Structure-based modeling of the ligand binding domain of the human cell surface receptor CD23 and comparison of two independently derived molecular models

Protein Science

Volumn 5, Issue 2, 1996, Pages 240-247

  Bajorath, Jürgen ^a   Aruffo, Alejandro ^a  

^a BRISTOL MYERS SQUIBB   (United States)

Author keywords

C type lectins; CD23; comparative modeling; protein structure prediction; receptor ligand interactions; structure comparison

Indexed keywords

CELL SURFACE RECEPTOR; LECTIN; RECEPTOR PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; LIGAND BINDING; MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

EID: 0030019805     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1002/pro.5560050207     Document Type: Article

References (35)

1. Aubry JP, Pochon S, Gauchat JF, Nueda-Marin A, Holers VM, Graber P, Siegfried C, Bonnefoy JY. 1994. CD23 interacts with a new functional extracytoplasmatic domain involving N-linked oligosaccharides on CD21. J Immunol 152:5806-5813.
2. Bajorath J, Aruffo A. 1994. Molecular model of the extracellular lectin-like domain in CD69. J Biol Chem 269:32451-32463.
3. Bajorath J, Fine RM. 1992. On the use of minimization from many randomly generated loop structures in modeling antibody combining sites, Immunomethods 1:137-146.
4. Bajorath J, Stenkamp R, Aruffo A. 1993. Knowledge-based model building of proteins: Concepts and examples. Protein Sci 2:317-334.
5. Bajorath J, Stenkamp R, Aruffo A. 1995. Comparison of a protein model with its X-ray structure: The ligand binding domain of E-selectin. Bioconjugate Chem 6:3-6.
6. Beavil AJ, Edmeades RL, Gould HJ, Sutton BJ. 1992. α-Helical coiled-coil stalks in the low-affinity receptor for IgE (Fc∈II/CD23) and related C-type lectins. Proc Natl Acad Sci USA 89:753-757.
7. Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer-based archival file for macromolecular structures. J Mol Biol 112:535-542.
8. Bettler B, Texido G, Raggini S, Rüegg D, Hofstetter H. 1992. Immunoglobulin E-binding site in Fc∈ receptor (Fc∈RII/CD23) identified by homologscanning mutagenesis. J Biol Chem 267:185-191.
9. Bonnefoy JY, Aubry JP, Gauchat JF, Graber P, Life P, Flore-Romo L, Mazzei G. 1993. Receptors for IgE. Curr Opin Immunol 5:944-947.
10. Bruccoleri RE, Haber E, Novotny J. 1988. Structure of antibody hypervariable loops reproduced by a conformational search algorithm. Nature 335:564-568.
11. Bruccoleri RE, Novotny J. 1992. Antibody modeling using the conformational search program CONGEN. Immunomethods 1:96-106.
12. Chothia C, Lesk AM. 1986. The relation between the divergence of sequence and structure in proteins. EMBO J 5:823-826.
13. Delespesse G, Sarfati M, Wu CY, Fournier S, Letellier M. 1992. The low affinity receptor for IgE. Immunol Rev 125:77-97.
14. Drickamer K. 1988. Two distinct classes of carbohydrate recognition domains in animal lectins. J Biol Chem 263:9557-9560.
15. 2+-dependent carbohydrate recognition domains in animal proteins. Curr Opin Struct Biol 3:393-400.
16. Erbe DV, Watson SR, Presta LG, Wolitzky BA, Foxall C, Brandley BK, Lasky LA. 1993. P- and E-selectin use common sites for carbohydrate ligand recognition and cell adhesion. J Cell Biol 120:1227-1235.
17. Erbe DV, Wolitzky BA, Presta LG, Norton CR, Ramos RJ, Burns DK, Rumberger JM, Rao NBN, Foxall C, Brandley BK, Lasky LA. 1992. Identification of an E-selectin region critical for carbohydrate recognition and cell adhesion. J Cell Biol 119:215-227.
18. Graves BJ, Crowther RL, Chandran C, Rumberger JM, Li S, Huang KS, Presky DH, Familetti PC, Wolitzky BA, Burns DK. 1994. Insight into E-selectin/ligand interaction from the crystal structure and mutagenesis of the lec/EGF domains. Nature 367:532-538.
19. Hellen EA, Rowlands DC, Hansel TT, Kitas GD, Crocker J. 1991. Immunohistochemical demonstration of CD23 expression on lymphocytes in rheumatoid synovitis. J Clin Pathol 44:293-296.
20. Hollenbaugh D, Bajorath J, Stenkamp R, Aruffo A. 1993. Interaction of P-selectin (CD62) and its cellular ligand: Analysis of critical residues. Biochemistry 32:2960-2966.
21. Jones TA. 1985. Interactive computer graphics: FRODO. Methods Enzymol 115:157-171.
22. Kikutani H, Inui S, Sato R, Barsumian EL, Owaki H, Yamasaki K, Kaisho T, Uchibayashi N, Hardy RR, Hirano T, Tsunasawa S, Sakiyama F, Suemura M, Kishimoto T. 1986. Molecular structure of human lymphocyte receptor for immunoglobulin E. Cell 47:867-885,
23. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. 1993. PROCHECK: A program to check the stereochemical quality of protein structures. J Appl Crystallogr 26:283-291.
24. Lecoanet-Henchoz S, Gauchat JF, Aubry JP, Graber P, Life P, Paul-Eugene N, Ferrua B, Corbi AL, Dugas B, Plater-Zyberk C, Bonnefoy JY. 1995. CD23 regulates monocyte activation through a novel interaction with the adhesion molecules CD11b-CDJS and CD11c-CD18. Immunity 3:119-125.
25. Mills A. 1994. Modelling of the carbohydrate recognition domain of human E-selectin. FEBS Lett 319:5-11.
26. Padlan EA, Helm BA. 1993. Modeling of the lectin-homology domains of the human and murine low-affinity Fc∈ receptor (Fc∈RII/CD23). Receptor 3:325-341.
27. Plater-Zyberk C, Bonnefoy JY. 1995. Marked amelioration of established collagen-induced arthritis by treatment with antibodies to CD23 in vivo. Nature Medicine 1:781-785.
28. Ponder JW, Richards FM. 1987. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol 193:775-791.
29. Richards ML, Katz DH. 1991. Biology and chemistry of the low affinity IgE receptor (Fc∈RII/CD23). Crit Rev Immunol 11:65-86.
30. Sheriff S, Chang CY, Ezekowitz RAB. 1994. Human mannose-binding protein carbohydrate recognition domain trimerizes through a triple α-helical coiled-coil. Nature Struct Biol 1:789-793.
31. Sippl MJ. 1993. Recognition of errors in three-dimensional structures of proteins. Proteins Struct Funct Genet 17:355-362.
32. Weis WI, Drickamer K. 1994. Trimeric structure of a C-type mannose-binding protein. Structure 2:1227-1240.
33. Weis WI, Drickamer K, Hendrickson WA. 1992. Structure of a C-type mannose-binding protein complexed with an oligosaccharide. Nature 360:127-134.
34. Weis WI, Kahn R, Fourme R, Drickamer K, Hendrickson WA. 1991. Structure of the calcium-dependent lectin domain from a rat mannose-binding protein determined by MAD phasing. Science 254:1608-1615.
35. Yukawa K, Kikutani H, Howaki H, Yamasaki K, Yokota A, Nakamura H, Barsumian EL, Hardy RR, Suemura M, Kishimoto T. 1987. A B cell specific differentiation antigen, CD23, is a receptor for IgE (Fc∈R) on lymphocytes. J Immunol 38:2576-2580.