Regional assignment of EST sequences on human chromosome 13

Cytogenetics and Cell Genetics

Volumn 72, Issue 1, 1996, Pages 72-77

  Hawthorn, L A ^a   Cowell, J K ^b  

^a LERNER RESEARCH INSTITUTE   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 13; DNA SEQUENCE; GENE ASSIGNMENT; GENE LOCATION; HUMAN; HUMAN CELL; NORMAL HUMAN; PRIORITY JOURNAL;

CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, YEAST; CHROMOSOMES, HUMAN, PAIR 13; DNA, COMPLEMENTARY; GENETIC MARKERS; HUMANS; POLYMERASE CHAIN REACTION; SEQUENCE TAGGED SITES;

EID: 0030024640     PISSN: 03010171     EISSN: 1424859X     Source Type: Journal    
DOI: 10.1159/000134166     Document Type: Article

References (38)

1. Adams MD, Kelley JM, Gocayne J, Dubnick M, Poly-meropoulous MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, Kerlavage AR, McCombie WR, Venter JC, Merril CR: Complementary DNA sequencing: expressed sequence tags and the Human Genome Project, Genomics 12:492-496 (1992).
2. Barr FG, Galili N, Holick J, Biegel JA, Rovera G, Emanuel BS: Rearrangement of the PAX3 paired box gene in the patdiatric solid tumour alveolar rhabdomyosarcoma, Nature Genet 3:113-117 (1993).
3. Call KM, Glaser T, Ito CY, Buckler AJ, Pelletier J, Haber DA, Rose EA, Krai, A, Yeger H, Lewis WH, Jones C, Housman DE: Isolation and characterization of a zinc finger polypeptide gene at the human chromosome 11 Wilms' tumour locus, Cell 60: 509-520 (1990).
4. Collins A, Keats BJ, Dracopoli N, Shields DE, Morton NE: Integration of gene maps: chromosome I, Proc natl Acad Sci, USA 89:4598-4602 (1992).
5. Cowell JK, Mitchell CD: A somatic cell hybrid mapping panel for the regional assignment of human chromosome 13-specific DNA sequences, Cyto-genet Cell Genet 52:1-6 (1989).
6. Craig JM, Bickmore WA: The distribution of CpG islands in mammalian chromosomes, Nature Genet 7:376-381 (1994).
7. Durkin AS, Nierman WC, Zoghbi H, Jones C, Kozak CA, Maglott DR: Chromosome assignment of human brain expressed sequence tags (ESTs) by analysing fluorescentiy labeled PCR products from hybrid cell panels, Cytogenet Cell Genet 65:86-91 (1994).
8. Friend SH, Bernards R, Rogclj S, Weinberg RA, Rapa-port JM, Albert DM, Dryja TP: A human DNA segment with properties of the gene that predisposes to retinoblastoma and osteosarcoma, Nature 323:643-646 (1986).
9. Guilford P, Ben Arab S, Blanchard S, Levilliers J, Weissenbach J, Belkahia A, Petit C: A non-syndromic form of neurosensory, recessive deafness maps to the pericentromeric region of chromosome 13q, Nature Genet 6:24-28 (1994).
10. Gyapay G, Morisette J, Vignal A, Dib C, Fizames C, Millasscau P, Marc S, Bemardi G, Lathrop M, Weissenbach J: The 1993-94 Généthon human genetic linkage map, Nature Genet 7:246-307 (1994).
11. Hawthorn LA, Chapman R, Oscier D, Cowell JK: The consistent 13q 14 translocation breakpoint seen in chronic B-cell lcuka:mia (BCLL) involves the deletion of the DI3S25 locus which lies distal to the retinoblastoma predisposition gene, Oncogene 8: 1415-1419 (1993).
12. Hong H, Giorda R, Trucco M, Chakravarti A: Dinucleotide repeat polymorphism at the DXSI146 locus, Hum molec Genet 2:1078 (1993).
13. Houwen RHJ, Pautler SE, Barwell JA, Arden K, Buchanan JA, James CD, Cavenee WK, Buys CHCM, Cowell JK, Cox DW: Isolation and regional localization of 25 anonymous DNA probes on a chromosome 13 hvbrid panel, Cytogenet Cell Genet 57:87-90 (1991).
14. Kclscll DP, Rookc L, Warne D, West L, Povcy S, Spurr NK: Development of a panel of monochromal somatic cell hybrids for rapid gene mapping and the assignment of alpha-catenin (CTNNAI) and p21 (WAFl), Ann hum Genet 59:233-241 (1995).
15. Kempski H, McDonald D, Michalski AJ, Roberts T, Goldman JM, Cross NCP, Cowell JK: Localization of the 8;13 translocation breakpoint associated with myeloproliferative disease to a 1.5 Mbp region of chromosome 13, Genes Chrom Cancer 12: 283-287 (1994).
16. Kooy RF, Verlind E, Houwen RHJ, Shapiro DN, Hawthorn LA, Cowell JK, SchelTer H, Buys CHCM: A deletion hybrid breakpoint map of the chromosomal region 13q 14 -> q21 orders 19 genetic markers in 10 intervals, Eur J hum Genet 2:59-65 (1994).
17. Matise T, Perlin M, Chakravarti A: Automated construction of genetic linkage maps using an expert system (multiMap):application to 1,257 human microsatellite markers, Nature Genet 6:384-390 (1994).
