C virus variants from Jakarta, Indonesia classifiable into novel genotypes in the second (2e and 2f), tenth (10a) and eleventh (11a) genetic groups

Journal of General Virology

Volumn 77, Issue 2, 1996, Pages 293-301

  Tokita, Hajime ^a   Okamoto, Hiroaki ^a   Lizuka, Hisao ^b   Kishimoto, Junichi ^c   Tsuda, Fumio ^d   Lesmana, Laurentius A ^e   Miyakawa, Yuzo ^f   Mayumi, Makoto ^a  

^a JICHI MEDICAL UNIVERSITY   (Japan)

^b JAPANESE RED CROSS SOCIETY   (Japan)

^c Institute of Immunology Co Ltd   (Japan)

^d Shinagawa ku   (Japan)

^e UNIVERSITY OF INDONESIA   (Indonesia)

^f Mita Institute   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPARATIVE STUDY; GENOTYPE; HEPATITIS C VIRUS; HUMAN; INDONESIA; MAJOR CLINICAL STUDY; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

HEPATITIS C VIRUS;

EID: 0030024940     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-77-2-293     Document Type: Article

References (28)

1. BUKH, J., PURCELL, R. H. & MILLER, R. H (1993). At least 12 genotypes of hepatitis C virus predicted by sequence analysis of the putative E1 gene of isolates collected worldwide Proceedings of the National Academy of Sciences, USA 90, 8234-8238.
2. BUKH, J , PURCELL, R. H. & MILLER, R H. (1994) Sequence analysis of the core gene of 14 hepatitis C virus genotypes. Proceedings of the National Academy of Sciences. USA 91, 8239-8243.
3. BUKH, J., MILLER, R. H & PURCELL, R. H. (1995). Genetic heterogeneity of hepatitis C virus: quasispecies and genotypes. Seminars in Livet Disease 15, 41-63
4. CHA, T A , BEALL, E , IRVINE, B., KOLBERG, J., CHIEN, D., KUO, G. & URDEA, M. S. (1992). At least five related, but distinct, hepatitis C viral genotypes exist. Proceedings of the National Academy of Sciences, USA 89, 7144-7148.
5. ENOMOTO, N., TAKADA, A., NAKAO, T. & DATE, T (1990). There are two major types of hepatitis C virus in Japan, Biochemical and Biophysical Research Communications 170, 1021-1025.
6. GRAKOUI, A., MCCOURT, D. W., WYCHOWSKI, C., FEINSTONE, S. M. & RICE, C. M. (1993). Characterization of the hepatitis C virus-encoded serine proteinase: determination of proteinase-dependent polyprotein cleavage sites. Journal of Virology 67, 2832-2843.
7. HIJIKATA, M., KATO, N., OOTSUYAMA, Y., NAKAGAWA, M., OHKOSHI, S. & SHIMOTOHNO, K. (1991). Hypervariable regions in the putative glycoprotein of hepatitis C virus. Biochemical and Biophysical Research Communications 175, 220-228.
8. HINO, K., SAINOKAMI, S., SHIMODA, K., IINO, S., WANG, Y , OKAMOTO, H., MIYAKAWA, Y. & MAYUMI, M (1994). Genotypes and titers of hepatitis C virus for predicting response to interferon in patients with chronic hepatitis C. Journal of Medical Virology 42, 299-305.
9. HOUGHTON, M , WEINER, A., HAN, J., KUO, G. & CHOO, Q.-L. (1991). Molecular biology of the hepatitis C viruses: implications for diagnosis, development and control of viral disease. Hepatology 14, 381-388.
10. MAHANEY, K., TEDESCHI, V., MAERTENS, G., DI BISCEGLIE, A. M., VERGALLA, J., HOOFNAGLE, J. H. & SALLIE, R. (1994). Genotypic analysis of hepatitis C virus in American patients. Hepatology 20, 1405-1411.
11. MIYAKAWA, Y., OKAMOTO, H. & MAYUMI, M. (1995). Classifying hepatitis C virus genotypes. Molecular Medicine Today 1, 20-25.
12. MORI, S., KATO, N., YAGYU, A., TANAKA, T., IKEDA, Y., PETCHCLAI, B., CHIEWSILP, P., KURIMURA, T. & SHIMOTOHNO, K (1992). A new type of hepatitis C virus in patients in Thailand. Biochemical and Biophysical Research Communications 183, 334-342.
13. NEI, M. (1987). Phylogenetic trees. In Molecular Evolutionary Genetics, pp. 287-326. Edited by M. Nei. New York: Columbia University Press.
14. NOUSBAUM, J B., POL, S., NALPAS, B., LANDAIS, P., BERTHELOT, P , BRECHOT, C. & THE COLLABORATIVE STUDY GROUP (1995). Hepatitis C virus type 1b (II) infection in France and Italy. Annals of Internal Medicine 122, 161-168.
