Evaluation of different amplification protocols for use in primer-extension preamplification

BioTechniques

Volumn 20, Issue 2, 1996, Pages 219-225

  Casas, Eduardo ^a   Kirkpatrick, Brian W ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; DNA POLYMERASE; MICROSATELLITE DNA;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA TEMPLATE; GENE AMPLIFICATION; GENOTYPE; NONHUMAN; SKIN BIOPSY; SWINE;

ANIMALS; DNA PRIMERS; DNA, SATELLITE; DNA-DIRECTED DNA POLYMERASE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FIBROBLASTS; GENETIC MARKERS; GENOTYPE; POLYMERASE CHAIN REACTION; SWINE;

ANIMALIA; PYROCOCCUS; SUS SCROFA;

EID: 0030022320     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/96202st02     Document Type: Article

References (17)

1. Barnes, W.M. 1994. PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates. Proc. Natl. Acad. Sci. USA 91:2216-2220.
2. Cheng, S., C. Fockler, W.M. Barnes and R. Higuchi. 1994. Effective amplification of long targets from cloned inserts and human genomic DNA. Proc. Natl. Acad. Sci. USA 91:5695-5699.
3. Cui, X., J. Gerwin, W. Navidi, H. Li., M. Kuehn and N. Arnheim. 1992. Gene-centromere linkage mapping by PCR analysis of individual oocytes. Genomics 13:713-717.
4. Kirkpatrick, B.W. 1992. Identification of a conserved microsatellite site in the porcine and bovine insulin-like growth factor-I gene 5′ flank. Anim. Genet. 23:543-548.
5. Kristjansoon, K., S.S. Chong, I.B. Van der Veyver, S. Subramanian, M.C. Snabes and M.R. Hughes. 1994. Preimplantation single cell analysis of dystrophin gene deletions using whole genome amplification. Nat. Genet. 6:19-23.
6. Lawyer, EC., S. Stoffel, R.K. Saiki, K. Myambo, R. Drummond and D.H. Gelfand. 1989. Isolation, characterization and expression in E. coli of DNA polymerase gene from the extreme Thermophile, Thermus aquaticus. J. Biol. Chem. 264:6427-6437.
7. Miller, S.A., D.D. Dykes and H.F. Polesky. 1988. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16:1215.
8. Nielson, K.B., W. Schoettlin, J.C. Bauer and E. Mathur. 1994. Taq Extender™ PCR Additive for improved length, yield and reliability of PCR products. Strategies Mol. Biol. 7:27.
9. Ott, L. 1988. An introduction to statistical methods and data analysis, 3rd ed. PWS-Kent Publishing Company, Boston.
10. Rohrer, G.A., L.J. Alexander, J.W. Keele, T.P. Smith and C.W. Beattie. 1994. A microsatellite linkage map of the porcine genome. Genetics 136:231-245.
11. Schmitt, K., L.C. Lazzeroni, S. Foote, D. Vollrath, E.M. Fisher, T,M. Goradia, K. Lange, D.C. Page and N. Arnheim. 1994. Multipoint linkage map of the human pseudoautosomal region, based on single sperm typing: do double crossovers occur during male meiosis? Am.J.Hum. Genet. 55:423-430.
12. Snabes, M.C., S.S. Chong, S.B. Subramanian, K. Kristjansoon and D. Disepio. 1994. Preimplantation single-cell analysis of multiple genetic loci by whole genome amplification. Proc. Natl. Acad. Sci. USA 91:6181-6185.
13. Sobral, B.W.S. and R.J. Honneycutt 1993. High output genetic mapping of polyploids using PCR generated markers. Theor. Appl. Genet. 86:105-112.
14. Tabor, S., K. Struhl, S.J. Scharf and D.H. Gelfand. 1989. DNA-dependent DNA polymerases, p. 3.5.1-3.5.3. In F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith and K.S. Struhl (Eds.), Current Protocols in Molecular Biology. Vol. I. John Wiley & Sons, New York.
15. Van Eijk, M.J., I. Russ and H.A. Lewin. 1993. Order of bovine DRB3, DYA and PRL determined by sperm typing. Mamm. Genome 4:113-118.
16. Xu, K., J.A. Grifo, Z. Rosenwaks and J. Cohen. 1993. Primer extension preamplification for detection of multiple genetic loci from single human blastomeres. Hum. Reprod. 8:2206-2210.
17. Zhang, L., X. Cui, K. Schmitt, R. Hubert, W. Navidi and N. Arnheim. 1992. Whole genome amplification from a single cell: implications for genetic analysis. Proc. Natl. Acad. Sci. USA 89:5847-5851.