-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen, C.B. Principles that govern the folding of protein chains. Science 181:223-230, 1973.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
2
-
-
0025040232
-
De novo design, expression and characterization of Felix: A four-helix bundle protein of native-like sequence
-
Hecht, M.H., Richardson, J.S., Richardson, D.C., Ogden, R.C. De novo design, expression and characterization of Felix: A four-helix bundle protein of native-like sequence. Science 249:884-891, 1990.
-
(1990)
Science
, vol.249
, pp. 884-891
-
-
Hecht, M.H.1
Richardson, J.S.2
Richardson, D.C.3
Ogden, R.C.4
-
3
-
-
0026635178
-
De novo design, synthesis and study of albebetin, a polypeptide with a predetermined three dimensional structure
-
Fedorov, A.N., Dolgikh, D.A., Chemeris, V.V., Chernov, B.K., Finkelstein, A.V., Schulga, A.A., Alakhov, Y., Kirpichnikov, M.P., Ptitsyn, O.B. De novo design, synthesis and study of albebetin, a polypeptide with a predetermined three dimensional structure. J. Mol. Biol. 225:927-931, 1992.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 927-931
-
-
Fedorov, A.N.1
Dolgikh, D.A.2
Chemeris, V.V.3
Chernov, B.K.4
Finkelstein, A.V.5
Schulga, A.A.6
Alakhov, Y.7
Kirpichnikov, M.P.8
Ptitsyn, O.B.9
-
4
-
-
0027249641
-
De novo protein design: From molten globules to native-like states
-
Betz, S.F., Raleigh, D.P., DeGrado, W.F. De novo protein design: From molten globules to native-like states. Curr. Opin. Struct. Biol. 3:601-610, 1993.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 601-610
-
-
Betz, S.F.1
Raleigh, D.P.2
DeGrado, W.F.3
-
5
-
-
0028587717
-
Betadoublet: De novo design, synthesis, and characterization of a β-sandwich protein
-
Quinn, T.P., Tweedy, N.B., Williams, R.W., Richardson, J.S., Richardson, D.C. Betadoublet: De novo design, synthesis, and characterization of a β-sandwich protein. Proc. Natl. Acad. Sci. USA 91:8747-8751, 1994.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 8747-8751
-
-
Quinn, T.P.1
Tweedy, N.B.2
Williams, R.W.3
Richardson, J.S.4
Richardson, D.C.5
-
6
-
-
0029117449
-
In search of the ideal protein sequence
-
Godzik, A. In search of the ideal protein sequence. Protein Eng. 8:409-416, 1995.
-
(1995)
Protein Eng.
, vol.8
, pp. 409-416
-
-
Godzik, A.1
-
7
-
-
0028326042
-
Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin
-
Kolinski, A., Skolnick, J. Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin. Proteins 18:353-366, 1994.
-
(1994)
Proteins
, vol.18
, pp. 353-366
-
-
Kolinski, A.1
Skolnick, J.2
-
8
-
-
0019522383
-
Crystallographic refinement and atomic models of a human FC fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9 Å resolution
-
Deisenhofer, J. Crystallographic refinement and atomic models of a human FC fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9 Å resolution. Biochemistry 20:2361, 1981.
-
(1981)
Biochemistry
, vol.20
, pp. 2361
-
-
Deisenhofer, J.1
-
9
-
-
0026801084
-
Three-dimensional solution structure of the B-domain of staphylococcal protein A: Comparisons of the solution and crystal structures
-
Gouda, H., Torigoe, H., Saito, A., Sato, M., Arata, Y., Schimada, I. Three-dimensional solution structure of the B-domain of staphylococcal protein A: Comparisons of the solution and crystal structures. Biochemistry 40:9665-9672, 1992.
-
(1992)
Biochemistry
, vol.40
, pp. 9665-9672
-
-
Gouda, H.1
Torigoe, H.2
Saito, A.3
Sato, M.4
Arata, Y.5
Schimada, I.6
-
10
-
-
0023291089
-
A synthetic IgG-binding domain based on staphylococcal protein A
-
Nilsson, B., Moks, T., Jansson, B., Abrahamsen, L., Elmblad, A., Holmgren, E., Henrichson, C., Jones, T.A., Uhlen, M. A synthetic IgG-binding domain based on staphylococcal protein A. Protein Eng. 1:107-113, 1987.
-
(1987)
Protein Eng.
