The nuclear Kluyveromyces lactis MRF1 gene encodes a mitochondrial class I peptide chain release factor that is important tor cell viability

Current Genetics

Volumn 30, Issue 1, 1996, Pages 19-28

  Pel, Herman J ^a,b   Rozenfeld, Sophie ^a   Bolotin Fukuhara, Monique ^a  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b UNIVERSITY OF OTAGO   (New Zealand)

Author keywords

Kluyveromyces lactis; Mitochondrial release factor; MRF1; Peptide chain termination

Indexed keywords

GLYCEROL; PEPTIDE CHAIN RELEASE FACTOR; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CELL VIABILITY; CONTROLLED STUDY; FUNGAL GENETICS; FUNGUS GROWTH; GENE EXPRESSION; GENE FUNCTION; GENE ISOLATION; GENE REPRESSION; KLUYVEROMYCES; MITOCHONDRION; NONHUMAN; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; CELL NUCLEUS; CHROMOSOME MAPPING; CLONING, MOLECULAR; FUNGAL PROTEINS; GENES, BACTERIAL; GENES, FUNGAL; KLUYVEROMYCES; LISTERIA MONOCYTOGENES; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; PEPTIDE TERMINATION FACTORS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS;

FUNGI; KLUYVEROMYCES; KLUYVEROMYCES LACTIS; PROKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0030017717     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002940050095     Document Type: Article

References (59)