18. Mazarella R, Srivastava AK: Physical linkage of expressed sequence lags (ESTs) to polymorphic markers on the X chromosome, Hum molec Genet 3:1095-1101 (1994).
19. Michalski A, Cowell JK: Molecular basis of ptcdiatric solid tumours, in Cooke T, Lemoinc N (eds): Genes, Cancer and the Surgeon, pp 276-288 (Blackwell Scientific, London 1994).
20. Michalski AJ, Cotter FE, Cowell JK: Isolation of chromosome-specific DNA from an Alii polymerase chain reaction library to define the breakpoint in a patient with a constitutional translocation, t (!;l3) (q22;q!2), and ganglioneuroblastoma, Oncogene 7:1595-1602 (1992).
21. Mitchell CD, Cowell JK: Predisposition to retinoblastoma due to a translocation within the 4.7R locus, Oncogene 4:25 3-257 (1989).
22. Mitchell CD, Ventris JA, Warr TJ, Cowell JK: Molecular definition in a somatic cell hybrid of a specific 2:13 translocation breakpoint in childhood rhabdomyosarcoma, Oncogene 6:89-92 (1991).
23. Mulligan LM, Kwok JBJ, Healey CS, Elsdon MJ, Eng C, Gardner E, Love DR, Mole SE, Moore JK, Papi L, Ponder MA, Telenius H, TunnaclifTe A, Ponder BAJ: Germ-line mutations of the RET proto-onco-gene in multiple endocrine neoplasia type 2A, Nature 363:458-460 (1993).
24. Othmanc KB, Hamida MG, Pericak-Vancc MA, Hami-da CB, Biel S, Carter SC, Bowcock AM, Pctruhkin K, Gilliam TC, Roses AD, Hentali F, Vance JM: Linkage of Tunisian autosomal recessive Du-chenne-like muscular dystrophy to the perieen-tromeric region of chromosome 13q, Nature Genet 2:315-317 (1992).
25. Parrish JE, Nelson DL: Regional assignment of 19 X-linked ESTs, Hum molec Genet 2:1901-1905 (1993).
26. Pinkel D, Landegenl J, Collins C, Fuscoe J, Segraves R, Lucas J, Gray J: Fluorescence in situ hybridization with human chromosome-specific libraries: detection of trisomy 21 and translocations of chromosome 4, Proc natl Acad Sci, USA 85:9138-9142 (1988).
27. Pinkel D, Straume T, Gray JW: Cytogenetic analysis using quantitative high-sensitivity fluorescence hybridization, Proc natl Acad Sci, USA 83:2934-2938 (1986).
28. Polvmeropoulos MH, Xiao H, Glodck A, Gorski M, Adams MD, Moreno RF, Fitzgerald MG, Venter JC, Merril CR: Chromosomal assignment of 46 brain cDNAs, Genomics 12:492-496 (1992).
29. Polymeropolos MH, Xiao H, Sikela JM, Adams M, Venter JC: Chromosomal distribution of 320 genes from a brain cDNA library, Nature Genet 4:381-386 (1993).
30. Saccone S, De Sario A, Valle GD, Bcrnardi G: The highest gene concentrations in the human genome arc in telomeric bands of metaphase chromosomes, Proc natl Acad Sci, USA 89:4913-4917 (1992).
31. Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N: Enzymatic amplification of α-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anaemia, Science 230:1350-1354 (1985).
32. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual, 2nd Ed, Vol 3 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor 1989).
33. Schurr E, Sakmene E, Morgan K, Chu ML, Gros P: Mapping of Collal and colaai to proximal murine chromosome I identifies conserved linkage of structural protein genes between murine chromosome I and human chromosome 2q, Genomics 8: 477-486 (1994).
34. Ture-Carel C, Lizard-Nacol S, Justrabo E, Favrot M, Philip T, Tabone E: Consistent chromosomal translocation in alveolar rhabdomyosarcoma, Ophthal paid Genet 19:361-362 (1986k
35. Warhurton D, Yu M-T, Tantravahi U, Lee C, Cayanis E, Russo J, Fischer SG: Regional localisation of 32 Not-Ilintlill fragments from a human chromosome 13 library by a somatic cell hybrid mapping panel and in situ hybridisation, Genomics 16:355-360 (1993).
36. Washington SS, Bowcock AM, Gerkcn S, Matsunami N, Lcsh D, Osboume-Lawrencc SL, Cowell JK, Ledbetter DH, White RL, Chakravati A: A somatic cell hybrid map of human chromosome 13, Genomics 18:486-495 (1994).
37. Wooster R, Cleton-Janscn EM, Collins N, Mangion RS, Corneüs RS, Cooper CS, Gusterson BA, Ponder BAJ, von Deimling A, Wiestier OD, Comelissc P, Devilee P, Stratton MR: Instability of short tandem repeats (microsatellites) in human cancers, Nature Genet 6:152-156 (1994).
38. Yoo GIL Xu H, Brennan JA, Waslra W, Hruban RH, Koch W, Benedict WF, Sidransky D: Infrequent inactivation of the retinoblastoma gene despite frequent loss of chromosome 13q in head and neck squamous cell carcinoma, Cancer Res 54:4603-4606 (1994).