, vol.1
, pp. 107-113
-
-
Nilsson, B.1
Moks, T.2
Jansson, B.3
Abrahamsen, L.4
Elmblad, A.5
Holmgren, E.6
Henrichson, C.7
Jones, T.A.8
Uhlen, M.9
-
11
-
-
0027195207
-
Mutational analysis of the interactions between staphylococcal protein A and human IgG1
-
Cedergren, L., Andersson, R., Jansson, B., Uhlen, M., Nilsson, B. Mutational analysis of the interactions between staphylococcal protein A and human IgG1. Protein Eng. 6:441-448, 1993.
-
(1993)
Protein Eng.
, vol.6
, pp. 441-448
-
-
Cedergren, L.1
Andersson, R.2
Jansson, B.3
Uhlen, M.4
Nilsson, B.5
-
12
-
-
0027268174
-
An improved strategy for determining resonance assignments for isotopically enriched proteins and its application to an engineered domain of staphylococcal protein A
-
Lyons, B.A., Tashiro, M., Cedergren, L., Montelione, G.T. An improved strategy for determining resonance assignments for isotopically enriched proteins and its application to an engineered domain of staphylococcal protein A. Biochemistry 32:7839-7845, 1993.
-
(1993)
Biochemistry
, vol.32
, pp. 7839-7845
-
-
Lyons, B.A.1
Tashiro, M.2
Cedergren, L.3
Montelione, G.T.4
-
13
-
-
0017429069
-
Areas, volumes, packing and protein structure
-
Richards, F.M. Areas, volumes, packing and protein structure. Annu. Rev. Biophys. Bioeng. 6:151-176, 1977.
-
(1977)
Annu. Rev. Biophys. Bioeng.
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
14
-
-
0025363984
-
Deciphering the message in protein sequences: Tolerance to amino acid substitutions
-
Bowie, J.U., Reidhaar, O.J.F., Lim, W.A., Sauer, R.T. Deciphering the message in protein sequences: Tolerance to amino acid substitutions. Science 247:1306-1310, 1990.
-
(1990)
Science
, vol.247
, pp. 1306-1310
-
-
Bowie, J.U.1
Reidhaar, O.J.F.2
Lim, W.A.3
Sauer, R.T.4
-
15
-
-
0027256739
-
Hydrogen bonding, hydrophobicity, packing, and protein folding
-
Rose, G.D., Wolfenden, R. Hydrogen bonding, hydrophobicity, packing, and protein folding. Annu. Rev. Biophys. Biomol. Struct. 22:381-415, 1993.
-
(1993)
Annu. Rev. Biophys. Biomol. Struct.
, vol.22
, pp. 381-415
-
-
Rose, G.D.1
Wolfenden, R.2
-
16
-
-
0024293204
-
Conformation of peptide fragments of proteins in aqueous solution
-
Wright, P.E., Dyson, H.J., Lerner, R.A. Conformation of peptide fragments of proteins in aqueous solution. Biochemistry 27:7167-7175, 1988.
-
(1988)
Biochemistry
, vol.27
, pp. 7167-7175
-
-
Wright, P.E.1
Dyson, H.J.2
Lerner, R.A.3
-
17
-
-
0023970696
-
Chain reversal in model peptides: Studies of cysteine-containing cyclic peptides
-
Milburn, P.J., Meinwald, Y.C., Takahashi, S., Ooi, T., Scheraga, H.A. Chain reversal in model peptides: Studies of cysteine-containing cyclic peptides. Int. J. Pept. Protein Res. 31:311-321, 1988.
-
(1988)
Int. J. Pept. Protein Res.
, vol.31
, pp. 311-321
-
-
Milburn, P.J.1
Meinwald, Y.C.2
Takahashi, S.3
Ooi, T.4
Scheraga, H.A.5
-
18
-
-
0025269274
-
Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. I. Six member, Greek key β-barrels
-
Skolnick, J., Kolinski, A. Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. I. Six member, Greek key β-barrels. J. Mol Biol. 212:787-817, 1990.