15. OKAMOTO, H., KOJIMA, M., OKADA, S , YOSHIZAWA, H., IIZUKA, H., TANAKA, T., MUCHMORE, E. E., PETERSON. D. A., ITO, Y. & MISHIRO, S. (1992a) Genetic drift of hepatitis C virus during an 8-2-year infection in a chimpanzee: variability and stability Virology 190, 894-899
16. OKAMOTO, H., SUGIYAMA, Y., OKADA, S., KURAI, K., AKAHANE, Y., SUGAI, Y., TANAKA, T , SATO, K , TSUDA, F., MIYAKAWA, Y. & MAYUMI, M (1992b). Typing hepatitis C virus by polymerase chain reaction with type-specific primers, application to clinical surveys and tracing infectious sources. Journal of General Virology 73, 673-679.
17. OKAMOTO, H., TOKITA, H., SAKAMOTO, M., HORIKITA, M , KOJIMA, M., IIZUKA, H. & MISHIRO, S (1993). Characterization of the genomic sequence of type V (or 3a) hepatitis C virus isolates and PCR primers for specific detection. Journal of General Virology 74, 2385-2390.
18. OKAMOTO, H , KOJIMA, M., SAKAMOTO, M., IIZUKA, H., HADIWANDOWO, S., SUWIGNYO, S , MIYAKAWA, Y. & MAYUMI, M. (1994). The entire nucleotide sequence and classification of a hepatitis C virus isolate of a novel genotype from an Indonesian patient with chronic liver disease. Journal of General Virology 75, 629-635.
19. Qu, D., Li, J. S., VITVITSKI, L., MECHAI, S., BERBY, F., TONG, S. P., BAILLY, F , WANG, Q. S., MARTIN, J. L. & TREPO, C. (1994). Hepatitis C virus genotypes in France: comparison of clinical features of patients with HCV type I and type II. Journal of Hepatology 21, 70-75.
20. SAKAMOTO, M., AKAHANE, Y., TSUDA, F., TANAKA, T , WOODFIELD, D. G. & OKAMOTO, H. (1994). Entire nucleotide sequence and characterization of a hepatitis C virus of genotype V/3a. Journal of General Virology 75, 1761-1768.
21. SIMMONDS, P., HOLMES, E. C., CHA, T. A., CHAN, S. W., MCOMISH, F., IRVINE, B., BEALL, E , YAP, P L., KOLBERG, J & URDEA, M. S. (1993). Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. Journal of General Virology 74, 2391-2399.
22. SIMMONDS, P. (1995). Variability of hepatitis C virus. Hepatology 21, 570-583
23. STUYVER, L., ROSSAU, R., WYSEUR, A., DUHAMEL, M., VANDERBORGHT, B., VAN HEUVERSWYN, H. & MAERTENS, G. (1993). Typing of hepatitis C virus isolates and characterization of new subtypes using a line probe assay. Journal of General Virology 74, 1093-1102.
24. STUYVER, L., VAN ARNHEM, W., WYSEUR, A., HERNANDEZ, F., DELAPORTE, E. & MAERTENS, G. (1994). Classification of hepatitis C viruses based on phylogenetic analysis of the envelope 1 and nonstructural 5B regions and identification of five additional subtypes. Proceedings of the National Academy of Sciences, USA 91, 10134-10138.
25. TOKITA, H., SHRESTHA, S. M., OKAMOTO, H., SAKAMOTO, M., HORIKITA, M., IIZUKA, H., SHRESTHA, S., MIYAKAWA, Y. & MAYUMI, M. (1994a). Hepatitis C virus variants from Nepal with novel genotypes and their classification into the third major group. Journal of General Virology 75, 931-936.
26. TOKITA, H., OKAMOTO, H., TSUDA, F., SONG, P., NAKATA, S., CHOSA, T., IIZUKA, H., MISHIRO, S., MIYAKAWA, Y. & MAYUMI, M. (1994b). Hepatitis C virus variants from Vietnam are classifiable into the seventh, eighth, and ninth major genetic groups. Proceedings of the National Academy of Sciences, USA 91, 11022-11026.
27. TOKITA, H , OKAMOTO, H., LUENGROJANAKUL, P., VAREESAGNTHIP, K., CHAINUVATI, T., IIZUKA, H., TSUDA, F., OKAMOTO, H , MIYAKAWA, Y & MAYUMI, M. (1995). Hepatitis C virus variants from Thailand classifiable into five novel genotypes in the sixth (6b), seventh (7c, 7d) and ninth (9b, 9c) major genetic groups Journal of General Virology 76, 2329-2335.
28. YOSHIOKA, K., KAKUMU, S., WAKITA, T., ISHIKAWA, T., ITOH, Y., TAKAYANAGI, M., HIGASHI, Y., SHIBATA, M. & MORISHIMA, T. (1992). Detection of hepatitis C virus by polymerase chain reaction and response to interferon-alpha therapy: relationship to genotypes of hepatitis C virus. Hepatology 16, 293-299.