Characterization of a chromosome-specific chimpanzee alpha satellite subset: Evolutionary relationship to subsets on human chromosomes

Genomics

Volumn 33, Issue 2, 1996, Pages 220-228

  Warburton, Peter E ^a,d   Haaf, Thomas ^b   Gosden, John ^a   Lawson, Diane ^a   Willard, Huntington F ^c  

^a WESTERN GENERAL HOSPITAL   (United Kingdom)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^c CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

SATELLITE DNA;

ANIMAL CELL; ARTICLE; CHIMPANZEE; CHROMOSOMAL LOCALIZATION; CHROMOSOME 12; CHROMOSOME 17; CHROMOSOME STRUCTURE; CONTROLLED STUDY; DNA SEQUENCE; EVOLUTION; FLUORESCENCE MICROSCOPY; HUMAN; HUMAN CELL; IN SITU HYBRIDIZATION; LYMPHOBLAST; MALE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SOUTHERN BLOTTING;

EID: 0030011910     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.0187     Document Type: Article

References (40)

1. Alexandrov, I. A., Mashkova, T. D., Akopian, T. A., Medvedev, L. I., Kisselev, L. L., Mitkevich, S. P., and Yurov, Y. B. (1991). Chromosome-specific alpha satellites: Two distinct families on human chromosome 18. Genomics 11: 15-23.
2. Archidiacono, N., Antonacci, R., Marzella, R., Finnelli, P., Lonoce, A., and Rocchi, M. (1995). Comparative mapping of human alphoid sequences in great apes using fluorescence in situ hybridization. Genomics 25: 477-484.
3. Baldini, A., Miller, D. A., Shridhar, V., Rocchi, M., Miller, O. J., and Ward, D. C. (1991a). Comparative mapping of a gorilla-derived clone on great ape and human chromosomes. Chromosoma 101: 109-114.
4. Baldini, A., Miller, D. A., Miller, O. J., Ryder, O. A., and Mitchell, A. R. (1991b). A chimpanzee-derived chromosome-specific alpha satellite DNA conserved between chimpanzee and human. Chromosoma 100: 156-161.
5. Baldini, A., Archidiacono, N., Carbone, R., Bolino, A., Shridhar, V., Miller, O. J., Miller, D. A., Ward, D. C., and Rocchi, M. (1992). Isolation and comparative mapping of a human chromosome 20-specific alpha satellite DNA clone. Cytogenet. Cell Genet. 59: 12-16.
6. Choo, K. H., Vissel, B., Nagy, A., Earle, E., and Kalitsis, P. (1991). A survey of the genomic distribution of alpha satellite DNA on all human chromosomes, and derivation of a new consensus sequence. Nucleic Acids Res. 19: 1179-1182.
7. Collins, C., Kuo, W. L., Segraves, R., Pinkel, D., Fuscoe, J., and Gray, J. W. (1991). Construction and characterization of plasmid libraries enriched in sequences from single human chromosomes. Genomics 11: 997-1006.
8. D'Aiuto, L., Antonacci, R., Marzella, R., Archidiacono, N., and Rochi, M. (1993). Cloning and comparative mapping of a human chromosome 4-specific alpha satellite DNA sequence. Genomics 18: 230-235.
9. Dover, G. A. (1986). Molecular drive in multigene families: How biological novelties arise, spread and are assimilated. Trends Genet. 2: 159-165.
10. Durfy, S. J., and Willard, H. F. (1990). Concerted evolution of primate alpha satellite DNA: Evidence for an ancestral sequence shared by gorilla and human X chromosome alpha satellite. J. Mol. Biol. 216: 555-566.
11. Haaf, T., and Willard, H. F. (1992). Organization, polymorphism, and molecular cytogenetics of chromosome-specific alpha satellite DNA from the centromere of chromosome 2. Genomics 13: 122-128.
12. Gingrich, J., Garnes, J., Boehrer, D., Bergmann, A., Eveleth, J., Johnson, W., Wong, B., Langolis, R., and Carrano, A. (1994). Generation of chromosome-2 specific clone libraries. Cytogenet. Cell Genet. 67: 241-242.
13. Gosden, J., Hanratty, D., Starling, J., Fantes, J., Mitchell, A., and Porteous, D. (1991). Oligonucleotide-pimed in situ DNA synthesis (PRINS): A method for chromosome mapping, banding, and investigation of sequence organization. Cytogenet. Cell Genet. 57: 100-104.
14. Gosden, J., and Lawson, D. (1994). Rapid chromosome identification by oligonucleotide-primed in situ DNA synthesis (PRINS). Hum. Mol. Genet. 3: 931-936.
15. Gray, K. M., White, J. W., Costanzi, C., Gillespie, D., Schroeder, W. T., Calabretta, B., and Saunders, G. F. (1985). Recent amplification of an alpha satellite DNA in humans. Nucleic Acids Res. 13: 521-535.
16. Ioannou, P. A., Amemiya, C. T., Games, J., Kroisel, P. M., Shizuya, H., Chen, C., Batzer, M. A., and de Jong, P. J. (1994). A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet. 6: 84-89.
17. Jauch, A., Wienberg, J., Stanyon, R., Arnold, S., Tofanelli, S., Ishida, T., and Cremer, T. (1992). Reconstruction of genomic rearrangements in great apes and gibbons by chromosome painting. Proc. Natl. Acad. Sci. USA 89: 8611-8615.