-
(1990)
J. Mol Biol.
, vol.212
, pp. 787-817
-
-
Skolnick, J.1
Kolinski, A.2
-
19
-
-
0025271503
-
Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. II. α-helical motifs
-
Sikorski, A., Skolnick, J. Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. II. α-helical motifs. J. Mol. Biol. 212:819-836, 1990.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 819-836
-
-
Sikorski, A.1
Skolnick, J.2
-
20
-
-
0026667399
-
Role of loop-helix interactions in stabilizing four-helix bundle proteins
-
Chou, K.C., Maggiora, G.M., Scheraga, H.A. Role of loop-helix interactions in stabilizing four-helix bundle proteins. Proc. Natl. Acad. Sci. USA 89:7315-7319, 1992.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 7315-7319
-
-
Chou, K.C.1
Maggiora, G.M.2
Scheraga, H.A.3
-
21
-
-
0001079105
-
On the use of sequence homologies to predict protein structure: Identical pentapeptides can have completely different conformations
-
Kabsch, W., Sander, C. On the use of sequence homologies to predict protein structure: Identical pentapeptides can have completely different conformations. Proc. Natl. Acad. Sci. USA 81:1075-1078, 1984.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 1075-1078
-
-
Kabsch, W.1
Sander, C.2
-
22
-
-
0023193211
-
Analysis of sequence-similar pentapeptides in unrelated protein tertiary structures
-
Argos, P. Analysis of sequence-similar pentapeptides in unrelated protein tertiary structures. J. Mol. Biol. 197: 331-348, 1987.
-
(1987)
J. Mol. Biol.
, vol.197
, pp. 331-348
-
-
Argos, P.1
-
23
-
-
0027265713
-
The role of turns in the structure of an α-helical protein
-
Brunet, A.P., Huang, E.S., Huffine, M.E., Loeb, J.E., Weltman, R.J., Hecht, M.H. The role of turns in the structure of an α-helical protein. Nature 364:355-358, 1993.
-
(1993)
Nature
, vol.364
, pp. 355-358
-
-
Brunet, A.P.1
Huang, E.S.2
Huffine, M.E.3
Loeb, J.E.4
Weltman, R.J.5
Hecht, M.H.6
-
24
-
-
0028518995
-
Restored heptad pattern continuity does not alter the folding of a four-alpha-helix bundle
-
Vlassi, M., Steif, C., Weber, P., Tsernoglou, D., Wilson, K.S., Hinz, H.J., Kokkinidis, M. Restored heptad pattern continuity does not alter the folding of a four-alpha-helix bundle. Nature Struct. Biol. 1:706-716, 1994.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 706-716
-
-
Vlassi, M.1
Steif, C.2
Weber, P.3
Tsernoglou, D.4
Wilson, K.S.5
Hinz, H.J.6
Kokkinidis, M.7
-
25
-
-
0029090925
-
Redesigning the topology of a four-helix-bundle protein: Monomeric ROP
-
Predki, P.F., Regan L., Redesigning the topology of a four-helix-bundle protein: Monomeric ROP. Biochemistry 34: 9834-9839, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 9834-9839
-
-
Predki, P.F.1
Regan, L.2
-
26
-
-
0028203492
-
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme
-
Kolinski, A., Skolnick, J. Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme. Proteins 18:338-352, 1994.
-
(1994)
Proteins
, vol.18
, pp. 338-352
-
-
Kolinski, A.1
Skolnick, J.2
-
27
-
-
0001222580
-
Lattice representation of globular proteins: How good are they?
-
Godzik, A., Kolinski, A., Skolnick, J. Lattice representation of globular proteins: How good are they? J. Comp. Chem. 14:1194-1202, 1993.
-
(1993)
J. Comp. Chem.
, vol.14
, pp. 1194-1202
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
28
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis, N.A., Rosenbluth, A.W., Rosenbluth, M.N., Teller, A.H., Teller, E. Equation of state calculations by fast computing machines. J. Chem. Phys. 21:1087-1092, 1953.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.A.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
29
-
-
9344219935
-
-
Set Available Via Anonymous from /Pub/skolnick/mutant directory
-
Skolnick, J. Lattice parameter set available via anonymous ftp from ftp.scripps.edu from /pub/skolnick/mutant directory. 1995.
-
(1995)
Lattice Parameter
-
-
Skolnick, J.1
-
30
-
-
0029040771
-
Neural network system for the evaluation of side chain packing in protein structures
-
Milik, M., Kolinski, A., Skolnick, J. Neural network system for the evaluation of side chain packing in protein structures. Protein Eng. 8:225-236, 1995.
-
(1995)
Protein Eng.
, vol.8
, pp. 225-236
-
-
Milik, M.1
Kolinski, A.2
Skolnick, J.3
-
31
-
-
0028290433
-
Prediction of the folding pathways and structure of the GCN4 leucine zipper
-
1994
-
Vieth, M., Kolinski, A., Brooks III, C.L., Skolnick, J. Prediction of the folding pathways and structure of the GCN4 leucine zipper. J. Mol. Biol. 1994:361-367, 1994.