1. Berben G, Dumont J, Gilliquet V, Bolle P-A, Hilger F (1991) The YDP plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae. Yeast 7:475-477
2. Boeke JD, Lacroute F, Fink GR (1984) A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197:345-346
3. Brimacombe R, Atmadja J, Stiege W, Schüler D (1988) A detailed model of the three-dimensional structure of Escherichia coli 16S ribosomal RNA in situ in the 30S subunit. J Mol Biol 199:115-136
4. Brown CM, Tate WP (1994) Direct recognition of mRNA stop signals by Escherichia coli polypeptide chain release factor 2. J Biol Chem 269:33164-33170
5. Brunner A, Coria R (1989) Cloning and sequencing of the gene for apocytochrome b of the yeast Kluyveromyces lactis strains WM27 (NRRL Y-17066) and WM37 (NRRL Y-1140). Yeast 5:209-218
6. Bulder CGEA (1964) Lethality of the petite mutation in petite-negative yeasts. Ant van Leeuwenhoek 30:442-454
7. Capecchi MR, Klein HA (1969) Characterization of three proteins involved in polypeptide chain termination. Cold Spring Harbor Symp Quant Biol 34:469-477
8. Caskey T, Scolnick E, Tompkins R, Goldstein J, Milman G (1969) Peptide chain termination, codon, protein factor and ribosomal requirements. Cold Spring Harbor Symp Quant Biol 34:479-488
9. Chen D-C Yang B-C, Kuo T-T (1992) One-step transformation of yeast in stationary phase. Curr Genet 21:83-84
10. Chen XJ, Clark-Walker GD (1993) Mutations in MGI genes convert Kluyveromyces lactis into a petite-positive yeast. Genetics 133:517-525
11. Chen XJ, Saliola M, Falcone C, Bianchi MM, Fukuhara H (1986) Sequence organization of the circular plasmid pKD1 from the yeast Kluyveromyces drosophilarum. Nucleic Acids Res 14:4471-4481
12. Chou PY, Fasman GD (1978) Prediction of the secondary structure of proteins from their amino acid sequence. Adv Enzymol 47:45-148
13. Craigen WJ, Caskey CT (1986) Expression of peptide chain release factor 2 requires high-efficiency frameshift. Nature 322:273-275
14. Craigen WJ, Cook RG, Tate WP, Caskey CT (1985) Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2. Proc Natl Acad Sci USA 82:3616-3620
15. Craigen WJ, Lee CC, Caskey CT (1990) Recent advances in peptide chain termination. Mol Microbiol 4:861-865
16. Doolittle RF (1981) Similar amino acid sequences: chance or common ancestry? Science 214:149-159
17. Dooliltle RF (1986) Of urfs and orfs. A primer on how to analyze derived amino acid sequences. Mill Valley, pp 3-17
18. Eggertsson G, Söll D (1988) Transfer ribonucleic acid mediated suppression of termination codons in Escherichia coli. Microbiol Rev 52:354-374
19. Elliott T (1989) Cloning, genetic characterization, and nucleotide sequence of the hemA-prfA operon of Salmonella typhimurium. J Bacteriol 171:3948-3960
20. Elliott T, Wang XH (1991) Salmonella typhimurium prfA mutants defective in release factor-1. J Bacteriol 173:4144-4154
21. Fleig UN, Pridmore RD, Philippsen P (1986) Construction of LYS2 cartridges for use in genetic manipulations of Saccharomyces cerevisiae. Gene 46:237-245
22. Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb J-F, Dougherty BA, Merrick JM, McKenney K, Sutton G, FitzHugh W, Fields CA, Gocayne JD, Scott JD, Shirley R, Liu L-I, Glodek A, Kelley JM, Weidman JF, Phillips CA, Spriggs T, Hedblom E, Cotton MD, Utterback TR, Hanna MC, Nguyen DT, Saudek DM, Brandon RC, Fine LD, Fritchman JL, Fuhrmann JL, Geoghagen NSM, Gnehm CL, McDonald LA, Small KV, Fraser CM, Smith HO, Venter JC (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512
23. Frolova L, Le Goff X, Rasmussen HH, Cheperegin S, Drugeon G, Kress M, Arman I, Haenni A-L, Cells JE, Philippe M, Justesen J, Kisselev L (1994) A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor. Nature 372:701-703
24. Garnier J, Osguthorpe DJ, Robson B (1978) Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J Mol Biol 120:97-120
25. Gietz RD, Sugino A (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527-534
26. Goldstein JL, Caskey CT (1970) Peptide chain termination: effect of protein S on ribosomal binding of release factors. Proc Natl Acad Sci USA 67:537-543
27. Grentzmann G, Brechemier-Baey D, Heurgue V, Mora L, Buckingham R (1994) Localisation and characterisation of the gene encoding release factor RF3 in Escherichia coli. Proc Natl Acad Sci USA 91:5848-5852
28. Hartl FU, Pfanner N, Nicholson DW, Neupert W (1989) Mitochondrial protein import. Biochim Biophys Acta 988:1-45
29. Hill JE, Myers AM, Koerner TJ, Tzagoloff A (1986) Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2:163-167
30. Hungerer C, Troup B, Römling U, Jahn D (1995) Regulation of the hemA gene during 5-aminolevulinic acid formation in Pseudomonas aeruginosa. J Bacteriol 177:1435-1443
31. Kawakami K, Nakamura Y (1990) Autogenous suppression of an opal RF2 mutation. Proc Natl Acad Sci USA 87:8432-8436