18. Jorgensen, A. L., Laursen, H. B., Jones, C., and Bak, A. L. (1992). Evolutionarily different alphoid repeat DNA on homologous chromosomes in human and chimpanzee. Proc. Natl. Acad. Sci. USA 89: 3310-3314.
19. Laursen, H. B., Jorgensen, A. L., Jones, C., and Bak, A. L. (1992). Higher rate of evolution of X chromosome alpha repeat DNA in human than in great apes. EMBO J. 11: 2367-2372.
20. Lu-Kuo, J., Ward, D. C., and Spritz, R. A. (1993). Fluorescence in situ hybridization mapping of 25 markers on distal human chromosome 2q surrounding the human Wardenburg syndrome, type I (WS1) locus (PAX3 gene). Genomics 16: 173-179.
21. Mahtani, M. M., and Willard, H. F. (1990). Pulsed-field gel analysis of alpha satellite DNA at the human X chromosome: High frequency polymorphisms and array size estimate. Genomics 7: 607-613.
22. Maio, J. J. (1971). DNA strand reassociation and polyribonucleotide binding in the African Green Monkey, Cercopithecus aethiops. J. Mol. Biol. 56: 579-595.
23. Miller, D. A. (1977). Evolution of primate chromosomes. Science 198: 1116-1123.
24. O'Brien, S. J., Peters, J., Searle, A., Womack, J., and Marshall-Graves, J. (1993). Report on the committee on comparitive gene mapping. Genome Priority Rep. 1: 758-809.
25. Ried, T., Baldini, A., Rand, T. C., and Ward, D. C. (1992). Simultaneous visualization of seven different DNA probes by in situ hybridization using combinatorial fluorescence and digital imaging microscopy. Proc. Natl. Acad. Sci. USA 89: 1388-1392.
26. Warburton, P. E., and Willard, H. F. (1990). Genomic analysis of sequence variation in tandemly repeated DNA: Evidence for localized homogeneous sequence domains within arrays of alpha satellite DNA. J. Mol. Biol. 216: 3-16.
27. Warburton, P. E., Greig, G. M., Haaf, T., and Willard, H. F. (1991). PCR amplification of chromosome-specific alpha satellite DNA: Definition of centromeric STS markers and polymorphic analysis. Genomics 11: 324-333.
28. Warburton, P. E., Wevrick, R., Mahtani, M. M., and Willard, H. F. (1992). Pulsed field and two dimensional gel electrophoresis of long arrays of tandemly repeated DNA: Analysis of human centromeric alpha satellite DNA. In "Pulsed Field Gel Electrophoresis" (M. Burmeister and L. Ulanovsky, Eds.), pp. 299-317, Humana Press, Totawa, NJ.
29. Warburton, P. E., and Willard, H. F. (1992). PCR amplification of tandemly repeated DNA: Analysis of intra-and interchromosomal sequence variation and homologous crossing-over in human alpha satellite DNA. Nucleic Acids Res. 20: 6033-6042.
30. Warburton, P. E., Waye, J. S., and Willard, H. F. (1993). Unequal crossing-over in tandemly repeated DNA: Implications for higher-order structural characteristics within centromeric heterochromatin. Mol. Cell. Biol. 13: 6520-6529.
31. Warburton, P. E., and Willard, H. F. (1995). Inter-homologue sequence variation of chromosome 17 alpha satellite DNA: Evidence for concerted evolution along haplotypic lineages. J. Mol. Evol. 41: 1006-1015.
32. Waye, J. S., and Willard, H. F. (1985). Chromosome-specific alpha satellite DNA: Nucleotide sequence analysis of of the 2.0 kb repeat from the human X chromosome. Nucleic Acids Res. 13: 2731-2743.
33. Waye, J. S., and Willard, H. F. (1986). Structure, organization, and sequence of alpha satellite DNA from human chromosome 17: Evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome. Mol. Cell. Biol. 6: 3156-3165.
34. Waye, J. S., and Willard, H. F. (1989). Concerted evolution of alpha satellite DNA: Evidence for species specificity and a general lack of sequence conservation among alphoid sequences of higher primates. Chromosoma 98: 273-279.
35. Wevrick, R., and Willard, H. F. (1989). Long range organization of tandem arrays of alpha satellite DNA at the centromeres of human chromosomes: High frequency array-length polymorphism and meiotic stability. Proc. Natl. Acad. Sci. USA 86: 9394-9398.
36. Wienberg, J., Jauch, A., Ludecke, H. J., Senger, G., Horsthemke, B., Claussen, U., Cremer, T., Arnold, N., and Lengauer, C. (1994). The origin of human chromosome 2 analyzed by comparative chromosome mapping with a DNA microlibrary. Chromosome Res. 2: 405-410.
37. Willard, H. F. (1991). Evolution of alpha satellite. Curr. Opin. Genet. Dev. 1: 509-514.
38. Willard, H. F., and Waye, J. S. (1987a). Hierarchical order in chromosome-specific human alpha satellite DNA. Trends Genet. 3: 192-198.
39. Willard, H. F., and Waye, J. S. (1987b). Chromosome-specific subsets of human alpha satellite DNA: Analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat. J. Mol. Evol. 25: 207-214.
40. Yunis, J. J., and Prakash, O. (1982). The origin of man: A chromosomal pictorial legacy. Science 215: 1525-1530.