-
(1994)
J. Mol. Biol.
, pp. 361-367
-
-
Vieth, M.1
Kolinski, A.2
Brooks III, C.L.3
Skolnick, J.4
-
32
-
-
0029987096
-
Does a back-wardly read protein sequence have a unique native state?
-
Olszewski, K.A., Kolinski, A., Skolnick, J. Does a back-wardly read protein sequence have a unique native state? Protein Eng. 9:5-14, 1996.
-
(1996)
Protein Eng.
, vol.9
, pp. 5-14
-
-
Olszewski, K.A.1
Kolinski, A.2
Skolnick, J.3
-
33
-
-
0025759275
-
The protein-folding problem: The native fold determines packing, but does packing determine the native fold
-
Behe, M.J., Lattman, E.E., Rose, G.D. The protein-folding problem: The native fold determines packing, but does packing determine the native fold. Proc. Natl. Acad. Sci. USA 88:4195-4199, 1991.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 4195-4199
-
-
Behe, M.J.1
Lattman, E.E.2
Rose, G.D.3
-
34
-
-
0024279235
-
Analysis and prediction of the different types of β-turn in proteins
-
Wilmot, C.M., Thornton, J.M. Analysis and prediction of the different types of β-turn in proteins. J. Mol. Biol. 203: 221-232, 1988.
-
(1988)
J. Mol. Biol.
, vol.203
, pp. 221-232
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
35
-
-
0028217290
-
The lcrB (yscN-U) gene cluster of Yersinia, pseudotuberculosis is involved in Yop secretion and shows high homology to the spa gene clusters of Chigella flexneri and Salmonella typhimirium
-
Bergman, T., Erickson, K., Galyov, E., Persson, C., Wolf-Watz, H. The lcrB (yscN-U) gene cluster of Yersinia, pseudotuberculosis is involved in Yop secretion and shows high homology to the spa gene clusters of Chigella flexneri and Salmonella typhimirium. J. Bacteriol. 176:2619-2626, 1994.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2619-2626
-
-
Bergman, T.1
Erickson, K.2
Galyov, E.3
Persson, C.4
Wolf-Watz, H.5
-
36
-
-
0026339039
-
Primary structure of the catalytic subunit of calf thymus DNA polymerase delta. Sequence similarities with other DNA polymerases
-
C.K., T.
-
Zhang, J., Chung, D.W., C.K., T., Downey, K.M., Davie, E.W., So, A.G. Primary structure of the catalytic subunit of calf thymus DNA polymerase delta. Sequence similarities with other DNA polymerases. Biochemistry 30:11742-11750, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 11742-11750
-
-
Zhang, J.1
Chung, D.W.2
Downey, K.M.3
Davie, E.W.4
So, A.G.5
-
37
-
-
84989762359
-
Cloning and expression of a gene encoding a root specific nitrate reductase in bean Phaseolus vulgaris
-
Hoff, T., Stummann, B.M., Henningsen, K.W. Cloning and expression of a gene encoding a root specific nitrate reductase in bean Phaseolus vulgaris. Physiol. Plantarum 82: 197-204, 1991.
-
(1991)
Physiol. Plantarum
, vol.82
, pp. 197-204
-
-
Hoff, T.1
Stummann, B.M.2
Henningsen, K.W.3
-
38
-
-
0028071564
-
The SWISS-PROT protein sequence data bank: Current status
-
Bairoch, A., Boeckmann, B. The SWISS-PROT protein sequence data bank: Current status. Nucleic Acids Res. 22: 3578-3580, 1994.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3578-3580
-
-
Bairoch, A.1
Boeckmann, B.2
-
39
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer Jr, E.F., Brice, M.D., Rodgers, J.R., Kennard, O., Simanouchi, T., Tasumi, M. The protein data bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Simanouchi, T.8
Tasumi, M.9
-
40
-
-
0004023361
-
-
University of California, San Francisco
-
Pearlman, D.A., Case, D.A., Caldwell, J.C., Seibel, G.L., Singh, U.C., Weiner, P., Kollman, P.A. AMBER. University of California, San Francisco, 1991, 4.0.
-
(1991)
AMBER
, pp. 40
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.C.3
Seibel, G.L.4
Singh, U.C.5
Weiner, P.6
Kollman, P.A.7
-
41
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W.L., Chandrasekhar, J., Madura, J.D., Impey, R.W., Klein, M.L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935, 1983.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
|