32. Konecki DS, Aune KC, Tale WP, Caskey CT (1977) Characterization of reticulocyte release factor. J Biol Chem 252:4514-4520
33. Lee CC, Timms, KM, Trotman, CNA, Tate WP (1987) Isolation of a rat mitochondrial release factor. J Biol Chem 262:3548-3552
34. Lee CC, Kohara Y, Akiyama K, Smith CL, Craigen WJ, Caskey CT (1988) Rapid and precise mapping of the Escherichia coli release factor genes by two physical approaches. J Bacteriol 170:4537-4541
35. Martin NC, Pham HD, Underbrink-Lyon K, Miller DL, Donelson JE (1980) Yeast mitochondrial tRNA trp can recognize the nonsense codon UGA. Nature 285:579-581
36. McCaughan KK, Ward CD, Trotman CNA, Tate WP (1984) The ribosomal binding domain for the bacterial release factors RF-1, RF-2 and RF-3. FEBS Lett 175:90-94
37. McCusker JH, Davis RW (1991) The use of proline as nitrogen source causes hypersensitivity to, and allows more economical use of, 5FOA. Yeast 7:607-608
38. Mikuni O, Ito K, Moffat J, Matsumura K, McCaughan K, Nobukuni T, Tate W, Nakamura Y (1994) Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli. Proc Natl Acad Sci USA 91:5798-5802
39. Mikuni O, Kawakami K, Nakamura Y (1991) Sequence and functional analysis of mutations in the gene encoding peptide chain release factor 2 of Escherichia coli. Biochimie 73:1509-1516
40. Moffat JG, Tate WP (1994) A single proteolytic cleavage in release factor 2 stabilizes ribosome binding and abolishes peptidyl-tRNA hydrolysis activity. J Biol Chem 269:18899-18903
41. Mulder W, Scholten IHJM, de Boer RW, Grivell LA (1994) Sequence of the HAP3 transcription factor of Kluyveromyces lactis predicts the presence of a novel 4-cysteine zinc finger motif. Mol Gen Genet 245:96-106
42. Myers AM, Pape LK, Tzagoloff A (1985) Mitochondrial protein synthesis is required for maintenance of intact mitochondrial genomes in Saccharomyces cerevisiae. EMBO J 4:2087-2092
43. Ogawara H, Urabe H, Ohtaki R, Nakamura Y (1995) Properties of peptide chain release factor 2 from Streptomycin coelicolor A3(2):conserved primary structure but no frameshift regulation. J Bacteriol 177:5342-5345
44. Paul MF, Velours J, Arselinde-Chateaubodeau G, Aigle M, Guérin B (1989) The role of subunit 4, a nuclear-encoded protein of the Fo sector of yeast mitochondrial ATP synthase, in the assembly of the whole complex. Eur J Biochem 185:163-171
45. Pearson WR (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183:63-98
46. Pel HJ, Maat C, Rep M, Grivell LA (1992a) The yeast nuclear gene MRF1 encodes a mitochondrial peptide chain release factor and cures several mitochondrial RNA splicing defects. Nucleic Acids Res 20:6339-6346
47. Pel HJ, Rep M, Grivell LA (1992b) Sequence comparison of new prokaryotic and mitochondrial members of the polypeptide chain release factor family predicts a five-domain model for release factor structure. Nucleic Acids Res 20:4423-4428
48. Pel HJ, Rep M, Dubbink HJ, Grivell LA (1993) Single point mutations in domain II of the yeast mitochondrial release factor mRF-1 affect ribosome binding. Nucleic Acids Res 21: 5308-5315
49. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor, Laboratory Cold Spring Harbor, New York
50. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
51. Scolnick E, Tompkins R, Caskey CT, Nirenberg M (1968) Release factors differing in specificity for termination codons. Proc Natl Acad Sci USA 61:768-774
52. Stöffler G, Tate WP, Caskey CT (1982) Ribosomal proteins cross-linked to peptide chain termination release factor 2. J Biol Chem 257:4203-4206
53. Stansfield I, Jones K, Kushnirov VK, Dagkesamanskaya AR, Poznyakovski AI, Paushkin SV, Nierras CR, Cox BS, Ter-Avanesyan MD, Tuite MF (1995) The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae. EMBO J 14:4365-4373
54. Strathern JN, Higgins DR (1991) Recovery of plasmids from yeast into Escherichia coli shuttle vectors. Methods Enzymol 194:322-323
55. Tate WP, Brown CM (1992) Translational termination: 'stop' for protein synthesis or 'pause' for regulation of gene expression. Biochemistry 31:2443-2450.
56. Weiss RB, Dunn DM, Dahlberg AE, Atkins JF, Gesteland RF (1988) Reading frame shift caused by base pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli. EMBO J 7:1503-507
57. Wilson C, Ragnini A, Fukuhara H (1989) Analysis of the regions for transfer RNAs in Kluyveromyces lactis mitochondrial DNA. Nucleic Acids Res 17:4485-4491
58. Zhang S, Rydén-Aulin M, Kirsebom LA, Isaksson LA (1994) Genetic implication for an interaction between release factor 1 and ribosomal protein L7/L12. J Mol Biol 242:614-618
59. Zhouravleva G, Frolova L, Le Goff X, Le Guellec R, Inge-Vechtomov S, Kisselev L, Philippe M (1995) Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J 14:4065-4072